Background gradient suppression in pulsed gradient stimulated echo measurements

Pulsed gradient spin echo (PGSE) experiments can be used to measure the probability distribution of molecular displacements. In homogeneous samples this reports on the molecular diffusion coefficient, and in heterogeneous samples, such as porous media and biological tissue, such measurements provide information about the sample's morphology. In heterogeneous samples however background gradients are also present and prevent an accurate measurement of molecular displacements. The interference of time independent background gradients with the applied magnetic field gradients can be removed through the use of bipolar gradient pulses. However, when the background gradients are spatially non-uniform molecular diffusion introduces a temporal modulation of the background gradients. This defeats simple bipolar gradient suppression of background gradients in diffusion related measurements. Here we introduce a new method that requires the background gradients to be constant over coding intervals only. Since the coding intervals are typically at least an order of magnitude shorter than the storage time, this new method succeeds in suppressing cross-terms for a much wider range of heterogeneous samples.     

Determination of genuine diffusivities in heterogeneous media using stimulated echo pulsed field gradient NMR

Pulsed field gradient (PFG) NMR diffusion measurements in heterogeneous media may lead to erroneous results due to the disturbing influence of internal magnetic field gradients. Here, we present a simple theoretical model which allows one to interpret data obtained by stimulated spin echo PFG NMR in the presence of spatially varying internal field gradients. Using the results of this theory, the genuine self-diffusion coefficients in heterogeneous media may be extrapolated from the dependence of the apparent diffusivities on the dephasing time of the simulated echo PFG NMR sequence. Experimental evidence that such extrapolation yields satisfactory results for self-diffusion of hexadecane in natural sediments (sand) and of n-octanol in doped MgO pastes is provided.     

Analysis of the magic asymmetric gradient stimulated echo sequence with shaped gradients

Recently a 13-interval magic asymmetrical gradient stimulated echo (MAGSTE) sequence has been proposed for accurate displacement measurements in the presence of spatially varying background gradients. In this paper, the commonly used trapezoidal and sine shaped gradients are studied for the MAGSTE sequence, and the magic asymmetrical gradient ratio and b-factor are provided. The derivation enables the MAGSTE sequence to be implemented on systems with non-negligible gradient rise times.     

Improved diffusion-weighting efficiency of pulsed gradient stimulated echo MR measurements with background gradient cross-term suppression

Accurate diffusion measurements with pulsed gradient NMR are hampered by cross-terms of the diffusion-weighting and background gradients. For experiments based on a stimulated echo pulse sequence, that is preferred for samples with a T2 short compared to the diffusion time, a diffusion-weighting scheme has been presented that avoids these cross-terms in each of the en- and decoding periods separately. However, this approach suffers from a reduced diffusion-weighting efficiency because the two gradients applied in each of the periods have effectively opposite polarities leading to a partial cancellation. An extension of this scheme is presented that involves an additional gradient pulse in each period and delivers an improved diffusion-weighting efficiency without sacrificing the cross-term compensation. Analytical expressions for the gradient pulse lengths and amplitudes are given for arbitrary timing parameters. MR measurements with artificial (switched) background gradients were performed to test the cross-term compensation capability of the proposed extension. The results show that considerably higher q and b values can be achieved with the extension without changing the timing parameters. The MR measurements yielded identical diffusion coefficients without, with the same, and with different background gradients in the en- and decoding periods demonstrating the cross-term compensation of the presented approach.     

Cross-term-compensated pulsed-gradient stimulated echo MR with asymmetric gradient pulse lengths

The magic asymmetric gradient stimulated echo (MAGSTE) sequence developed to compensate background-gradient cross-terms in the preparation and readout interval independently, assumes identical lengths for the two gradient pulses applied in each interval. However, this approach is rather inefficient if some extra delay time is present in one half of an interval, e.g. as required for special RF excitations or spatial encoding prior to the stimulated echo in MR imaging. Therefore, a generalized version of the sequence is presented that considers different gradient pulse lengths within an interval. It is shown theoretically that (i) for any pulse lengths a "magic" amplitude ratio exists which ensures the desired cross-term compensation in each interval and that (ii) prolonging one of the gradients can deliver a considerably higher diffusion weighting efficiency. These results are confirmed in MR imaging experiments on phantoms and in vivo in the human brain at 3T using an echo-planar trajectory. In the examples shown, typically 10 times higher b values can be achieved or an echo time reduction with a 40% signal gain in brain white matter. Thus, in case of asymmetric timing requirements, the generalized MAGSTE sequence with different gradient pulse lengths may help to overcome signal-to-noise limitations in diffusion weighted MR.     

Constant time steady gradient NMR diffusometry using the secondary stimulated echo

A pulse sequence producing a second stimulated echo is suggested for the compensation of relaxation and residual dipolar interaction effects in steady gradient spin echo diffusometry. Steady field gradients of considerable strength exist in the fringe field of NMR magnets, for instance. While the absolute echo time of the second stimulated echo is kept constant throughout the experiment, the interval between the first two radiofrequency pulses is augmented leading to a modulation of the amplitude of that second stimulated echo by self-diffusion only. The unique feature of this technique is that it is of a single-scan/single-echo-signal nature. That is, no reference signals neither of the same pulse sequence nor of separate experiments are needed. The new method was tested with poly(ethylene oxide) melts and proved to provide reliable data for (time dependent) self-diffusion coefficients down to the physical limit (D approximately 10(-15)m(2)/s) when flip-flop spin diffusion starts to become effective.     

Separation of velocity distribution and diffusion using PFG NMR

Pulsed field gradient (PFG) NMR is applied to investigate flow processes. In this case the NMR signal experiences phase modulation due to flow and signal attenuation due to the distribution of velocities. The velocity distribution consists of one part originating from diffusion and of a second part, the distribution of the directed motion. The usual PFG-experiment in which the gradient strength is incremented cannot distinguish between both. Incrementing velocity at constant gradient strength keeps the contribution from diffusion constant but changes the absolute width of the velocity distribution. So the signal is attenuated again, but only due to the distribution of the directed motion. The phase modulation as a signature of flow is not affected by this strategy, because velocity and gradient strength are Fourier conjugated. The key advantage of this approach is the possibility of measuring very low velocities, which only cause a very slight phase modulation that is easily covered by diffusion. The method is discussed here for very slow flow in a rheometer cell.     

Anisotropic diffusion in a nematic liquid crystal- An electric field PFG NMR approach

The access to self-diffusion coefficients in anisotropic systems such as thermotropic liquid crystals by means of PFG NMR is complicated by strong dipolar interactions. Additionally, problems arise due to the immediate orientation of low-molar-mass nematic liquid crystals in an external field. The director orientation can be changed by the application of an additional electric field. This can be exploited in order to reduce the dipolar interaction to such an extent that the NMR linewidths change from a solid-state to a liquid-like situation enabling PFG NMR experiments.     

NMR in pulsed magnetic field

Nuclear magnetic resonance (NMR) experiments in pulsed magnetic fields up to 30.4 T focused on ¹H and ⁹³Nb nuclei are reported. Here we discuss the advantage and limitation of pulsed field NMR and why this technique is able to become a promising research tool.     

An improved method for suppressing protein background in PFG NMR experiments to determine ligand diffusion coefficients in the presence of receptor

In NMR diffusion experiments to study ligand-protein binding equilibria, the spectral background due to broad protein resonances can contribute significantly to the measured ligand signal intensity resulting in erroneous binding affinities. One method to suppress the protein spectral background involves coupling a CPMG pulse train before or after the BPPSTE pulse sequence to allow for differential T(2) relaxation of the broad protein resonances. Here, we present an improved method, the Gradient Phase Encoded Spin-lock (GraPES) experiment that integrates the relaxation filter into the diffusion period. Compared with sequential CPMG-BPPSTE pulse sequences, GraPES offers effective suppression of the protein background with improved signal-to-noise ratios and shorter experiment times.     

Probing four orders of magnitude of the diffusion time in porous silica glass with unconventional NMR techniques

The combined use of two unconventional NMR diffusometry techniques permits measurements of the self-diffusion coefficient of fluids confined in porous media in the time range from 100 microseconds to seconds. The fringe field stimulated echo technique (FFStE) exploits the strong steady gradient in the fringe field of a superconducting magnet. Using a standard 9.4 T (400 MHz) wide-bore magnet, for example, the gradient is 22 T/m at 375 MHz proton resonance and reaches 60 T/m at 200 MHz. Extremely short diffusion times can be probed on this basis. The magnetization grid rotating frame imaging technique (MAGROFI) is based on gradients of the radio frequency (RF) field. The RF gradients not necessarily need be constant since the data are acquired with spatial resolution along the RF gradient direction. MAGROFI is also well suited for unilateral NMR applications where all fields are intrinsically inhomogeneous. The RF gradients reached depend largely on the RF coil diameter and geometry. Using a conic shape, a value of at least 0.3 T/m can be reached which is suitable for long-time diffusion measurements. Both techniques do not require any special hardware and can be implemented on standard high RF power NMR spectrometers. As an application, the influence of the tortuosity increasing with the diffusion time is examined in a saturated porous silica glass.     

Determination of pore space shape and size in porous systems using NMR diffusometry. Beyond the short gradient pulse approximation

The influence of finite length gradient pulses on NMR diffusion experiments on liquids confined to diffuse between two parallel planes is investigated. It is experimentally verified that the pore size decreases when determined using finite gradient pulses if the results are analyzed within the short gradient pulse approximation. The results are analyzed using the matrix formulation. The observed minima in the echo decay profiles are considerably less sharp than theoretical analysis would indicate and we suggest that this is due to the presence of a distribution of pore sizes in the sample. In addition, effects due to the presence of background gradients are discussed. It is argued that effects due to the finite length gradient pulses are relatively minor and in realistic applications the effects due to inhomogeneities in pore sizes and effects due to background gradients will constitute more serious problems in pore size determinations by means of NMR diffusometry.     

Improved diffusion measurement in heterogeneous systems using the magic asymmetric gradient stimulated echo (MAGSTE) technique

A magic asymmetric gradient stimulated echo (MAGSTE) sequence was recently proposed to improve molecular diffusion measurements in the presence of spatially varying background gradients. Its effectiveness has been demonstrated previously with simulated background gradients and in phantoms that contain bulk susceptibility differences. In this study, we investigated the MAGSTE technique in microscopically heterogeneous systems, and compared it with the conventional bipolar pulsed gradient stimulated echo (bPGSTE) sequence. We demonstrated that the MASGTE measurements, compared to the bPGSTE method, varied significantly less when the diffusion encoding/decoding interval (delta) was changed. In addition, the MAGSTE technique provided good characterization of the surface area-to-volume ratio for heterogeneous systems investigated in this study. In sum, this study showed that the MAGSTE technique provided diffusion measurements superior to those of the bPGSTE sequence, especially in the presence of severe heterogeneous background gradients.     

The DOSY Toolbox: A new tool for processing PFG NMR diffusion data

The DOSY Toolbox is a free programme for processing PFG NMR diffusion data (sometimes loosely referred to as DOSY data), distributed under the GNU General Public License. NMR data from three major manufacturers can be imported and all processing is done in a user-friendly graphical user interface. The Toolbox is completely free-standing in the sense that all necessary basic processing of NMR data (e.g., Fourier transformation and phasing) is catered for within the programme, as well as a number of methods specific to DOSY data (e.g., DOSY and SCORE). The programme is written in MATLAB^® and as such can be run on any platform, but can also run independent of MATLAB^® in a free-standing compiled version for Windows, Mac, and Linux.     

Predictions of pulsed field gradient NMR echo-decays for molecules diffusing in various restrictive geometries. Simulations of diffusion propagators based on a finite element method

Pulsed field gradient NMR diffusometry is a promising tool for investigating structures of porous material through determinations of dynamic displacements of molecules in porous systems. A problem with this approach is the lack of closed analytical expressions for echo-decays in anything but idealized pore geometries. We present here an approach based on calculating the appropriate diffusion propagator by means of finite element calculations. The suggested method is quite general, and can be applied to arbitrary porous systems. The protocol for the calculations is outlined and we show results from some different cases: diffusion in confined geometries and in systems that are spatially inhomogeneous with respect to concentration.     

Probing lateral diffusion in lipid membranes on nanoscale by PFG NMR with high gradient strength

This work demonstrates the feasibility of noninvasive studies of diffusion on a submicrometer length scale in aligned model lipid membranes using pulsed field gradient nuclear magnetic resonance with ultrahigh (up to 35 T/m) gradient strength. Application of such gradients allows the use of sufficiently small diffusion times under conditions of narrow-pulse approximation. As a result, monitoring anomalous or restricted diffusion in lipid membranes on a length scale in the range of 100 nm becomes possible. The ability to study diffusion in lipid membranes on this length scale is very important because it is comparable with the size of biologically relevant domains (i.e., rafts), which are believed to exist in biomembranes.     

Diffusion studies in confined nematic liquid crystals by MAS PFG NMR

Pulsed field gradient (PFG) NMR and magic-angle spinning (MAS) NMR have been combined in order to measure the diffusion coefficients of liquid crystals in confined geometry. Combination of MAS NMR with PFG NMR has a higher spectroscopic resolution in comparison with conventional PFG NMR and improves the application of NMR diffusometry to liquid crystals. It is found that the confinement of the liquid crystal 5CB in porous glasses with mean pore diameters of 30 and 200 nm does not notably change its diffusion behavior in comparison with the bulk state.     

NMR microimaging studies of water diffusivity in saturated, microporous systems

A novel microimaging method is described for measuring the effective diffusion coefficient (D_∞) of water in saturated, microporous materials. A simple multicompartment computer simulation was used to show how the value of D_∞, when combined with measurements of water proton relaxation times and pulsed field gradient spin-echo amplitudes, allows the pore size distribution and pore connectivity to be characterized.