Bacterial bioluminescence, bioelectromagnetics and function

The biological functions of light emission in bacterial bioluminescence are not always obvious, especially if the bacteria are in a free-living mode. Experimental evidence suggests that light emission confers benefit to the bacteria themselves such as through photoreactivation and involves as much as 20% of cell energy metabolism. A theoretical model shows if the effect is mediated solely by light then cells should be luminescent at both high and low cell densities, therefore raising doubt over the photoreactivation hypothesis and suggesting that another cofactor is involved. It has been postulated that bioelectromagnetics may be involved in biological processes and be involved with coordinated activity in quorate cells. The cell densities associated with autoinduction coincide with a large change in coupling efficiency in the millimeter and submillimeter spectral region. In this paper it is suggested that one function of bioluminescence is as a pump, involving millimeter and submillimeter wave coupling that is of benefit to the quorum. This may be related to the observation that millimeter wave radiation exposure has been reported to induce changes in DNA conformation and possibly gene expression. Agents that change DNA conformation in bioluminescent bacteria can cause increases in light emission. This work may have implications for electromagnetic fields as quorum-quenching agents.     

发光细菌传感器在纳米氧化物紫外屏蔽性能评估分析中的应用研究

本文发现发光细菌在紫外光照射下能够被杀死，其荧光强度相应地发生降低，而在纳米氧化物的保护下，细菌荧光强度的降低得到了抑制，因此发光细菌可以被用来分析和评价纳米氧化物的紫外屏蔽性能。青海弧菌Q67是发光细菌的一种，本文研究了不同浓度及不同种类的纳米氧化物对本发光细菌在分别受到UVA、UVB、UVC紫外光照射下的发光强度的影响，根据细菌发光强度降低的相对值建立了一种分析和评价纳米氧化物的紫外屏蔽性能的方法。该方法可以对纳米氧化物在UVA、UVB、UVC区的紫外屏蔽性能进行评价，同时也为化妆品等行业提供了一种对防晒剂紫外屏蔽性能评估的有效方法。     

Advances in Microfluidic Biosensors Based on Luminescent Bacteria

Luminescent bacteria can emit visible light at 450–490 nm, and its luminous intensity decreases with the increase of the concentration of toxic substances in test solution. The method using luminescent bacteria is widely used in acute toxicity analysis of water quality because it is a simple, rapid and low-cost way. In recent years, biosensors based on luminescent bacteria have attracted more and more attention, and the reports of bioluminescence biosensors based on microfluidic systems are increasing day by day. Based on the characteristics and mechanism of luminescent bacteria, this paper introduces their applications in the environmental monitoring, and summarizes several new bioluminescence sensors.     

超氧负离子在生物发光中的作用

活性氧物种和超氧负离子是生物体内的重要物质,本文通过超氧负离子在生物发光反应中的作用,针对几种不同的典型生物发光体系,综述了超氧负离子参与发光反应的相关理论和实验研究进展.     

Combining biofunctional magnetic nanoparticles and ATP bioluminescence for rapid detection of Escherichia coli

A rapid, specific and sensitive method for assay of Escherichia coli (E. coli) using biofunctional magnetic nanoparticles (BMNPs) in combination with adenosine triphosphate (ATP) bioluminescence was proposed. The BMNPs were fabricated by immobilizing a specific anti-E. coli antibody on the surface of amine-functionalized magnetic nanoparticles (about 20 nm in diameter), and then was applied to capture the target bacteria E. coli from samples. The BMNPs exhibited high capture efficiency to E. coli. Transmission electron microscope (TEM) images showed that the BMNPs were bound to the surface of entire E. coli cells. The target bacteria became magnetic so that could be isolated easily from the sample solution by employing an external magnetic field. The concentration of E. coli captured by the BMNPs was then detected by an ATP bioluminescence method. The optimization of ATP measurement was carried out to improve the detection sensitivity. The proposed method was applied to detect the E. coli inoculated into pasteurized milk with low detection limit (20 cfu/mL) and short detection time (about 1 h).     

Continuous and real-time bioaerosol monitoring by combined aerosol-to-hydrosol sampling and ATP bioluminescence assay

We present a methodology for continuous and real-time bioaerosol monitoring wherein an aerosol-to-hydrosol sampler is integrated with a bioluminescence detector. Laboratory test was conducted by supplying an air flow with entrained test bacteria (Staphylococcus epidermidis) to the inlet of the sampler. High voltage was applied between the discharge electrode and the ground electrode of the sampler to generate air ions by corona discharge. The bacterial aerosols were charged by the air ions and sampled in a flowing liquid containing both a cell lysis buffer and adenosine triphosphate (ATP) bioluminescence reagents. While the liquid was delivered to the bioluminescence detector, sampled bacteria were dissolved by the cell lysis buffer and ATP was extracted. The ATP was reacted with the ATP bioluminescence reagents, causing light to be emitted. When the concentration of bacteria in the aerosols was varied, the ATP bioluminescence signal in relative light units (RLUs) closely tracked the concentration in particles per unit air volume (# cm⁻³), as measured by an aerosol particle sizer. The total response time required for aerosol sampling and ATP bioluminescence detection increased from 30 s to 2 min for decreasing liquid sampling flow rate from 800 to 200 μLPM, respectively. However, lower concentration of S. epidermidis aerosols was able to be detected with lower liquid sampling flow rate (1 RLU corresponded to 6.5 # cm⁻³ of S. epidermidis aerosols at 200 μLPM and 25.5 # cm⁻³ at 800 μLPM). After obtaining all data sets of concentration of S. epidermidis aerosols and concentration of S. epidermidis particles collected in the flowing liquid, it was found that with our bioluminescence detector, 1 RLU corresponded to 1.8 × 10⁵ (±0.2 × 10⁵) # mL⁻¹ of S. epidermidis in liquid.     

Firefly Luciferase‐based Fusion Proteins and their Applications in Bioanalysis

Firefly luciferase is widely used in molecular biology and bioanalytical systems as a reporter molecule due to the high quantum yield of the bioluminescence, availability of stable mutant forms of the enzyme with prescribed spectral characteristics and abundance of bacterial expression systems suitable for production of recombinant proteins in limitless quantities. In this review, we described fusion proteins of luciferase with biotin‐binding domain and streptavidin, with proteins A and G, antibodies, with DNA‐ and RNA‐binding proteins, as well as fusion proteins designed for BRET systems. The firefly luciferase‐based fusion proteins are represented as an effective tool for the development of different bioanalytical systems such as (1) systems in which luciferase is attached to the surface of the target and the bioluminescence signal is detected from the specific complexes formed; (2) BRET‐based systems, in which the specific interaction induces changes in the bioluminescence spectrum; and (3) systems that use modified or split luciferases, in which the luciferase activity changes under the action of the analyte. All these systems have wide application in biochemical analysis of physiologically important compounds, for the detection of pathogenic bacteria and viruses, for evaluation of protein–protein interactions, assaying of metabolites involved in cell communication and cell signaling.     

Theoretical Study of Dinoflagellate Bioluminescence

Dinoflagellates are the most ubiquitous luminescent protists in the marine environment and have drawn much attention for their crucial roles in marine ecosystems. Dinoflagellate bioluminescence has been applied in underwater target detection. The luminescent system of dinoflagellates is a typical luciferin–luciferase one. However, the excited‐state oxyluciferin is not the light emitter of dinoflagellate bioluminescence as in most luciferin–luciferase bioluminescent organisms. The oxyluciferin of bioluminescent dinoflagellates is not fluorescent, whereas its luciferin emits bright fluorescence with similar wavelength of the bioluminescence. What is the light emitter of dinoflagellate bioluminescence and what is the chemical process of the light emission like? These questions have not been answered by the limited experimental evidence so far. In this study, for the first time, the density functional calculation is employed to investigate the geometries and properties of luciferin and oxyluciferin of bioluminescent dinoflagellate. The calculated results agree with the experimental observations and indicate the luciferin or its analogue, rather than oxyluciferin, is the bioluminophore of dinoflagellate bioluminescence. A rough mechanism involving energy transfer is proposed for dinoflagellate bioluminescence.     

BIOLUMINESCENCE: BIOCHEMICAL AND PHYSIOLOGICAL ADVANCES

Bioluminescent organisms are to be found among the bacteria, fungi, unicellular algae, and most of the major animal phyla, some of which contain hundreds of luminescent species. Early biochemical studies reflected this taxonomic diversity and often a primary focus of attention was the uniqueness of each newly isolated system. Relatively few in vitro cross-reactions were discovered among unrelated species and five of the first six luciferins to be characterized proved to be structurally unrelated compounds. The functions of bioluminescence in many organisms were unknown and, while several theories arose, these theories seldom addressed the part that light production might play in the ecology of an organism or a population. Major advances on each of these fronts have been made during the past decade. Biochemical research has centered on the chemical mechanism(s) of luminescence and a single type of chemical species, a dioxetanone, has emerged as a common intermediate in several (but not all) bioluminescence and chemiluminescence systems. Likewise, in the last 10 years, numerous interphyletic cross-reactions have been discovered and the ecological functions of bioluminescence for a large number of species have been established. Intensive studies are continuing on reaction mechanisms, especially those involving the bioluminescent bacteria, and much remains to be learned about the protein biochemistry of all luminescence systems. Amino acid sequence determinations and X-ray crystallographic studies have been initiated in several laboratories and, in others, attempts are being made to clone the genes that code for bioluminescence proteins. Sensitized bioluminescence has been implicated in representatives of both prokaryotic and eukaryotic organisms. Low level biological chemiluminescence has been investigated in a variety of systems including liver microsomes and phagocytic leucocytes using sensitive photon counting devices. Perhaps the area of greatest growth, however, has been the application of bioluminescence and chemiluminescence techniques as tools of clinical research. The need for safe, sensitive and specific assay methods has, for example, stimulated the development of immobilized luciferases and luciferase-linked enzyme systems. In addition, luminescence immunoassay has emerged as a reasonable alternative to the commonly used, but more troublesome, method of radioimmunoassay. This trend toward applications development has shifted the emphasis of some of the university laboratories and in general has improved the lines of communication between basic and applied research groups working in the area of bioluminescence.     

Granulation of Nitrifying Bacteria in a Sequencing Batch Reactor for Biological Stabilisation of Source-Separated Urine

Biological stabilisation of human urine highly depends on the abundance and activities of nitrifying bacteria. However, it is quite difficult to enrich nitrifiers as bio-aggregation by self-immobilized biomass. In this study, granulation of nitrifying bacteria involving inoculation strategy was developed. Two sequencing batch reactors, the one inoculated with nitrifying bacteria and the other inoculated with aerobic granules, were operated in laboratory side by side with a feeding of urine solution. Aerobic nitrifying granules (ANG), with compact morphological structure and good nitrifying activity, were achieved in the reactor inoculated with aerobic granules. Enrichment of nitrifying bacteria favors the nutrient uptake, and hence, to obtain a high ammonia oxidation efficiency. Nonetheless, nitrite accumulation gradually dominated in reactor, partly attributes to a high concentration of free nitrous acid and free ammonia in bulk. The matured ANG had a rather stable microbial profile, as that a number of activated bacteria occupied the surface of granule. It was also found that ANG were much more impermeable than aerobic granules and activated sludge, which was demonstrated as smaller porosities, and therewith an excellent settleability. The results herein reveal that granulation of nitrifying bacteria could enrich the biomass to implement stabilisation of urine in biological way.     

Perspectives on Bioluminescence Mechanisms

The molecular mechanisms of the bioluminescence systems of the firefly, bacteria and those utilizing imidazopyrazinone luciferins such as coelenterazine are gradually being uncovered using modern biophysical methods such as dynamic (ns–ps) fluorescence spectroscopy, NMR, X‐ray crystallography and computational chemistry. The chemical structures of all reactants are well defined, and the spatial structures of the luciferases are providing important insight into interactions within the active cavity. It is generally accepted that the firefly and coelenterazine systems, although proceeding by different chemistries, both generate a dioxetanone high‐energy species that undergoes decarboxylation to form directly the product in its S₁ state, the bioluminescence emitter. More work is still needed to establish the structure of the products completely. In spite of the bacterial system receiving the most research attention, the chemical pathway for excitation remains mysterious except that it is clearly not by a decarboxylation. Both the coelenterazine and bacterial systems have in common of being able to employ “antenna proteins,” lumazine protein and the green‐fluorescent protein, for tuning the color of the bioluminescence. Spatial structure information has been most valuable in informing the mechanism of the Ca²⁺‐regulated photoproteins and the antenna protein interactions.     

An unexpected switch in the modulation of AI-2-based quorum sensing discovered through synthetic 4,5-dihydroxy-2,3-pentanedione analogues

Quorum sensing (QS) has traditionally referred to a mechanism of communication within a species of bacteria. However, emerging research implicates QS in interspecies communication and competition, and such systems have been proposed in a wide variety of bacteria. The AI-2-based QS system represents the most studied of these proposed interspecies systems, and has been proposed to regulate diverse functions such as bioluminescence, expression of virulence factors, and biofilm formation. As such, the development of modulatory compounds, both agonists and antagonists, is of great interest for the treatment of bacterial infections and the study of unknown AI-2-based QS systems. Toward this end, we have designed and synthesized a panel of 4,5-dihydroxy-2,3-pentanedione/AI-2 analogues and evaluated their effects on the AI-2 QS of various bacteria. The panel of compounds exhibited differential effects in the bacterial cell lines examined, providing a platform for the development of broad-spectrum modulators of AI-2-based QS.     

Assessment of two isolation techniques for bacteria in milk towards their compatibility with Raman spectroscopy

The identification of single microorganism in food samples by conventional plating techniques or molecular genetic methods requires a time consuming enrichment step. Raman spectroscopy in combination with a suitable extraction method however offers the possibility to rapidly identify bacteria on a single cell level. Here we evaluate the two well-known bacteria extraction methods from milk: "buoyant density centrifugation" and "enzymatic milk clearing" towards their recovery efficiency and their compatibility with Raman spectroscopy for a rapid identification of microorganisms in milk. The achieved recovery yields are slightly better compared to those which are already applied for food investigations, where a loss of one order of magnitude is usually reached. For example, buoyant density centrifugation allows collecting up to 35% of the milk-spiked microorganisms. To prove the suitability of the isolation techniques for use in combination with the spectroscopic approach, a small Raman database has been created by recording Raman spectra of well-known contaminants in dairy products. Two subspecies of Escherichia coli and three different Pseudomonas species, which were inoculated to UHT (ultra-high-temperature processed) milk and afterwards extracted by the two techniques mentioned above, were analysed. At a first glance, grave spectral artefacts caused by the matrix itself or especially by the extraction techniques were not obvious. But via chemometric analysis, it could be shown that these factors noticeably influence the identification rates: while the samples prepared via milk clearing did not provide sufficient identification results, buoyant density centrifugation allows an identification of the investigated species with an overall accuracy of 91% in combination with linear discriminant analysis.     

Selected Least Studied but not Forgotten Bioluminescent Systems

Bioluminescence is a form of chemiluminescence generated by luminous organisms. Luminous taxa have currently been reported from about 800 genera and probably over 10 000 species in the world. On the other hand, their bioluminescent systems, including chemical structures of luciferins/chromophores and the genes encoding luciferases/photoproteins, have been elucidated from only a few taxonomic groups, for example beetles, bacteria, dinoflagellates, ostracods and some cnidarians. Research efforts to understand unknown bioluminescence systems are being conducted around the world, and recently, for example, novel luciferin structures of luminous enchytraeid potworms and fungi were identified by the authors. In this study, we review the current status and perspectives, in the context of postgenomic era, of most likely novel but less‐revealed bioluminescence systems of ten selected organisms: earthworm, parchment tubeworm, fireworm, scaleworm, limpet, millipede, brittle star, acorn worms, tunicate and shark, which indeed are the next focus of our international collaboration.     

Luciferin Regeneration in Firefly Bioluminescence via Proton-Transfer-Facilitated Hydrolysis,Condensation and Chiral Inversion

Firefly bioluminescence is produced via luciferin enzymatic reactions in luciferase. Luciferin has to be unceasingly replenished to maintain bioluminescence. How is the luciferin reproduced after it has been exhausted? In the early 1970s, Okada proposed the hypothesis that the oxyluciferin produced by the previous bioluminescent reaction could be converted into new luciferin for the next bioluminescent reaction. To some extent, this hypothesis was evidenced by several detected intermediates. However, the detailed process and mechanism of luciferin regeneration remained largely unknown. For the first time, we investigated the entire process of luciferin regeneration in firefly bioluminescence by density functional theory calculations. This theoretical study suggests that luciferin regeneration consists of three sequential steps: the oxyluciferin produced from the last bioluminescent reaction generates 2-cyano-6-hydroxybenzothiazole (CHBT) in the luciferin regenerating enzyme (LRE) via a hydrolysis reaction; CHBT combines with L-cysteine in vivo to form L-luciferin via a condensation reaction; and L-luciferin inverts into D-luciferin in luciferase and thioesterase. The presently proposed mechanism not only supports the sporadic evidence from previous experiments but also clearly describes the complete process of luciferin regeneration. This work is of great significance for understanding the long-term flashing of fireflies without an in vitro energy supply.     

Chemical Analysis of the Luminous Slime Secreted by the Marine Worm Chaetopterus (Annelida,Polychaeta)

The marine annelid Chaetopterus variopedatus produces bioluminescence by an unknown and potentially novel mechanism. We have advanced the study of this fascinating phenomenon, which has not been investigated for nearly 60 years after initial studies were first reported for this species. Here, we show that the luminous slime produced by the worm exhibits blue fluorescence that matches the bioluminescence emission. This result suggests that the oxyluciferin emitter is present. However, while the blue fluorescence decays over time green fluorescence is increasingly revealed that is likely associated with products of the luminescence reaction. LC/MS and fluorescence analysis of harvested luminescent material revealed riboflavin as the major green fluorescent component. Riboflavin is usually associated with the mechanism of light production in bacteria, yet luminous bacteria were not found in the worm mucus, and accordingly were not reported to be directly responsible for the light emission, which is under nervous control in the worm. We therefore propose a hypothesis in which riboflavin or a structurally related derivative serves as the emitter in the worm's light producing reaction.     

Optimization of the biological component of a bioelectrochemical cell

The efficiency of electron transduction by Shewanella oneidensis MR-1 was investigated both in batch culture and in a dual-chambered electrochemical cell. Aerobically grown bacteria were inoculated into an insoluble FeOOH suspension in an anaerobic environment. As the bacteria reduced Fe(III) to Fe(II) there was a visible color change from red to bluish black; this simple color change assay proved to be a robust method for determining the electrochemical activity of S. oneidensis MR-1. In an effort to improve electricity production by S. oneidensis MR-1, the performance of the electrochemical cell with lactate as a fuel was first optimized with respect to both poised potential and fuel concentration. Ultimately, electricity production proved to be proportional to both the poised potential and to fuel concentration. In particular, higher poised potentials increased charge production. Finally, we attempted to optimize the bacteria themselves for the efficient transduction of reduced carbon sources into electricity. The batch culture underwent a series of serial dilutions; after the 4th dilution the microbe population exhibited a 30% increase in charge production. We are further exploring whether this increase was due to metabolic adaptations or to genetic mutations, and examining additional ways to evolve electrogenic organisms.     

Antimicrobial Properties of Lyophilized Extracts of Olive Fruit,Pomegranate and Orange Peel Extracts against Foodborne Pathogenic and Spoilage Bacteria and Fungi In Vitro and in Food Matrices

Several novel antimicrobials with different concentrations of olive, pomegranate, and orange fruit pulp extracts were produced from agricultural byproducts and, after lyophilization, their antimicrobial activity and potential synergistic effects were evaluated in vitro and in food samples against foodborne pathogenic and spoilage bacteria and fungi. The Minimum Inhibitory of the tested bacteria was 7.5% or 10%, while fungi were inhibited at a concentration of 10% or above. The optical density of bacterial and yeast cultures was reduced to a different extent with all tested antimicrobial powders, compared to a control without antimicrobials, and mycelium growth of fungi was also restricted with extracts containing at least 90% olive extract. In food samples with inoculated pathogens and spoilage bacteria and fungi, the 100% olive extract was most inhibitory against E. coli, S. typhimurium, and L. monocytogenes in fresh burger and cheese spread samples (by 0.6 to 1.8 log cfu/g), except that S. typhimurium was better inhibited by a 90% olive and 10% pomegranate extract in burgers. The latter extract was also the most effective in controlling the growth of inoculated fungi (Aspergillus niger, Penicillium italicum, Rhodotorula mucilaginosa) in both yogurt and tomato juice samples, where it reduced fungal growth by 1–2.2 log cfu/g at the end of storage period. The results demonstrate that these novel encapsulated extracts could serve as natural antimicrobials of wide spectrum, in order to replace synthetic preservatives in foods and cosmetics.     

CONSTRUCTION AND CHARACTERIZATION OF HYBRID LUCIFERASES CODED BY lux GENES FROM Xenorhabdus luminescens AND Vibrio fischeri

Abstract— Molecular cloning techniques were employed to obtain hybrid luciferases with their α and β subunits encoded by lux A and lux B genes, respectively, from Xenorhabdus luminescens strain HW or Vibrio fischeri. Although the two wild-type luminous bacteria are phylogenetically diverged, the hybrid luciferase Xf comprising an α from V. fischeri and a β from X. luminescens HW were both functional in bioluminescence. Their general kinetic properties were close to the wild type enzymes from which the α subunit was derived. The X. luminescens HW enzyme is distinct in having a high optimal temperature for in vitro bioluminescence, a high thermal stability and a sensitivity to aldehyde substrate inhibition. Comparisons of the Xf and VI hybrid luciferases with the two wild-type enzymes indicated that these unusual properties of the X. luminescens HW luciferase originated primarily from the α subunit.     

Whole-cell optical biosensor for mercury — operational conditions in saline water

The present study demonstrates the influences of chlorides, fluorides and bromides of potassium and sodium on the growth and Hg²⁺-induced bioluminescence of bioreporter Escherichia coli ARL1. In a Luria-Bertani medium (LB), cell growth was inhibited by concentrations of sodium and potassium fluorides above 0.2 mol L^?1. The addition of NaCl increased cell tolerance to the toxic effects of fluorides and bromides. Lag periods of 10 h and more were observed for cultivations in LB without NaCl and with halides (NaCl, KCl, NaBr, KBr, NaF and KF) at concentrations lower than 0.06 mol L^?1. In a phosphate buffer (PB), the bioluminescence of E. coli ARL1, induced with HgCl₂, was increased by the addition of NaCl, KCl, NaBr, KBr, NaF and KF (concentration of 0–0.25 mol L^?1). In a saline phosphate buffer (PBS), the maxima of induced bioluminescence declined to 50 %, in the case of NaF (0.12 mol L^?1), and to zero for KF. An addition of tryptone to the induction medium increased induced light emission ten-fold. Concentrated artificial sea water (ASW) (70–100 % ASW) inhibited bioluminescence induction. The new detection assay with E. coli ARL1 made possible the detection of 0.57 µL^?1 of HgCl₂ in double-diluted artificial sea water (25 % ASW).