Fragment integrals

Vernadskii Institute for Geochemistry and Analytical Chemistry. Translated from Zhurnal Strukturnoi Khimii, Vol. 30, No. 1, pp. 11–18, January–February, 1989.     

Antigen Responsive Hydrogels Based on Polymerizable Antibody Fab′ Fragment

Novel antigen responsive hydrogels were prepared by using polymerizable antibody Fab′ fragment from monoclonal anti‐fluorescein BDC1 antibody (IgG2a). To form Fab′ containing hydrogels, the polymerizable Fab′ fragment was copolymerized with N‐isopropylacrylamide (NIPAAm) and N,N′‐methylenebis(acrylamide) (MBAAm; crosslinker) using redox initiators. The thermosensitivity of the hydrogels decreased with increasing Fab′ fragment content. The antigen responsiveness of the hydrogels depended on the Fab′ content, pH, and temperature. When the hydrogels were alternately exposed to antigens fluorescein (FL) and polyamidoamine dendrimer (PAMAM)‐fluorescein (FD), significant reversible volume changes were observed for the hydrogel containing 50% (w/w) Fab′ fragment at 33.7 and 36.8 °C in acetate buffer (10 mM , pH 5.0), respectively, but not at 27.7 °C or in PBS buffer (10 mM , pH 7.4). No noticeable reversible volume changes were observed with pure PNIPAAm hydrogel and the gel containing 10% (w/w) Fab′ fragment.

Structure of Fab′ containing hydrogels.     

Synthesis of the C1‐C10 Fragment of Muamvatin

This report delineates our efforts towards the synthesis of a stereochemically well‐defined ketone, the C₁?C₁₀ fragment of muamvatin, the first example of a 2, 4, 6‐trioxaadamantane ring skeletal polypropionate marine natural product, using two non‐aldol variants. i) The Shimizu reaction, a Pd(0) mediated stereoselective epoxy‐ring opening of alkenyl oxiranes, was employed for the stereoselective installation of methyl groups in syn‐fashion and ii) Bode's protocol, a NHC‐mediated reaction on β‐epoxy aldehydes, was utilized for stereoselective construction of methyl and hydroxyl groups in anti‐fashion.     

A C2 Fragment as Four‐Electron σ Donor

The formation and X‐ray structure analysis of the Pt^IV complex [(CH₂C{PPh₂C₆H₄}₂)PtI₂] is reported. The molecule possesses the orthometalated ligand (PPh₃)₂C→CH₂, which serves via its C₂ fragment as an unprecedented four‐electron σ donor.     

Multi‐Objective Molecular De Novo Design by Adaptive Fragment Prioritization

We present the development and application of a computational molecular de novo design method for obtaining bioactive compounds with desired on‐ and off‐target binding. The approach translates the nature‐inspired concept of ant colony optimization to combinatorial building block selection. By relying on publicly available structure–activity data, we developed a predictive quantitative polypharmacology model for 640 human drug targets. By taking reductive amination as an example of a privileged reaction, we obtained novel subtype‐selective and multitarget‐modulating dopamine D₄ antagonists, as well as ligands selective for the sigma‐1 receptor with accurately predicted affinities. The nanomolar potencies of the hits obtained, their high ligand efficiencies, and an overall success rate of 90 % demonstrate that this ligand‐based computer‐aided molecular design method may guide target‐focused combinatorial chemistry.     

Fragment chemistry of the hydrogen thioperoxide molecule; energy, chemical potential and hardness

In this paper we present a complete theoretical study of the hydrogen thioperoxide molecule (HSOH). We characterize the internal rotation by studying the evolution of the energy, chemical potential and hardness along the torsional angle. We have found that hydrogen thioperoxide in its electronic singlet state is a gauche molecule. Barrier heights, activation chemical potential and activation hardness have been obtained, and it has been found that the trans barrier is lower than the cis one. Good agreement of rotation barriers is obtained on the basis of comparisons with the available literature experimental data for the HOOH and HSSH parent molecules. Another important result is that the maximum hardness principle is verified for the torsional motion. On the other hand, we characterize the thermochemistry of chemical reactions leading to formation of HSOH from the electronic properties associated with the free constituent fragments. The procedure, which involves the use of Sanderson's rule to estimate chemical potentials and hardnesses, is shown to be promising and opens the possibility of rationalizing the behavior of other series of reactions.     

carbo‐Naphthalene: A Polycyclic carbo‐Benzenoid Fragment of α‐Graphyne

A ring carbo‐mer of naphthalene, C₃₂Ar₈ (Ar=p‐n‐pentylphenyl), has been obtained as a stable blue chromophore, after a 19‐step synthetic route involving methods inspired from those used in the synthesis of carbo‐benzenes, or specifically devised for the present target, like a double Sonogashira‐type coupling reaction. The last step is a SnCl₂/HCl‐mediated reduction of a decaoxy‐carbo‐decalin, which is prepared through successive [8+10] macrocyclization steps. Two carbo‐benzene references are also described, C₁₈Ar₆ and o‐C₁₈Ar₄(C≡C‐SiiPr₃)₂. The carbo‐naphthalene bicycle is locally aromatic according to structural and magnetic criteria, as revealed by strong diatropic ring current effects on the deshielding of ¹H nuclei of the Ar groups and on the negative value of the DFT‐calculated NICS at the center of the C₁₈ rings (?12.8 ppm). The stability and aromaticity of this smallest fused molecular fragment of α‐graphyne allows prediction of the same properties for the carbon allotrope itself.     

Metastable State of the Fc Fragment

The metastable state appearing at neutral pH in the Fc fragment after its brief incubation at pH 2.5 was studied using scanning microcalorimetry, high-flow sedimentation and fluorescence polarization. It was shown that the metastable state of the Fc fragment is characterised by smaller melting enthalpy of C_H2 domains as compared with that of the stable state which is explained by reduced interaction of C_H2 and C_H3domains. As seen from the decrease in the sedimentation coefficient, this leads to diminution of compactness of the Fc fragment molecule. The intramolecular motility of C_H2 domains increases judging by the fluorescence polarization data. This revised version was published online in July 2006 with corrections to the Cover Date.     

Stereoselective Synthesis of the Proposed C79–C104 Fragment of Symbiodinolide

Stereoselective and streamlined synthesis of the proposed C79–C104 fragment 2 of symbiodinolide ( 1 ), a polyol marine natural product with a molecular weight of 2860, was achieved. In the synthetic route, the proposed C79–C104 fragment 2 was synthesized by utilizing a Julia–Kocienski olefination and subsequent Sharpless asymmetric dihydroxylation as key transformations in a convergent manner. Detailed comparison of the ¹³C NMR chemical shifts between the natural product and the synthetic C79–C104 fragment 2 revealed that the stereostructure at the C91–C99 carbon chain moiety of symbiodinolide ( 1 ) should be reinvestigated.     

群柱虫内酯官能团化的C2-C10片段的立体选择性合成

本文以廉价的消旋甲基戊二酸酐为起始原料,完成了具有抗肿瘤活性的海洋天然产物群柱虫内酯（Clavulactone）官能团化的C2-C10片段的立体选择性合成。使用的关键方法包括不对称去对称化获得光学纯手性孤立甲基,和RCM方法构建顺式烯烃。该片段的获得为群柱虫内酯的全合成提供了基础。