Long-Range proton-proton coupling constants. I. Propanic coupling involving a methyl group 4JMeH

An equation is formulated on the basis of theoretical INDO/FPT calculations which describes the angular dependence of the propanic long-range coupling constant ⁴J_MeH in substituted HCCCH₃ fragments. This equation is a truncated Fourier series in the torsion angle ?, HCCMe, which takes into account the dependence of the Fourier coefficients on the bond angle θ, CCMe. The substituent effects are assumed to be additive. Some parameters in the equation may be obtained from the ⁴J_MeH couplings in propane and neopentane derivatives. The calculated effect upon ⁴J_MeH of changes in the bond angle θ is significant and it seems to be in part the cause of some effects which have been attributed to conformational dependence.     

Vicinal C,H spin coupling in substituted alkenes. Stereochemical significance and structural effects

Vicinal C,H spin coupling (³J_C,H) in substituted alkenes has been investigated systematically. Emphasis is laid on the stereochemical significance (J^trans/J^cis) and on the various structural factors which influence ³J_C,H, such as π-bond order, torsional angle ?, bond angle θ, electronegativity of substituents and steric effects. A new type of γ-effect is observed in ³J^trans_C,H which appears to have the same origin as the γ-shift effect. By comparison of ³J and ³J_H,H, it was found that the relation ³J_C,H ≈? 0·6 ³J_H,H holds for both trans and cis coupling constants. Finally, it is concluded that ³J_C,H constitutes a valuable criterion to distinguish E- and Z-isomers, particularly in trisubstituted alkenes. Applications to natural products are presented.     

3‐Bromo‐1‐(2‐deoxy‐β‐d‐erythro‐pento­furan­osyl)‐1H‐pyrazolo­[3,4‐d]­pyrimidine‐4,6‐di­amine: a nucleoside which strongly enhances DNA duplex stability

The title compound, C₁₀H₁₃BrN₆O₃, exhibits an anti gly­cosylic bond conformation, with an O—C—N—C torsion angle of −105.0 (6)°. The pseudorotation phase angle and the amplitude [P = 5.8 (5)° and τ_m = 30.0 (3)°, respectively] indicate N‐type sugar puckering (³T₂).     

Isotope Shifts of Nitrogen around 800 nm

The Doppler-limited absorption spectra of ¹⁴N and ¹⁵N atoms were measured around 800 nm using concentration modulation spectroscopy to study their isotope shifts. The nitrogen atoms were generated by discharging molecular nitrogen buffered with helium in a homemade discharge tube. The isotope shifts of four multiplets (3s⁴P_J→3p⁴D_J^o, 3s⁴P_J→3p⁴P_J^o, 3s²D_J→5s²P_J^o, and 3p²P_J^o→5s²D_J^o) were measured and their J-dependent specific mass shifts were observed and discussed.     

NMR spectra of 1,3-butadienes: VII—the conformation of 2,4-dimethyl-2,4-pentadiene

Proton magnetic resonance spectra of 2,4-dimethyl-2,4-pentadiene have been examined for a number of solution conditions and (for a CF₂Cl₂ solution) over a range of temperatures. Coupling constants for the ethylenic protons were obtained from double resonance (methyl decoupled) spectra. Further double resonance experiments established the sign of ⁴J_c. It is found that ⁴J_c = ?1·20 Hz and [⁴J_t] = 0·18 Hz. It is concluded that the compound exists in a single nonplanar conformation with an average dihedral angle (from the s-cis form) ? = 50° ± 15°. Some long range coupling constants involving the methyl group were found to be appreciable in spite of the lack of planarity of the diene chain.     

The 13C,H coupling constants in structural and conformational analysis. III.. Long-range carbon–hydroxyl proton couplings as evidence of hydrogen bonding in some acylphloroglucinols

Proton coupled ¹³C NMR spectra have been recorded for some acylphloroglucinol derivatives. Significant couplings over two, three and four bonds were observed between the hydroxyl proton and aromatic carbons for those compounds where the hydroxyl group is hydrogen bonded strongly enough to the carbonyl carbon of the acyl side chain. Typical values were ²J = 4.8 Hz, and ³J = 5.6 Hz or 6.7 Hz corresponding to dihedral angles of c. 0° and c. 180°, respectively; the dihedral angle is defined as the angle between the O—H bond and the plane of the aromatic ring. A stereospecific ⁴J(COH) value of 1.2 Hz for a ‘W’ arrangement of coupled atoms was also found. An interesting example of ‘virtual’ J(CH) coupling was observed in the proton coupled spectrum of 1-butyrylphloroglucinol 2-monomethyl ether in acetone-d₆ caused by the accidentally equal chemical shifts of the two ring protons.     

High Accuracy of Karplus Equations for Relating Three‐Bond J Couplings to Protein Backbone Torsion Angles

³J_C′C′ and ³J_HNHα couplings are related to the intervening backbone torsion angle ${\varphi }$ by standard Karplus equations. Although these couplings are known to be affected by parameters other than ${\varphi }$ , including H‐bonding, valence angles and residue type, experimental results and quantum calculations indicate that the impact of these latter parameters is typically very small. The solution NMR structure of protein GB3, newly refined by using extensive sets of residual dipolar couplings, yields 50–60 % better Karplus equation agreement between ${\varphi }$ angles and experimental ³J_C′C′ and ³J_HNHα values than does the high‐resolution X‐ray structure. In intrinsically disordered proteins, ³J_C′C′ and ³J_HNHα couplings can be measured at even higher accuracy, and the impact of factors other than the intervening torsion angle on ³J will be smaller than in folded proteins, making these couplings exceptionally valuable reporters on the ensemble of ${\varphi }$ angles sampled by each residue.     

Stereoelectronic interactions: A booster for 4JHF transmission

Long-range proton-fluorine coupling constants (ⁿJ_HF) are helpful for the structure elucidation of fluorinated molecules. However, their magnitude and sign can change with the relative position of coupled nuclei and the presence of substituents. Here, trans-4-tert-butyl-2-fluorocyclohexanone was used as a model compound for the study of the transmission of ⁴J_HF. In this compound, the ⁴J_H6axF was measured to be +5.1 Hz, which is five times larger than the remaining ⁴J_HF in the same molecule (⁴J_H4F = +1.0 Hz and ⁴J_H6eqF = +1.0 Hz). Through a combination of experimental data, natural bond orbital (NBO) and natural J-coupling (NJC) analyses, we observed that stereoelectronic interactions involving the π system of the carbonyl group are involved in the transmission pathway for the ⁴J_H6axF. Interactions containing the π system as an electron acceptor (e.g., σ_{C6 H6ax} → π^*_C═O and σ_{C F} → π^*_C═O) increase the value of the ⁴J_H6axF, while the interaction of the π system as an electron donor (e.g., π_C═O → σ^*_{C F}) decreases it. Additionally, the carbonyl group was shown not to be part of the transmission pathway of the diequatorial ⁴J_H6eqF coupling in cis-4-tert-butyl-2-fluorocyclohexanone, revealing that there is a crucial symmetry requirement that must be fulfilled for the π system to influence the value of the ⁴J_HF in these systems.     

p‐Cresyl 2,3‐an­hydro‐5‐deoxy‐5‐phthal­imido‐1‐thio‐α‐d‐lyxo­furan­oside

The crystal structure of the title compound, C₂₀H₁₇NO₄S, (I), was determined in order to compare the solution and solid‐state conformations. The mol­ecule was synthesized as a building block for incorporation into oligosaccharides comprised of conformationally restricted furan­ose residues. The furan­ose ring adopts an envelope conformation with the ring O atom displaced above the plane (an ^OE conformation). The pseudorotational phase angle (P) is 88.6° and the puckering amplitude (τ_m) is 31.5°. The C₂—C₁—S—C(Ph) torsion angle is ?163.2 (2)°, which places the aglycone in the exo‐anomeric effect preferred position. The C1—S—C14 bond angle is 99.02 (13)° and the plane of the cresyl moiety is oriented nearly parallel to the four in‐plane atoms of the furan­ose ring envelope. The orientation about the C4—C5 bond is gauche–gauche [Bock & Duus (1994). J. Carbohydr. Chem. 13 , 513–543].     

1H and 13C NMR study of α-acetylenic PIII and PIV derivatives. Signs and magnitudes of J(P?C) and J(P?H)

All J(P? H) and J(P? C) values, including signs, have been obtained in acetylenic and propynylic phosphorus derivatives, R₂P(X)? C?C? H and R₂P(X)? C?C? CH₃ (X ? oxygen, lone pair and R ? C₆H₅, N(CH₃)₂, OC₂H₅, N(C₆H₅)₂, Cl) from ¹H and ¹³C NMR spectra. In P^IV derivatives the following signs are obtained: ¹J(P? C)+, ²J(P? C)+, ³J(P? C)+, ³J(P? H)+, ⁴J(P? H)? . Linear relations are observed between ¹J(P? C), ²J(P? C) and ³J(P? C) versus ³J(P? H), indicating that these coupling constants are mainly dependent on the Fermi contact term, though the other terms of the Ramsey theory do not seem to be negligible for ¹J(P? C) and ²J(P? C). In P^III derivatives these signs are: ¹J(P? C)- and +, ²J(P? C)+, ³J(P? C)-, ³J(P? H)-, ⁴J(P? H)+. Only ³J(P? C) and ³J(P? H) reflect a small contribution of the Fermi contact term while in ¹J(P? C) and ²J(P? C) this contribution seems to be negligible relative to the orbital and/or spin dipolar coupling mechanisms.     

Direct and indirect substituent effects on 1J(CH) in vinyl derivatives and related compounds

The variation in the one–bond couplings ¹J(CH) in vinyl derivatives with substituent has been examined. For the geminal proton ¹J correlates very badly with substituent electronegativity but extremely well with σ_I, if conjugating substituents are excluded. In the case of halogen substituents the marked stereospecificity of ¹J(CH) for the cis and trans protons can be rationalised in terms of an intrinsic dependence of π_CH on the dihedral angle between the coupling atoms and the perturbing substituent, with an additional positive increment to the cis coupling due to direct interaction of the substituent non-bonding electrons or to orbital circulation of the substituent electrons. The intrinsic specificity of β-substituent effects on ¹J(CH) is also found in analogous compounds containing C?N and C?O bonds.     

13C, 1H spin coupling constants of dimethylacetylene

¹³C, ¹H spin coupling constants of dimethylacetylene have been determined by the complete analysis of the proton coupled ¹³C NMR spectrum. For the methyl carbon ¹J(CH) = + 130.6₄ Hz and ⁴J(CH) = + 1.5₈ Hz, and for the acetylenic carbon ²J(CH) = ? 10.34 Hz and ³J(CH) = +4.30 Hz. The ⁵J(HH) long-range coupling constant (+2.79 Hz) between the methyl protons was also determined.     

Elucidating heteroatom influence on homonuclear 4J(H,H) coupling constants by DFT/NMR approach

We report the structural dependency of long range scalar J-coupling constant across four bonds as function of the dihedral angles Φ1 and Φ3. The calculated homonuclear coupling constants ⁴J(_H,H), obtained at a density functional theory level, were measured between C(1)─X(2) and X(2)─C(3) bonds in three-term models, where C, N, O, and S were systematically used as the second atom of the alkyl structures ( 1 - 4 ). The ⁴J_(H,H) calculated values, tabulated for variation of 30° for both Φ1 and Φ3, have disclosed an unexpected detectable coupling constant (⁴J(_H,H) ≥ 1 Hz) across heteroatoms, useful to provide valuable structural information. A 2-methyl-1,3-dithiane sulfide ( 5 ) was used as a case study to prove the applicability and reliability of the calculated values to real issues. The ⁴J(_H,H) values obtained at density functional theory for the system 4 have reproduced with good accuracy an unexpected experimental ⁴J(_H2ax-H4ax) = 1.01 Hz of sulfide molecule ( 5 ), suggesting these calculated coupling constant values as a new powerful tool for the organic synthesis and stereochemical analysis.     

1H NMR study of 2,8-dithia-1,5-dielementbicyclo[3.3.0]octanes

The analysis of the ¹H NMR spectra of 2,8-dithia-1,5-diphosphabicyclo[3.3.0]octane, 2,8-dithia-1-phospha-5-azabicyclo[3.3.0]octane and 2,8-dithia-1-arsa-5-phosphabicyclo[3.3.0]octane is supported by means of 2D- J-resolved NMR measurements. The spectra suggest a preferred conformer with strong puckering of the fused five membered rings.     

The collisional quenching of electronically excited arsenic atoms As(42DJ) and As(42PJ), studied by time-resolved attenuation of atomic resonance radiation

A kinetic investigation of electronically excited arsenic atoms in the low-lying states, As(4p^{3 2}D_J) and As(4p^{3 2}P_J), ca. 1.33 and 2.28 eV, respectively, above the 4⁴S_3/2 ground state, has been carried out by atomic absorption spectroscopy. Atoms in these optically metastable states were generated by the pulsed irradiation of suitable arsenic compounds (AsMe₃ for ²D and AsCl₃ for ²P) in different spectral regions and monitored photoelectrically by time-resolved attenuation of atomic resonance radiation. Rate constants for the deactivation of these two states are reported for a range of collision partners. The data are compared with those of the analogous states of lighter atoms in group V, namely, P(3²D_J, 3²P_J) and N(2²D_J, 2²P_J), and discussed in terms of spin and orbital symmetry considerations.     

7‐Iodo‐8‐aza‐7‐deaza‐2′‐deoxy­adenosine and 7‐bromo‐8‐aza‐7‐deaza‐2′‐deoxyadenosine

The isomorphous structures of the title molecules, 4‐amino‐1‐(2‐deoxy‐β‐d ‐erythro‐pento­furan­osyl)‐3‐iodo‐1H‐pyrazolo‐[3,4‐d]pyrimidine, (I), C₁₀H₁₂IN₅O₃, and 4‐amino‐3‐bromo‐1‐(2‐deoxy‐β‐d ‐erythro‐pento­furan­osyl)‐1H‐pyrazolo[3,4‐d]­pyrimidine, (II), C₁₀H₁₂BrN₅O₃, have been determined. The sugar puckering of both compounds is C1′‐endo (^1′E). The N‐­glycosidic bond torsion angle χ¹ is in the high‐anti range [?73.2 (4)° for (I) and ?74.1 (4)° for (II)] and the crystal structure is stabilized by hydrogen bonds.     

Observation of Slow Relaxation and Single‐Molecule Toroidal Behavior in a Family of Butterfly‐Shaped Ln4 Complexes

A family of five isostructural butterfly complexes with a tetranuclear [Ln₄] core of the general formula [Ln₄(LH)₂(μ₂‐η¹η¹Piv)(η²‐Piv)(μ₃‐OH)₂]?x H₂O?y MeOH?z CHCl₃ ( 1 : Ln=Dy^III, x=2, y=2, z=0; 2 : Ln=Tb^III, x=0, y=0, z=6; 3 : Ln=Er^III, x=2, y=2, z=0; 4 : Ln=Ho^III, x=2, y=2, z=0; 5 : Ln=Yb^III, x=2, y=2, z=0; LH₄=6‐{[bis(2‐hydroxyethyl)amino]methyl}‐N′‐(2‐hydroxy‐3‐methoxybenzylidene)picolinohydrazide; PivH=pivalic acid) was isolated and characterized both structurally and magnetically. Complexes 1 – 5 were probed by direct and alternating current (dc and ac) magnetic susceptibility measurements and, except for 1 , they did not display single‐molecule magnetism (SMM) behavior. The ac magnetic susceptibility measurements show frequency‐dependent out‐of‐phase signals with one relaxation process for complex 1 and the estimated effective energy barrier for the relaxation process was found to be 49 K. We have carried out extensive ab initio (CASSCF+RASSI‐SO+SINGLE_ANISO+POLY_ANISO) calculations on all the five complexes to gain deeper insights into the nature of magnetic anisotropy and the presence and absence of slow relaxation in these complexes. Our calculations yield three different exchange coupling for these Ln₄ complexes and all the extracted J values are found to be weakly ferro/antiferromagentic in nature (J₁=+2.35, J₂=?0.58, and J₃=?0.29 cm^?1 for 1 ; J₁=+0.45, J₂=?0.68, and J₃=?0.29 cm^?1 for 2 ; J₁=+0.03, J₂=?0.98, and J₃=?0.19 cm^?1 for 3 ; J₁=+4.15, J₂=?0.23, and J₃=?0.54 cm^?1 for 4 and J₁=+0.15, J₂=?0.28, and J₃=?1.18 cm^?1 for 5 ). Our calculations reveal the presence of very large mixed toroidal moment in complex 1 and this is essentially due to the specific exchange topology present in this cluster. Our calculations also suggest presence of single‐molecule toroics (SMTs) in complex 2 . For complexes 3 – 5 on the other hand, the transverse anisotropy was computed to be large, leading to the absence of slow relaxation of magnetization. As the magnetic field produced by SMTs decays faster than the normal spin moments, the concept of SMTs can be exploited to build qubits in which less interference and dense packing are possible. Our systematic study on these series of Ln₄ complexes suggest how the ligand design can help to bring forth such SMT characteristics in lanthanide complexes.     

Theoretical determination of molecular structure and conformation: Part X. Geometry and puckering potential of azetidine, (CH2)3NH,combination of electron diffraction and ab initio studies

Restricted Hartree—Fock calculations on 21 planar and puckered conformers of azetidine have been done employing a split valence basis augmented by d functions. Complete geometry optimizations have been performed for eight conformers. In this way the puckering potential of azetidine is explored over the range ?40° < ø (puckering angle) < 40°, for both sp³ and sp² hybridization of the nitrogen atom. In its equatorial form, azetidine is slightly more puckered than cyclobutane. This is because of a decrease of van der Waals' repulsion between H atoms. Charge effects lead to destabilization of the axial forms. There is only moderate coupling between puckering and methylene group rocking. Previously published electron diffraction (ED) data are reinvestigated using vibrational corrections and information from the ab initio calculations. On the basis of this MO constrained ED (MOCED) analysis a puckering angle φ = 35.1(1.8)° is found. Observed r_g and r_e bond distances are compared with ab initio values.     

Triplet Diradical-Cation Salts Consisting of the Phenothiazine Radical Cation and a Nitronyl Nitroxide

The spin–spin and magnetic properties of two (nitronyl nitroxide)-(di-p-anisylamine-phenothiazine) diradical cation salts, ( DAA-PTZ ) ⁺ -NN⋅ MBr₄⁻ (M=Ga, Fe), have been investigated. These diradical-cation species were prepared by the cross-coupling of iodophenothiazine DAA-PTZ-I with NN-AuPPh₃ followed by oxidation with the thianthrenium radical cation ( TA⁺⋅ MBr₄⁻). These salts were found to be highly stable under aerobic conditions. For the GaBr₄ salt, large ferromagnetic intramolecular and small antiferromagnetic intermolecular interactions (J₁/k_B=+320 K and J₂/k_B=−2 K, respectively) were observed. The magnetic property of the Fe³⁺ salt was analyzed by using a six-spin model assuming identical intramolecular exchange interaction (J₃/k_B=+320 K) and the other exchange interactions (J₄/k_B=−7 K and J₅/k_B=−4 K). A significant color change was observed in the UV/Vis/NIR absorption spectra upon electrochemical oxidation of the doublet DAA-PTZ-NN to the triplet ( DAA-PTZ ) ⁺ -NN .     

Magnetic Properties of a Single‐Molecule Lanthanide–Transition‐Metal Compound Containing 52 Gadolinium and 56 Nickel Atoms

Monodisperse metal clusters provide a unique platform for investigating magnetic exchange within molecular magnets. Herein, the core–shell structure of the monodisperse molecule magnet of [Gd₅₂Ni₅₆(IDA)₄₈(OH)₁₅₄(H₂O)₃₈]@SiO₂ ( 1 a @SiO₂) was prepared by encapsulating one high‐nuclearity lanthanide–transition‐metal compound of [Gd₅₂Ni₅₆(IDA)₄₈(OH)₁₅₄(H₂O)₃₈]?(NO₃)₁₈?164 H₂O ( 1 ) (IDA=iminodiacetate) into one silica nanosphere through a facile one‐pot microemulsion method. 1 a @SiO₂ was characterized using transmission electron microscopy, N₂ adsorption–desorption isotherms, and inductively coupled plasma‐atomic emission spectrometry. Magnetic investigation of 1 and 1 a revealed J₁=0.25 cm^?1, J₂=?0.060 cm^?1, J₃=?0.22 cm^?1, J₄=?8.63 cm^?1, g=1.95, and z J=?2.0×10^?3 cm^?1 for 1 , and J₁=0.26 cm^?1, J₂=?0.065 cm^?1, J₃=?0.23 cm^?1, J₄=?8.40 cm^?1 g=1.99, and z J=0.000 cm^?1 for 1 a @SiO₂. The z J=0 in 1 a @SiO₂ suggests that weak antiferromagnetic coupling between the compounds is shielded by silica nanospheres.