"Mass defect" tags for biomolecular mass spectrometry

We present a new class of "mass defect" tags with utility in biomolecular mass spectrometry. These tags, incorporating element(s) with atomic numbers between 17 (Cl) and 77 (Ir), have a substantially different nuclear binding energy (mass defect) from the elements common to biomolecules. This mass defect yields a readily resolvable mass difference between tagged and untagged species in high-resolution mass spectrometers. We present the use of a subset of these tags in a new protein sequencing application. This sequencing technique has advantages over existing mass spectral protein identification methodologies: intact proteins are quickly sequenced and unambiguously identified using only an inexpensive, robust mass spectrometer. We discuss the potential broader utility of these tags for the sequencing of other biomolecules, differential display applications and combinatorial methods.     

Electrochemical "signal-on" reporter for amyloid aggregates

The synthesis and characterization of four new Ferrocene (Fc) bioconjugates, bearing a podant (Lys)-Leu-Val-Phe-Phe motif, namely the hydrophobic sequence of amyloid-β-peptides (Aβ), is reported. The Fc-peptide conjugates are characterized by a reversible redox activity and the ability to undergo hydrophobic and hydrogen bonding interactions. Biomolecular interactions between Fc-bioconjugates with Aβ(12-28) fragments were studied by circular dichroism (CD), transmission electron microscopy (TEM), and electrochemistry. All four Fc-peptides interacted favourable with Aβ(12-28) and prevented fibril formation, the extent of which depended on the length of the peptide and the nature of the C-terminal group. The aggregates obtained for the Aβ(12-28)/Fc-peptide mixtures range from short fibrils to spherical aggregates. We demonstrated that in solution the peptide sequence and peptide charge affect the biomolecular interactions. Fc-peptide interactions with immobilized Aβ(12-28)-Cys films on Au surfaces were detected by measuring the current response of the Fc redox process. The formal redox potential, E(0), at ~440 (10) mV and i(pc)/i(pa) at 0.9 were observed characteristic for the monosubstituted Fc-derivative undergoing a one-electron redox process. On the surface, methyl ester-protected Fc-peptides (1 and 3) interacted only weakly with Aβ(12-28)-Cys films, giving rise to minimal redox activity. In contrast, charged Fc-peptides (2 and 4) gave a significant electrochemical readout following the interaction with Aβ(12-28)-Cys films. Interestingly, the Fc-peptide charge dictates the surface-assisted interactions, while hydrophobic and ionic effects contribute to the overall solution behaviour of the Fc-bioconjugates with Aβ(12-28).     

The "bridge" game: role of the fourth player in chiral recognition

A new team player: The "three-point interaction" model, which is usually employed to rationalize chiral recognition, does not account for the amazing enantioselectivity measured for the receptors of many proteic acceptors. Gas-phase experiments have indicated that at least a fourth "player" must be considered: the rigidity that a receptor opposes to distortions of its cavity resulting from noncovalent interactions with a chiral molecule (see picture).     

Supramolecular [6]chochin and "Big Mac" made from chiral Piedfort assemblies

Facile chemical synthesis of the natural chiral-pool-derived host 1 and its subsequent crystallization ("supramolecular synthesis") from different solvents yielded crystalline assemblies. Crystal structure determinations of five of the so formed solvent-inclusion compounds (1 a-1 e) reveal hexagonal symmetries in four cases. The structural characteristics of these chiral host-guest ensembles with varying stoichiometries can be best described as assemblies formed through intra-pair hydrogen bridges of host molecules into Piedfort pairs of differing complexity. Hitherto undescribed, these Piedfort pairs also form even larger regular assemblies that we designate "Big Mac"-like shapes. In the only nonhexagonal case, six independent host molecules form a huge supramolecular analogue of [6]benzocyclophane, also known as [6]chochin, extending this giant supermolecule through intermolecular hydrogen bonds into macroscopic (mm-size) dimensions. As all these crystals are inherently chiral, and new model systems for solid-state applications can be envisaged.     

"Green" pyrotechnics: a chemists' challenge

Fireworks are probably the application of chemistry which resonates best with the general public. However, fireworks and (civil and military) pyrotechnic applications cause environmental pollution and thus have given rise to the development of new, environmentally friendly pyrotechnic compounds and formulations. Nitrogen-rich energetic materials, such as the derivatives of tetrazoles and tetrazines, are about to revolutionize traditional pyrotechnic compositions. This Review summarizes the sources of pollution in current formulations and recent efforts toward "green" pyrotechnics.     

Hydrocarbon-soluble calcium hydride: a "worker-bee" in calcium chemistry

The reactivity of the hydrocarbon-soluble calcium hydride complex [{CaH(dipp-nacnac)(thf)}(2)] (1; dipp-nacnac=CH{(CMe)(2,6-iPr(2)C(6)H(3)N)}(2)) with a large variety of substrates has been investigated. Addition of 1 to C=O and C=N functionalities gave easy access to calcium alkoxide and amide complexes. Similarly, reduction of the C[triple chemical bond]N bond in a cyanide or an isocyanide resulted in the first calcium aldimide complexes [Ca{N=C(H)R}(dipp-nacnac)] and [Ca{C(H)=NR}(dipp-nacnac)], respectively. Complexation of 1 with borane or alane Lewis acids gave the borates and alanates as contact ion pairs. In reaction with epoxides, nucleophilic ring-opening is observed as the major reaction. The high reactivity of hydrocarbon-soluble 1 with most functional groups contrasts strongly with that of insoluble CaH(2), which is essentially inert and is used as a common drying agent. Crystal structures of the following products are presented: [{Ca{OC(H)Ph(2)}(dipp-nacnac)}(2)], [{Ca{N=C(H)Ph}(dipp-nacnac)}(2)], [{Ca{C(H)=NC(Me)(2)CH(2)C(Me)(3)}(dipp-nacnac)}(2)], [{Ca{C(H)=NCy}(dipp-nacnac)}(2)], [Ca(dipp-nacnac)(thf)](+)[H(2)BC(8)H(14)](-) and [{Ca(OCy)(dipp-nacnac)}(2)]. The generally smooth and clean conversions of 1 with a variety of substrates and the stability of most intermediates against ligand exchange make 1 a valuable key precursor in the syntheses of a wide variety of beta-diketiminate calcium complexes.     

"In-gel patch electrophoresis:" a new method for environmental DNA purification

Most of the microorganism species are largely untapped and could represent an interesting reservoir of genes useful for biotechnological applications. Unfortunately, a major difficulty associated with the methods used to isolate environmental DNA is related to the contamination of the extracted material with humic substances. These polyphenolic compounds inhibit the DNA processing reactions and severely impede cloning procedures. In this work, we describe a rapid, simple, and efficient method for the purification of genomic DNA from environmental samples: we added a chromatography step directly embedded into an agarose gel electrophoresis. This strategy enabled the DNA extraction from various environmental samples and it appeared that the purity grade was compatible with digestion by restriction enzymes and polymerase chain reaction (PCR) amplifications.     

A mixed-valence, hexadecamolybdenum cluster with an MoVI cubane "jewel" in a "setting" of five molybdateVI-linked dinuclear MoV nits

The hexadecanuclear, mixed-valence cluster [Mo(16)O(42)(OH)(2)(3-iPrC(3)H(3)N(2))(12)].H(2)O (1), has been synthesized and characterized by X-ray crystallography, IR spectroscopy and mass spectrometry. The C(2)-symmetric complex consists of a cubane Mo(VI) (4)O(4) "jewel" held in a 10-point "setting" comprised of five dinuclear Mo(V) units tethered together by two tetrahedral Mo(VI) centers. The dinuclear units are ligated by twelve 3-isopropylpyrazole units that interact with the Mo--O framework through a network of hydrogen bonds. Structural parameters, charge requirements, and bond valence sum analyses support the assignment of +5 and +6 oxidation states to the dinuclear and cubane/tetrahedral Mo centers, respectively. Space filling models reveal that the pyrazole groups coat much of the surface of the molecule, apart from a number of oxo-rich seams that trace a chiral pattern across the surface. Complex 1 exhibits a unique structure that combines moieties generally atypical of polyoxometalates, viz., a Mo cubane containing only two terminal oxo ligands, and three distinct Mo(V) (2) units (including a 5-coordinate Mo center) tethered into a 10-point "setting" by tetrahedral Mo(VI) centers.     

"Self-immolative" spacer for uncaging with fluorescence reporting

Dual photoliberation: A caged, branched, self-immolative spacer (see scheme, gray box) was designed to rapidly and simultaneously release a desired compound (green) and a fluorophore?(red) upon photoactivation. Careful kinetic analysis of the disassembly of the spacer shows that it occurs on the shortest time scale reported to date.     

"Janus" supermolecular liquid crystals--giant molecules with hemispherical architectures

Liquid crystals represent a unique class of self-organising systems, which although found in many day-to-day practical material applications, such as displays, are also intimately entwined with living processes. They have the potential, just like living systems, to provide us with a unique vehicle for the development of self-ordering nano- and mesoscopic-engineered materials with specific functional properties. In this article we describe a new concept for the design of self-assembling functional liquid crystals as segmented or "Janus" liquid-crystalline supermolecular materials in the form of structures that contain two different types of mesogenic units, which favour different types of mesophase structure, grafted onto the same star-shaped scaffold to create supermolecules that contain different hemispheres. The materials exhibit chiral nematic and chiral smectic C phases.