Synthesis,stereochemistry, and spectroscopic characterization of [Rh(η4-cod){(R)-2-(X-benzaldimine)-2-phenylethanol-κ 2 N,O}](acetate) (X = H; 2,4-dimethoxy)

Condensation of X-benzaldehyde with (R)-2-amino-2-phenylethanol gives the enantiopure Schiff bases (R)-2-(X-benzaldimine)-2-phenylethanol (X?=?H, HL1; 2,4-dimethoxy, HL2). The Schiff bases coordinate with dinuclear [Rh(η⁴-cod)(µ-O₂CCH₃)]₂ to afford the cationic complexes [Rh(η⁴-cod){(R)-2-(benzaldimine)-2-phenylethanol-κ ² N,O}](acetate), [Rh(η⁴-cod)(HL1)](ac) (1) and [Rh(η⁴-cod){(R)-2-(2,4-dimethoxy-benzaldimine)-2-phenylethanol-κ ² N,O}](acetate), [Rh(η⁴-cod)(HL2)](ac) (2), respectively. The Schiff bases and complexes are isolated as solids in good yields and characterized by elemental analysis, IR, UV-Vis, ¹H/¹³C-NMR, mass spectroscopy, and polarimetry.     

Rate constants for the reactions of Cl atoms with HCOOH and with HOCO radicals

Rate constants have been measured at room temperature for the reactions of Cl atoms with formic acid and with the HOCO radical: Cl + HCOOH → HCl + HOCO (R1) Cl + HOCO → HCl + CO₂ (R2) Cl atoms were generated by flash photolysis of Cl₂ and the progress of reaction was followed by time‐resolved infrared absorption measurements using tunable diode lasers on the CO₂ that was formed either in the pair of reactions ( R1 ) plus ( R2 ), or in reaction ( R1 ) followed by O₂ + HOCO → HO₂ + CO₂ (R3) In a separate series of experiments, conditions were chosen so that the kinetics of CO₂ formation were dominated either by the rate of reaction ( R1 ) or by that of reactions ( R1 ) and ( R2 ) combined. The results of our analysis of these experiments yielded: k₁ = (1.8₃ ± 0.12) × 10⁻¹³ cm³ molecule⁻¹ s⁻¹ k₂ = (4.8 ± 1.0) × 10⁻¹¹ cm³ molecule⁻¹ s⁻¹ © 2000 John Wiley & Sons, Inc. Int J Chem Kinet 32: 85–91, 2000     

Structure of lipid A from the marine gram-negative bacterium <Emphasis Type="Italic">Pseudoalteromonas nigrifaciens</Emphasis> IAM 13010<Superscript>T</Superscript>

The structure of lipid A from the marine γ-proteobacterium Pseudoalteromonas nigrifaciens IAM 13010^T that was prepared by hydrolysis of the corresponding lipopolysaccharide by acetic acid (1%) was determined by chemical analysis, ¹³C NMR spectroscopy, and MALDI/TOF and LSIMS mass spectrometry. It was shown that lipid A is a β-1,6-bonded disaccharide of glucosamine that is substituted by two phosphoric acids (in the C1 and C4′ positions), two (R)-3-hydroxyalkanoic (normal and branched) acids with ester bonding (at the C3 and C3′-positions), and (R)-3-hydroxydodecanoic and (R)-3-dodecanoyloxydodecanoic acids (both with amide bonding at C2′ and C2, respectively). It was hypothesized that this type of structure is typical of lipid A from bacteria of the genus Pseudoalteromonas in general. __________ Translated from Khimiya Prirodnykh Soedinenii, No. 5, pp. 425–429, September–October, 2007.     

Comparison Of Highly Sensitive Sandwich Enzyme Immunoassay And Radioimmunoassay For Human Ferritin

Abstract

A highly sensitive sandwich enzyme immunoassay (EIA) for human ferritin was developed using rabbit anti-ferritin IgG-coated polystyrene balls and affinity-purified rabbit anti-ferritin Fab' labelled with β-D-galactosidase from Escherichia coli and compared with the corresponding sandwich radioimmuno assay (RIA). The specific and nonspecific binding of labelled anti-ferritin to the polystyrene balls were examined in relation to the amount of labelled anti-ferritin used per tube, and the highest sensitivity of each immunoassay (0.2 amol/tube in EIA and 2.5 amol/tube in RIA) was obtained by using the minimal amount of the corresponding labelled anti-ferritin (0.71 fmol in EIA and 4.5 fmol=4436 cpm in RIA) which gave a reliable calibration curve. The sandwich RIA was less sensitive, largely because the specific radioactivity of ¹²⁵I-labelled anti-ferritin used was not sufficiently high.     

Nucleophilic addition of bifunctional sulfimidosulfides to platinum(<Emphasis Type="SmallCaps">IV</Emphasis>)-coordinated nitriles

Reactions of the platinum(IV) nitrile complexes [PtCl₄(RCN)₂] (R = Me, CH₂Ph, Ph) with 1,2- and 1,4-PhS(=NH)C₆H₄SPh in CH₂Cl₂ afforded addition products of sulfimides and coordinated nitriles, viz., the [PtCl₄{NH=C(R)N=S(Ph)(C₆H₄SPh)}₂] complexes. The latter were isolated in 75—90% yields and characterized by elemental analysis, positive-ion FAB mass spectrometry, IR spectroscopy, and ¹H and ¹³C¹H NMR spectroscopy. The temperature dependence of the ¹H NMR spectra of the model [PtCl₄{NH=C(R)N=SPh₂}₂] complexes (R = Me, Et) in CD₂Cl₂ studied in a temperature range from +40 to -70 °C demonstrated that E—Z isomerization of the ligands is a dynamic process in a range from +40 to -10 °C. The activation free energy of this process was calculated.Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 8, pp. 1618–1622, August, 2004.     

A study of biodegradation/γ-irradiation on the degradation of p-chloronitrobenzene

A microbial strain, Vagococcus sp. B32, was isolated and applied to degrade p-chloronitrobenzene (p-CNB) in aqueous solutions. Three degradation methods: biodegradation, direct γ-irradiation and ⁶⁰Co-γ pre-irradiation with biodegradation by B32 were carried out. The decrease of p-CNB and the net increase of Cl⁻ were investigated to evaluate the degradation efficiency. The preliminary results showed that the combined method of pre-irradiation with biodegradation of B32 was more effective than the two others.     

Labelling spectroscopy on argonhydride and argondeuteride in a plasma beam penning tube

Rare gas hydride molecules and triatomic hydrogen molecules were produced in a Cossart-type plasma beam Penning tube specially designed for laser spectroscopic work. A cw dye laser was used to stimulate transitions from theB ² rovibrational levels to theA ²⁺ levels of argonhydride (⁴⁰ArH) and argondeuteride (⁴⁰ArD). The transitions were detected by measuring the decrease of the spontaneous emission from the upper levels, which clearly shows the expected population inversion between the two participating electronic states. With this first laserspectroscopic work on argonhydride and argon deuteride, the classification of the lines of theB ² A ²⁺ band as given by Johns 1970 could be checked and was found to be consistent*. Furthermore theQ branches of these bands for ArH and ArD could be completely resolved into their single lines and their wavelengths were measured. The latter allowed the difference between the rotational constants of theA andB electronic states to be directly determined. The method was also applied to triatomic hydrogen. D₃. It should be useful for classifying more complicated bands of ArH and of KrH and XeH, which can also be produced in this tube.In later theoretical work theB ² state was called 2² state [13] andE ² state [12], respectively     

Solid state N and C NMR study of dioxomolybdenum (VI) complexes of Schiff bases derived from trans-1,2-cyclohexanediamine

The ¹³C, ¹⁵N CP MAS NMR and FT-IR spectra of dioxomolybdenum (VI) complexes of trans-N,N′-bis-(R-salicylidene)-1,2-cyclohexanediamine (R=H, R=3,5-diCl, R=3,5-diBr, R=4,6-diOCH₃), trans-N,N′-bis-(2-OH-naphthylidene)-1,2-cyclohexanediamine and trans-N-(salicylidene)-N′-(2-OH-naphthylidene)-1,2-cyclohexanediamine have been measured. Comparative analysis of the NMR and IR spectra of the complexes with those of the corresponding ligands has shown that the complexation of the di-Schiff bases leads to changes in the conformation of the ligands and the charge redistribution. The asymmetric structure and non-planar structure of the complexes have been suggested.     

New N-nitrosoamines. 1. Synthesis and nitrosative cleavage of the Mannich bases derived from nitrogen-containing heterocycles and primary aliphatic amines

The reactions of isatin, benzotriazole, and succinimide with formaldehyde and methylamine yield monoamines RCH₂N(Me)CH₂R and methylenediamines RCH₂N(Me)CH₂N(Me)CH₂R. The use of ethylenediamine as the amino component affords N,N"-disubstituted imidazolidines, while the reactions with 3-aminopropan-1-ol give N-substituted tetrahydro-1,3-oxazines. RCH₂NBuⁱ ₂ was obtained from succinimide, formaldehyde, and diisobutylamine. Nitrosative cleavage of the amines obtained was studied; it was shown that monoamines and methylenediamines give N-nitrosoamines RCH₂N(NO)Me, which were structurally characterized by X-ray diffraction analysis. RCH₂NBuⁱ ₂ affords diisobutylnitrosamine, while imidazolidines transform into dinitroso compounds RCH₂N(NO)CH₂CH₂N(NO)CH₂R.     

Zur Synthese von Human-Big-Gastrin I und seinem 32-Leucin-Analogon

The preparation of the pure tetratriacontapeptide amide 2 (human big gastrin I) and the analogue Leu³²-human big gastrin I from the crude synthetic materials obtained after deblocking of the overall protected tetratriacontapeptide amide derivatives by means of trifluoroacetic acid is described. The criteria for homogeneity obtained by chromatographic, electrophoretic, enzymatic and spectroscopic methods are reported.

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Abkürzungen HBG-I Human-Big-Gastrin I - LHBG-I 32-Leucin-Human-Big-Gastrin I - HBG-[1-20] N-terminale Teilsequenz [1–20] des Human-Big-Gastrins I - HG-17-I Human-Gastrin I - LHG-17-I 15-Leucin-Human-Gastrin I - HG-13-I Human-Minigastrin I - LHG-13-I 11-Leucin-Human-Minigastrin I Es werden hier die von der IUPAC-IUB Commission on Biochemical Nomenclature empfohlenen Abkürzungen für Aminosäuren und Schutzgruppen verwendet.Andere Abkürzungen.Anm.: Auf Grund der kürzlich erfolgten Strukturkorrektur (R. A. Gregory, H. J. Tracy, J. I. Harris, M. J. Runswick, S. Moore, G. W. Kenner undR. Ramage, Hoppe-Seylers Z. physiol. Chem.360, 73, 1979) sind HG-13-I und LHG-13-I neuderdings richtiger als Des-1-Tryptophan-Human-Minigastrin I bzw. [Des-1-Tryptophan]-11-Leucin-Human-Minigastrin I zu bezeichnen].Vorläufige Mitt.:E. Wünsch, G. Wendlberger, A. Hallett, E. Jaeger, S. Knof, L. Moroder, R. Scharf, I. Schmidt, P. Thamm undL. Wilschowitz, Z. Naturforsch.32c, 495 (1977).3. Mitt.:G. Wendlberger, L. Moroder, A. Hallett undE. Wünsch, Mh. Chem.110, 1407 (1979).     

Asymmetric synthesis ofS-alkyl-substituted (R)-cysteinesvia a chiral NiII complex of the Schiff's base of dehydroalanine with (S)-2-N-(N-benzylprolyl)aminobenzophenone

An efficient procedure was developed for the asymmetric synthesis ofS-alkyl derivatives of (R)-cysteine by nucleophilic addition of alkanethiols (BuⁿSH, Bu^tSH, ortert-C₅H₁₁SH) to the C=C bond of the dehydroalanine fragment in the Ni^II complex of the Schiff's base of Δ-Ala with (S)-2-N-(N-benzylprolyl)aminobenzophenone [(S)-BPB-Δ-Ala]Ni^II. Under conditions of thermodynamic control of the reaction, the diastereomeric excess of the complexes with the (S.R)-configuration was 88–96%. After decomposition of the complexes,(R)-S-butylcysteine,(R)-S-tert-butylcysteine, and(R)-S-tert-pentylcysteine were isolated with an enantiomeric purity of >97%. Published inIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 8, pp. 1467–1470, August, 2000.     

Power of isotopic fine structure for unambiguous determination of metabolite elemental compositions: In silico evaluation and metabolomic application

In mass spectrometry (MS)-based metabolomics studies, reference-free identification of metabolites is still a challenging issue. Previously, we demonstrated that the elemental composition (EC) of metabolites could be unambiguously determined using isotopic fine structure, observed by ultrahigh resolution MS, which provided the relative isotopic abundance (RIA) of ¹³C, ¹⁵N, ¹⁸O, and ³⁴S. Herein, we evaluated the efficacy of the RIA for determining ECs based on the MS peaks of 20,258 known metabolites. The metabolites were simulated with a ≤25% error in the isotopic peak area to investigate how the error size effect affected the rate of unambiguous determination of the ECs. The simulation indicated that, in combination with reported constraint rules, the RIA led to unambiguous determination of the ECs for more than 90% of the tested metabolites. It was noteworthy that, in positive ion mode, the process could distinguish alkali metal-adduct ions ([M + Na]⁺ and [M + K]⁺). However, a significant degradation of the EC determination performance was observed when the method was applied to real metabolomic data (mouse liver extracts analyzed by infusion ESI), because of the influence of noise and bias on the RIA. To achieve ideal performance, as indicated in the simulation, we developed an additional method to compensate for bias on the measured ion intensities. The method improved the performance of the calculation, permitting determination of ECs for 72% of the observed peaks. The proposed method is considered a useful starting point for high-throughput identification of metabolites in metabolomic research.     

Reactions of GeMe2-bridged dicyclopentadienes with molybdenum carbonyl: formation of germylidyne trimolybdenum clusters

In thermal reactions of the doubly bridged dicyclopentadienes (C₅H₃R(SiMe₂))(C₅H₃R(GeMe₂)) (R=H (1), ^tBu (5)) with Mo(CO)₆, the bridging GeMe₂ is cleaved to give the corresponding degermylated products [(η⁵-C₅H₃R)₂(SiMe₂)]Mo₂(CO)₆ (3, rac-7), or both GeMe₂ and SiMe₂ are cleaved to afford the nonbridged products [(η⁵-C₅H₄R)Mo(CO)₃]₂ (2, 6). The reactions also produce germylidyne trimolybdenum clusters [(η⁵-C₅H₃R)₂(SiMe₂)](η⁵-C₅H₄R)[Mo(CO)₂]₃(μ₃-GeMe) (4, rac-/meso-7) containing the Mo₃(μ₃-GeMe) units. Similarly, reaction of the single GeMe₂-bridged dicyclopentadienes (C₅H₅)₂GeMe₂ (9) with Mo(CO)₆ also results in the degermylated 2, as well as the similar trimolybdenum cluster [(η⁵-C₅H₅)Mo(CO)₂]₃(μ₃-GeMe) (10). The molecular structures of 4 and trans-5 were determined by X-ray diffraction.     

Amino-substituted gem-diphosphonic acids: structures of complexes with divalent metal cations in aqueous solutions

A comparative study of complexation of acids R₂N(CH₂)_nCR"(PO₃H₂)₂ (R = H or Me; R" = OH or H; n = 1 or 2) with the Ca²⁺, Mg²⁺, Zn²⁺, and Cu²⁺ cations in aqueous solutions was carried out by vibrational (IR and Raman) and electronic spectroscopy using the data of ESR spectroscopy and conformational analysis (molecular mechanics). The MOPCPO chelate ring is formed in all ML and MHL complexes. The involvement of the N atom in coordination was found only in the Cu²⁺ complexes and is determined by the structure of the ligand. The relationship between the stability constants and the structures of the complexes in aqueous solutions is analyzed.     

1H NMR parameters of the N-terminal 13-residue C-peptide of ribonuclease in aqueous solution

The ¹H NMR chemical shifts and the spin-spin coupling constants of the non-exchangeable protons of the N-terminal 13-residue C-peptide of ribonuclease A, obtained by cleavage of the enzyme with cyanogen bromide, have been measured in a 5 mM solution in D₂O (pH 3.0, 24°C) at 360 MHz. The titration parameters for end groups (Lys-1 and homo-Ser-13) and side chains (Lys-1, Glu-2, Lys-7, Glu-9 and His-12) have been determined. The chemical shifts, their temperature coefficients and the vicinal coupling constants, ³J(HNCH-α), for the exchangeable NH protons have been measured in a 5 mM solution in D₂O/H₂O (1:9 v/v) at pH 3.0. An assignment of observed signals to individual residue protons based on characteristic shifts, standard double resonance experiments, spectral simulations and titration shifts is proposed. All experimental evidence indicates that under the conditions studied the C-peptide is in a random coil form.     

Alkyl alkynylphosphonites in the Kabachnik-Fields reaction

O-Ethyl alkynylphosphonites [EtOP(O)(H)CэCR] (1 and2) react withp-bromobenzaldehyde and benzylamine to form the usual acyclic products of the Kabachnik-Fields reaction or phosphorus-containing heterocycles depending on the nature of the substituent R at the β-carbon atom of the acetylene fragment of phosphonite. In the case of R=Bu^t,O-ethyl (α-benzylamino-p-bromobenzyl)(3,3-dimethylbut-1-ynyl)phosphinate (3) was obtained. In the case of R=Me, 1-benzyl-2-p-bromophenyl-3-ethoxy-5-methyl-3-oxo-Δ⁴-1,3-λ⁵-azaphospholine (4) was formed. Compounds3 and4 were also synthesized by the reactions of the above-mentioned phosphonites with the corresponding azomethines. Dedicated to the memory of Academician M. I. Kabachnik on his 90th birthday. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 10, pp. 2104–2106, October, 1998.     

Infrared spectroscopy and the structure of rare-earth chromium borates RCr<Subscript>3</Subscript>(BO<Subscript>3</Subscript>)<Subscript>4</Subscript> (R = La-Er)

Rare-earth chromium borates RCr₃(BO₃)₄, where R = La-Er, obtained as a result of spontaneous solutionmelt crystallization and belonging to two polytypic modifications (R32 (D₃⁷) and C2/c (C _2h ⁶) space groups) are studied by infrared spectroscopy with the factor group analysis of vibrations. Borates with R = La-Nd are shown to crystallize in the monoclinic C2/c space group. Borates with R = Sm-Er in the 1:1 ratio of batch and solvent form rhombohedral (R32 space group) and monoclinic (C2/c space group) phases at the 2.3:1 ratio, except EuCr₃(BO₃)₄ and GdCr₃(BO₃)₄ that have the rhombohedral structure under all crystallization conditions. Both rhombohedral and monoclinic polytypes may contain oppositely ordered layers. Y-, Tm-, Yb-, Lu-chromium borates are not formed.     

Understanding the reactivity and regioselectivity of [3 + 2] cycloaddition reactions between substituted nitrile oxides and methyl acrylate. A molecular electron density theory study

The [3 + 2] cycloaddition (32CA) reactions of three nitrile oxides (NOs) (R‐CNO; R = Ph, CO₂Me, and Br) with methyl acrylate (MA) have been theoretically studied within the molecular electron density theory. Topological analysis of the electron localization function of these NOs permits to establish that they will participate in zw‐type 32CA reactions. Analysis of the conceptual DFT indices indicates that these zw‐type 32CA reactions will have a low polar character as a consequence of the relatively low electrophilic character of MA and the low nucleophilic character of NOs, in agreement with the global electron density transfer computed at the corresponding TSs. The activation enthalpies associated with these 32CA reactions range from 8.2 to 12.7 kcal·mol^?1. The presence of the bromide atom provokes the larger acceleration. While the 32CA reaction involving the CO₂Me substituted NO is highly ortho regioselective, the other two reactions are poorly ortho regioselective. A bonding evolution theory study of the more favorable ortho regiosiomeric channel associated with the 32CA reaction involving the Br substituted NO indicates that this reaction is associated to a nonconcerted two‐stage one‐step mechanism, in which the activation energy is mainly related to the initial rupture of the C? N triple bond of the NO.     

Aminophosphanes with bulky amino groups: Molecular structure,coupling constants 1J(31P, 15N) and 2J(31P, 29Si), and isotope‐induced chemical shifts 1Δ14/15N(31P)

The preferred conformation of aminophosphanes with bulky amino groups ( 1–20 ) was determined by NMR spectroscopy in solution, in two cases in the solid state ( 11,17 ) and in one case ( 11 ) by X‐ray crystallography. Trimethylsilylaminodiphenylphosphanes Ph₂PN(R)SiMe₃ (R = Bu ( 1 ), Ph ( 2 ), 2‐pyridyl ( 3 ), 2‐pyrimidyl ( 4 ), Me₃Si ( 5 )), amino(chloro)phenylphosphanes Ph(Cl)PNRR′ (R = Bz, R′ = Me ( 6 ), R = Bz, R′ = ^tBu ( 7 ), R = Et, R′ = Ph ( 8 )), amino(chloro)tert‐butylphosphanes ^tBu(Cl)PNRR′ (R = R′ = ⁱPr ( 9 ), R = Me, R′ = ^tBu ( 10 ), R = Bz, R′ = ^tBu ( 11 ), R = H, R′ = ^tBu ( 12 ), R = Et, R′ = Ph ( 13 ), R = ⁱPr, R′ = Ph ( 14 ), R = Bu, R′ = Ph ( 15 ), R = Bz, R′ = Ph ( 16 ), R = R′ = Ph ( 17 ), R = R′ = Me₃Si ( 18 )), 3‐tert‐butyl‐2‐chloro‐1,3,2‐oxazaphospholane ( 19 ), and benzyl(tert‐butyl)aminodichlorophosphane ( 20 ) were studied by ¹H, ¹³C, ¹⁵N, ²⁹Si, and ³¹P NMR spectroscopy. In all cases, the more bulky substituent at the nitrogen atom prefers the syn‐position with respect to the assumed orientation of the phosphorus lone pair of electrons. Many of the derivatives studied adopt this preferred conformation even at room temperature. Numerous signs of coupling constants ¹J(³¹P, ¹⁵N), ²J(³¹P, ¹³C), and ²J(³¹P, ²⁹Si) were determined. Low temperature NMR spectra were measured for derivatives for which rotation about the P N bond at room temperature is fast, showing the presence of two rotamers at low temperature. The respective conformation of these rotamers could be assigned by ¹³C, ¹⁵N, and ³¹P NMR spectroscopy. Isotope‐induced chemical shifts ¹Δ^15/14N(³¹P) were determined for all compounds at natural abundance of ¹⁵N by using Hahn‐echo extended polarization transfer experiments. The molecular structure of 11 in the solid state reveals pyramidal surroundings of the nitrogen atom and mutual trans‐positions of the tert‐butyl groups at phosphorus and nitrogen. © 2002 Wiley Periodicals, Inc. Heteroatom Chem 13:667–676, 2002; Published online in Wiley InterScience (www.interscience.wiley.com). DOI 10.1002/hc.10084     

SCHWEFELDIIMIDE MIT SILYL-, GERMYL-, STANNYL- UND PHOSPHINYL-HETEROSUBSTITUENTEN. SYNTHESE UND NMR-SPEKTROSKOPISCHE CHARAKTERISIERUNG

Abstract

Reactions of the salts K₂SN₂ and K[(NSN)R] (R = ′Bu, SiMe₃ and P′Bu₂) with organoelement chlorides R′R′ěl have been used to prepare four series of model sulfur diimides: R′R″E(NSN)ER″R′, ′Bu(NSN)ER″R′, Me₃Si(NSN)E″R′ and ^tBu₂P(NSN)ER″R′, respectively (E = C, Si, Ge, Sn; R′ and R″ = alkyl or aryl group). All compounds have been characterized by ′H and ¹³C NMR and—if possible—by ³¹P, ²⁹Si and ¹¹⁹Sn NMR spectroscopy. The configuration (Z or E) of the substituents R and E″R′ has been assigned in several cases using ^tBu(NSN)^tBu (1) as a reference. The E,Z assignment of ¹H, ¹³C and ¹⁵N nuclei in 1 is based on selectively ¹H-decoupled refocused INEPT ¹⁵N NMR and two-dimensional (2D) ¹³C/¹H heteronuclear shift correlations. The sulfur diimides under study are in general fluxional in solution.