Kinetics and thermodynamics of reversible disproportionation–comproportionation in redox triad oxoammonium cations – nitroxyl radicals – hydroxylamines

Kinetics and equilibrium of the acid‐catalyzed disproportionation of cyclic nitroxyl radicals R₂NO^? to oxoammonium cations R₂NO⁺ and hydroxylamines R₂NOH is defined by redox and acid–base properties of these compounds. In a recent work (J. Phys. Org. Chem. 2014, 27, 114‐120), we showed that the kinetic stability of R₂NO^? in acidic media depends on the basicity of the nitroxyl group. Here, we examined the kinetics of the reverse comproportionation reaction of R₂NO⁺ and R₂NOH to R₂NO^? and found that increasing in –I‐effects of substituents greatly reduces the overall equilibrium constant of the reaction K₄. This occurs because of both the increase of acidity constants of hydroxyammonium cations K_3H+ and the difference between the reduction potentials of oxoammonium cations E_R2NO+/R2NO? and nitroxyl radicals E_R2NO?/R2NOH. pH dependences of reduction potentials of nitroxyl radicals to hydroxylamines E_1/3Σ and bond dissociation energies D(O–H) for hydroxylamines R₂NOH in water were determined. For a wide variety of piperidine‐ and pyrrolidine‐1‐oxyls values of pK_3H+ and E_R2NO+/R2NO? correlate with each other, as well as with the equilibrium constants K₄ and the inductive substituent constants σ_I. The correlations obtained allow prediction of the acid–base and redox characteristics of redox triads R₂NO^?–R₂NO⁺–R₂NOH. Copyright © 2014 John Wiley & Sons, Ltd.     

N‐Methylbenzoazacrown ethers with the nitrogen atom conjugated with the benzene ring: the improved synthesis and the reasons for the high stability of complexes with metal and ammonium cations

An improved method for the synthesis of formyl derivatives of N‐methylbenzoazacrown ethers is proposed. They are prepared in up to 68% yields over fewer steps and with a much shorter time required for the last step. The stability constants of complexes formed by N‐methylbenzoazacrown ethers and their structural analogs with alkali metal, alkaline‐earth metal and ammonium cations were determined by ¹H NMR titration in CD₃CN. High stability of complexes of N‐methyl derivatives of benzoazacrown ethers is demonstrated, comparable with or even exceeding the stability of benzocrown‐ether complexes and markedly exceeding the stability of complexes of phenylazacrown ethers with the same macrocycle size. The structures of azacrown ethers and their complexes with Ba(ClO₄)₂ were studied by X‐ray diffraction. A high degree of pre‐organization of N‐methylbenzoazacrown ethers toward the formation of complexes with metal and ammonium cations was noted, which is due to the clear‐cut pyramidal geometry of the nitrogen atom and the orientation of the lone electron pairs (LEPs) of most heteroatoms towards the centre of the macroheterocycle. Copyright © 2009 John Wiley & Sons, Ltd.     

Conformational analysis of 3,3‐dimethyl‐3‐silathiane, 2,3,3‐trimethyl‐3‐silathiane and 2‐trimethylsilyl‐3,3‐dimethyl‐3‐silathiane—preferred conformers,barriers to ring inversion and substituent effects

The first conformational analysis of 3‐silathiane and its C‐substituted derivatives, namely, 3,3‐dimethyl‐3‐silathiane 1 , 2,3,3‐trimethyl‐3‐silathiane 2 , and 2‐trimethylsilyl‐3,3‐dimethyl‐3‐silathiane 3 was performed by using dynamic NMR spectroscopy and B3LYP/6‐311G(d,p) quantum chemical calculations. From coalescence temperatures, ring inversion barriers ΔG^≠ for 1 and 2 were estimated to be 6.3 and 6.8 kcal/mol, respectively. These values are considerably lower than that of thiacyclohexane (9.4 kcal/mol) but slightly higher than the one of 1,1‐dimethylsilacyclohexane (5.5 kcal/mol). The conformational free energy for the methyl group in 2 (?ΔG° = 0.35 kcal/mol) derived from low‐temperature ¹³C NMR data is fairly consistent with the calculated value. For compound 2 , theoretical calculations give ΔE value close to zero for the equilibrium between the 2 ‐Me_ax and 2 ‐Me_eq conformers. The calculated equatorial preference of the trimethylsilyl group in 3 is much more pronounced (?ΔG° = 1.8 kcal/mol) and the predominance of the 3 ‐SiMe_{3 eq} conformer at room temperature was confirmed by the simulated ¹H NMR and 2D NOESY spectra. The effect of the 2‐substituent on the structural parameters of 2 and 3 is discussed. Copyright © 2010 John Wiley & Sons, Ltd.     

Effect of the structure of nitroxyl radicals on the kinetics of their acid‐catalyzed disproportionation

Acid‐catalyzed disproportionation of cyclic nitroxyl radicals R₂NO^? includes the half‐reactions of their oxidation to oxoammonium cations R₂NO⁺ and reduction to hydroxylamines R₂NOH. For many nitroxyl radicals, this reaction is characterized by its ~100% reversibility. Quantitative characteristics of acid–base and redox properties of the whole redox triad may be obtained from research of kinetics and equilibrium of this reaction. Here, we have examined the kinetics for the disproportionation of twenty piperidine‐, pyrroline‐, pyrrolidine‐, and imidazoline nitroxyl radicals in aqueous H₂SO₄, and interpreted it in terms of the excess acidity function X. The rate‐limiting step of this reaction is R₂NO^? oxidation by its protonated counterpart R₂NOH^+?. Kinetic stability of R₂NO^? in acidic media depends on the basicity of nitroxyl group. This basicity is influenced predominantly by protonation of another, more basic group in radical structure, and its proximity to nitroxyl group. The discovered estimates of pK values for radical cations R₂NOH^+? (from ?5.8 to ?12.0) indicate a very low basicity of nitroxyl groups in all commonly used R₂NO^?. For the first time, a linear correlation is obtained between the one‐electron reduction potentials of oxoammonium cations and the basicity of nitroxyl groups of related radicals. Copyright © 2013 John Wiley & Sons, Ltd.     

Conformational analysis and inversion process in some perhydrodipyrido[1,2‐b;1′2′‐e]‐1,4,2,5‐ dioxadiazines

The stereoselectivity in the cyclodimerization of several six‐membered cyclic nitrones has been investigated. The configurational/conformational analysis of the dimers (i.e. perhydrodipyrido[1,2‐b;1′2′‐e]‐1,4,2,5‐dioxadiazines) has been carried out by NMR spectroscopy. The NMR spectra of the dimers at lower temperatures indicated the presence of either a single or two invertomer(s). The nitrogen inversion barriers are determined using complete line–shape analysis. The invertomer ratios have been used to estimate the relative energies associated with the cis and trans ring fusion in these tricycles. A mechanistic rationale for the observed stereochemistry of the dimerization process has been presented. Copyright © 2009 John Wiley & Sons, Ltd.     

The analysis of nitrogen rotational and vibrational bands in a helium microhollow gas discharge

Emission spectroscopy is applied to measure the gas temperature T _g and the vibrational distribution of N₂ (C ³Π_u) and N₂ ⁺(B ²Σ_u ⁺) excited states from a helium microhollow gas discharge (MHGD) at atmospheric pressure. The rotational temperature T _rot of N₂ ⁺ is determined from relative intensity of the R‐branch lines of the N₂ ⁺(B ²Σ_u ⁺–X ²Σ_g ⁺) bands at 427.81 and 419.91 nm and the well‐known Boltzmann plot (BP). Using the same diagnostic technique, the rotationally resolved N₂(C ³Π_u–B ³Π_g) band at 380.49 nm is used to measure T _rot. Under our experimental conditions, T _g is equal to T _rot = 550–650 K for nitrogen molecules and shows a slight increase with the discharge current in the current range 3–10 mA. From the intensity ratio of two consecutive vibrational bands of the same sequence, the N₂(C ³Π_u) and N₂ ⁺(B ²Σ_u ⁺) vibrational temperature T _vib = 3,700–4,000 K is determined. It has been found that N₂ ⁺(B ²Σ_u ⁺) ions have non‐Boltzmann distribution in the helium MHGD, while N₂(C ³Π_u) molecules are populated according to the Boltzmann distribution. Following the Franck–Condon principle, the vibrational distribution of the ground state of N₂(X ¹Σ_g ⁺) molecules has been determined from the N₂(C ³Π_u) distribution using the inversion matrix of elements q _XC(ν ,ν ′).     

Dinitrogen Fixation of Microbe-Plant Associations as Affected by Nitrate and Ammonium Supply

Abstract

The dinitrogen fixation activity of Azospirillum sp., and Pantoea agglomerans strains was determined by ¹⁵N₂ incorporation after incubation with ¹⁵N₂ labeled air or/and by acetylene reduction. These bacterial strains were able to fix N₂ both in pure culture and in association with wheat plants in hydroponics. Nitrogenase activity of Azospirillum sp., in pure culture was more rapidly inhibited by the addition of NH₄ ⁺ than NO₃ ^?. The N₂ fixation of P. agglomerans decreased only by NH₄ ⁺ -addition, but was stimulated by NO₃ ^?. Nitrogen fixation in association with wheat plants remained unaffected by both N compounds. However, nitrogen derived from the atmosphere (N_dfa) contributed only very little to the overall nitrogen nutrition of the plants.     

Conformational analysis of 4,4‐dimethyl‐4‐silathiane and its S‐oxides

4,4‐Dimethyl‐4‐silathiane and its S‐oxides [n = 0 ( 1 ), 1 ( 2 ), 2 ( 3 )] were studied experimentally by variable temperature dynamic NMR spectroscopy down to 103 K and the frozen ring inversion was revealed for all three compounds. The barriers for the degenerate ring inversion in 1 and 3 were measured to be 4.8 and 5.0 kcal/mol at the coalescence temperatures of 111 and 116 K, respectively, and practically coincide with the calculated barriers of 4.60 kcal/mol in 1 and 4.46 kcal/mol in 3 . The frozen equilibrium mixture 2‐ax/2‐eq contains 37% of the 2‐ax and 63% of the 2‐eq conformer. The ring inversion barrier proved to be ca. 4.8 kcal/mol. Calculations at the B3LYP/6‐311+G(d,p) level of theory showed the 2‐ax conformer to be 0.90 kcal/mol more stable than the 2‐eq conformer in the gas phase whereas in solution the relative stability of the conformers calculated using the PCM model at the same level of theory is inverted to become 0.19 (in CHCl₃) or 0.36 kcal/mol (in DMSO) in favor of the 2‐eq conformer. The chair–chair interconversion mechanism of sulfoxide 2 includes two intermediate energetically equivalent 1,4‐twist forms and the 2,5‐boat transition state: 2‐ax (chair) ? 2 (1,4‐twist) ? [ 2 (2,5‐boat)]^≠ ? 2 (1,4‐twist) ? 2‐eq (chair). The calculated ring inversion barriers are 5.1 ( 2‐ax → 2‐eq ) and 4.2 kcal/mol ( 2‐eq → 2‐ax ) in the gas phase, and 4.03 and 4.22 kcal/mol, respectively, in chloroform. Copyright © 2011 John Wiley & Sons, Ltd.     

Incorporation of 15NO2 Nitrogen into Individual Amino Acids by Sunflowers Using Gc-C-Irms

Abstract

The nitrogen isotopic composition of individual amino acids in sunflower leaves after exposures to ¹⁵NO₂ in the range of ambient NO₂ concentrations (5–37 ppb) was analysed by Gas Chromatography-Combustion-Isotope Ratio Mass Spectrometry (GC-C-IRMS). Amino acids as well as the amides glutamine and asparagine were converted with MTBSTFA (N-methyl-N-(tert.-butyldimethylsilyl)-tri-fluoroacetamid) in pyridine to their corresponding TBDMS derivatives (N, O-tert.-butyldimethylsilyl) in a simple one-step silylation reaction. The derivatized amino acids were separated by gas chromatography, combusted on-line, and the products were sent continuously to an isotope ratio mass spectrometer. Accurate measurements were obtained, when more than 7 nmol N₂ were introduced into the ion source of the mass spectrometer per gas chromatographically separated and combusted compound. No interferences of the silicate and fluor containing derivatization agents on the performance of the system were observed.

In the range of ambient NO₂ concentrations sunflower leaves predominately incorporate the nitrogen derived from atmospheric NO₂ into soluble amino acids. The highest δ¹⁵N values were measured for alanine. The ¹⁵N enrichments of the detectable amino acids increased with increasing ¹⁵NO₂ concentration.     

DC Townsend Discharge in Nitrogen: Temperature‐Dependent Phenomena

Low‐current Townsend discharge in nitrogen has been studied in the temperature range of T = 100–300 K in a semiconductor‐gas‐discharge structure. It was found that the sustaining voltage U_S increases with time when a current is passed through the structure at low T. This effect was not observed at room temperature. A hypothesis is put forward that a film of a neutral phase of nitrogen is formed on the electrodes under cryogenic discharge conditions. The presence of the condensed thin‐film phase leads to a decrease in the secondary electron emission from the electrode and to a corresponding increase in U_S. A possible mechanism of the phenomenon is associated with the formation of large neutral aggregates in the form of [N⁺₂(N₂)_n]^– in the gas discharge volume. The condensation of these aggregates seems to yield a phase that is comparatively stable at cryogenic temperatures (© 2012 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Kinetics and mechanism of the reaction of alkoxymethylidene malonate and malononitrile with hydrazines and anilines

The kinetics and mechanism of the nucleophilic vinylic substitution of dialkyl (alkoxymethylidene)malonates (alkyl: methyl, ethyl) and (ethoxymethylidene)malononitrile with substituted hydrazines and anilines R¹–NH₂ (R¹: (CH₃)₂N, CH₃NH, NH₂, C₆H₅NH, CH₃CONH, 4‐CH₃C₆H₄SO₂NH, 3‐ and 4‐X‐C₆H₄; X: H, 4‐Br, 4‐CH₃, 4‐CH₃O, 3‐Cl) were studied at 25 °C in methanol. It was found that the reactions with all hydrazines (the only exception was the reaction of (ethoxymethylidene)malononitrile with N,N‐dimethylhydrazine) showed overall second‐order kinetics and k_obs were linearly dependent on the hydrazine concentration which is consistent with the rate‐limiting attack of the hydrazine on the double bond of the substrate. Corresponding Brønsted plots are linear (without deviating N‐methyl and N,N‐dimethylhydrazine), and their slopes (β_Nuc) gradually increase from 0.59 to 0.71 which reflects gradually increasing order of the C–N bond formed in the transition state. The deviation of both methylated hydrazines is probably caused by the different site of nucleophilicity/basicity in these compounds (tertiary/secondary vs. primary nitrogen). A somewhat different situation was observed with the anilines (and once with N,N‐dimethylhydrazine) where parabolic dependences of the kinetics gradually changing to linear dependences as the concentration of nucleophile/base increases. The second‐order term in the nucleophile indicates the presence of a steady‐state intermediate ‐ most probably T^±. Brønsted and Hammett plots gave β_Nuc = 1.08 and ρ = ?3.7 which is consistent with a late transition state whose structure resembles T^±. Copyright © 2013 John Wiley & Sons, Ltd.     

Not All Fluorescent Nanodiamonds Are Created Equal: A Comparative Study

Fluorescent nanodiamonds (FNDs) are vital to many emerging nanotechnological applications, from bioimaging and sensing to quantum nanophotonics. Yet, understanding and engineering the properties of fluorescent defects in nanodiamonds remain challenging. The most comprehensive study to date is presented, of the optical and physical properties of five different nanodiamond samples, in which fluorescent nitrogen‐vacancy (NV) centers are created using different fabrication techniques. The FNDs' fluorescence spectra, lifetime, and spin relaxation time (T₁) are investigated via single‐particle confocal fluorescence microscopy and in ensemble measurements in solution (T₁ excepted). Particle sizes and shapes are determined using scanning electron microscopy and correlated with the optical results. Statistical tests are used to explore correlations between the properties of individual particles and also analyze average results to directly compare different fabrication techniques. Spectral unmixing is used to quantify the relative NV charge‐state (NV^? and NV⁰) contributions to the overall fluorescence. A strong variation is found and quantified in the properties of individual particles within all analyzed samples and significant differences between the different particle types. This study is an important contribution toward understanding the properties of NV centers in nanodiamonds. It motivates new approaches to the improved engineering of NV‐containing nanodiamonds for future applications.     

Paramagnetic Centres in Be-Doped MgO Single Crystals

Using a variation of arc-fusion technique, Be-doped MgO single crystals were grown, in which about 0.01% of the cation sites are occupied by Be^2?. This gives rise to a variety of Be-containing paramagnetic centres, easily detectable by EPR. The models of the centres are proposed and the values of their spin-Hamiltonian parameters are determined and discussed. Two of them—V_OH-Be and H-Be centres—stem from well-known paramagnetic centres such as V_OH, and interstitial H atom. In addition, because of the non-central position of the ion, an isolated Be^2? can trap a hole forming a Be^2?O^? centre. The symmetry of the Be^2?O^? centre at T<30K is rhombic, at a higher temperature a motional averaging of the spectrum takes place. It is shown that unusually for V centres physical properties of the V_OH-Be centre (a relatively small g-factor anisotropy and high thermal stability, optical absorption energy and spin-lattice relaxation time) arc caused by the non-central position of the Be^2? ion.     

大气等离子体中氮氧化物粒子行为的数值模拟

利用一个空间零维大气等离子体模型对其中的氮氧化物在不同电离度情况下的变化规律进行了数值模拟,得到了放电后不同初始电子密度下的氮氧化物(包括NO,NO⁺,NO₂,NO₂⁺,N₂O,N₂O⁺,NO₃和N₂O₅)及影响其产消的主要反应物N和O₃的密度随时间的演化规律.结果表明,电子初始密度n_e0=10⁹ cm^-3时,NO和NO₂的去除率较高,氮氧化物总密度较小,最适合消除氮氧化物污染.同时,还对N和O₃随电离度变化的行为进行了分析. 关键词： 大气等离子体 氮氧化物 电离度 数值模拟     

Local structural order in carbonic acid polymorphs: Raman and FT‐IR spectroscopy

Two different polymorphs of carbonic acid, α‐ and β‐H₂CO₃, were identified and characterized using infrared spectroscopy (FT‐IR) previously. Our attempts to determine the crystal structures of these two polymorphs using powder and thin‐film X‐ray diffraction techniques have failed so far. Here, we report the Raman spectrum of the α‐polymorph, compare it with its FT‐IR spectrum and present band assignments in line with our work on the β‐polymorph [Angew. Chem. Int. Ed. 48 (2009) 2690–2694]. The Raman spectra also contain information in the wavenumber range ∼90–400 cm⁻¹, which was not accessible by FT‐IR spectroscopy in the previous work. While the α‐polymorph shows Raman and IR bands at similar positions over the whole accessible range, the rule of mutual exclusion is obeyed for the β‐polymorph. This suggests that there is a center of inversion in the basic building block of β‐H₂CO₃ whereas there is none in α‐H₂CO₃. Thus, as the basic motif in the crystal structure we suggest the cyclic carbonic acid dimer containing a center of inversion in case of β‐H₂CO₃ and a catemer chain or a sheet‐like structure based on carbonic acid dimers not containing a center of inversion in case of α‐H₂CO₃. This hypothesis is strengthened when comparing Raman active lattice modes at < 400 cm⁻¹ with the calculated Raman spectra for different dimers. In particular, the intense band at 192 cm⁻¹ in β‐H₂CO₃ can be explained by the inter‐dimer stretching mode of the centrosymmetric RC(OHO)₂ CR entity with ROH. The same entity can be found in gas‐phase formic acid (RH) and in β‐oxalic acid (RCOOH) and produces an intense Raman active band at a very similar wavenumber. The absence of this band in α‐H₂CO₃ confirms that the difference to β‐H₂CO₃ is found in the local coordination environment and/or monomer conformation rather than on the long range. Copyright © 2011 John Wiley & Sons, Ltd.     

Calibration method at the N K‐edge using interstitial nitrogen gas in solid‐state nitrogen‐containing inorganic compounds

The standard method of soft X‐ray beamline calibration at the N K‐edge uses the ν = 0 peak transition of gas‐phase N₂. Interstitial N₂ gas trapped or formed within widely available solid‐state ammonium‐ and amine‐containing salts can be used for this purpose, bypassing gas‐phase measurements. Evidence from non‐nitrogen‐containing compounds (KH₂PO₄) and from He‐purged ammonium salts suggest that production of N₂ gas is through beam‐induced decomposition. Compounds with nitrate or nitrite as anions produce coincident features and are not suitable for this calibration method.     

Nucleophilic substitution reactions promoted by oligoethylene glycols: a mechanistic study of ion‐pair SN2 processes facilitated by Lewis base

We present a mechanistic study for nucleophilic substitution (S_N2) reactions facilitated by multifunctional n‐oligoethylene glycols (n‐oligoEGs) using alkali metal salts MX (M⁺ = Cs⁺, K⁺, X^– = F^–, Br^–, I^–, CN^–) as nucleophilic agents. Density functional theory method is employed to elucidate the underlying mechanism of the S_N2 reaction. We found that the nucleophiles react as ion pairs, whose metal cation is ‘coordinated’ by the oxygen atoms in oligoEGs acting as Lewis base to reduce the unfavorable electrostatic effects of M⁺ on X^–. The two terminal hydroxyl (?OH) function as ‘anchors’ to collect the nucleophile and the substrate in an ideal configuration for the reaction. Calculated barriers of the reactions are in excellent agreement with all experimentally observed trends of S_N2 yields obtained by using various metal cations, nucleophiles and oligoEGs. The reaction barriers are calculated to decrease from triEG to pentaEG, in agreement with the experimentally observed order of efficiency (triEG < tetraEG < pentaEG). The observed relative efficiency of the metal cations Cs⁺ versus K⁺ is also nicely demonstrated (larger [better] barrier [efficiency] for Cs⁺ than for K⁺). We also examine the effects of the nucleophiles (F^–, Br^–, I^–, CN^–), finding that the magnitudes of reaction barriers are F^– > CN^– > Br^– > I^–, elucidating the observation that the yield was lowest for F^–. It is suggested that the role of oxygen atoms in the promoters is equivalent to that of –OH group in bulky alcohols (tert‐butyl or amyl‐alcohol) for S_N2 fluorination reactions previously studied in our lab. Copyright © 2012 John Wiley & Sons, Ltd.     

4‐Alkyl‐2,2,6,6‐tetramethyl‐1,4,2,6‐oxaazadisilinanes: synthesis,structure, and conformational analysis

4‐Alkyl‐2,2,6,6‐tetramethyl‐1,4,2,6‐oxaazadisilinanes RN[CH₂Si(Me)₂]₂O [R = Me ( 1 ), i‐Pr ( 2 )] were synthesized by two methods which provided good yields up to 84%. Low temperature NMR study of compounds ( 1 ) and ( 2 ) revealed a frozen ring inversion with the energy barriers of 8.5 and 7.7 kcal/mol at 163 and 143 K, respectively, which is substantially lower than that for their carbon analog, N‐methylmorpholine. DFT calculations performed on the example of molecule ( 1 ) showed that N? Me_ax conformer to exist in the sofa conformation with the coplanar fragment C? Si? O? Si? C, and its N? Me_eq conformer in a flattened chair conformation. Copyright © 2009 John Wiley & Sons, Ltd.     

Enhancement of minority carrier lifetime in GaAs1? x P x ( x =0.4; 0.65) by nitrogen implantation

Minority carrier lifetimes in nitrogen implanted GaAs_1-x P _x (x=0.4; 0.65) were measured at 77K by an optical phase shift method as a function of nitrogen dose and annealing temperature in order to investigate the dependence of the lifetime on the concentration of nitrogen isoelectronic traps. A large increase in the lifetime was observed after nitrogen implantation followed by annealing at and above 800°C. The maximum lifetimes were 22ns for GaAs_0.35P_0.65 and 6.7 ns for GaAs_0.6P_0.4. They were obtained by implantation to a dose of 5×10¹³ cm⁻² in GaAs_0.35P_0.65 and 10¹³ cm⁻² in GaAs_0.6P_0.4. The lifetime after nitrogen implantation followed by annealing was longer by a factor of 6–7 than that of the unimplanted sample.