New water-soluble iminecalix[4]arene with a deep hydrophobic cavity

We report the synthesis of a new water-soluble iminecalix[4]arene host 4c with a deep hydrophobic cavity. The negatively charged four carboxylate functions on the top of the cavity play a major role in the recognition of charged molecular species. The ¹H NMR titration experiments revealed that host 4c binds with cationic (10-12) and neutral guests (6-9) in water with high binding constants in the order of 10⁴-10⁵ M⁻¹. Cationic guest 9 showed highest binding constant of 2.81 × 10⁵ M⁻¹ with host 4c amongst all tested guests. Selectivity over anionic guests (13-17) is established by the presence of negative charges at the top of the deep hydrophobic cavity, as guests 15 and 17 were not recognized by host 4c. Neutral pyridine derivatives with hydrophobic chains at para positions showed high binding constants of 6.02 × 10⁴-2.23 × 10⁵ M⁻¹. The data obtained for the recognition of the guests by host 4c revealed that the ionic as well as the hydrophobic-hydrophobic interactions are crucial in the molecular recognition in aqueous medium.     

Amino acid binding in water by a new guanidiniocarbonyl pyrrole dication: the effect of the experimental conditions on complex stability and stoichiometry

The synthesis and binding properties of a new guanidiniocarbonyl pyrrole dication 2 are reported, which efficiently binds alanine carboxylate with log K_ass = 3.9 in buffered water. Due to the increased charge density in this dication, the binding constant is five times larger than for the parent guanidiniocarbonyl pyrrole monocation 1 (log K = 3.2). However, the experimental conditions for determining the binding constant significantly influence both complex stability and stoichiometry. With increasing amount of substrate added during the titration, the overall complex stability decreases due to the increasing ionic strength of the solution. Furthermore, the formation of 1:2 complexes between 2 and 7 becomes increasingly important. Therefore, for the comparison of binding data it has to be assured that exactly the same experimental conditions are used for their determination.     

Versatility of an intramolecularly hydrogen-bonded 4-(N,N-dimethylamino)benzoate group as a signaling subunit for anion recognition

The versatility of the 4-(N,N-dimethylamino)benzoate (DMAB) group embedded in host 1 as a signaling subunit for anion recognition was elucidated in terms of ¹H NMR, CD, and fluorescence studies. Host 1 showed 1:1 complexation with monovalent anions and stepwise 1:1 and 2:1 (host 1: anion) complexation with divalent phosphate anions. The binding constants between host 1 and anions were determined by means of ¹H NMR titrations in CD₃CN (HPO₄²⁻: log K_1:1=6.2, log K_2:1=4.9; H₂P₂O₇²⁻: log K_1:1=4.4, log K_2:1=1.8; AMP²⁻: log K_1:1>7, log K_2:1>5) and the affinity of host 1 toward divalent anions, HPO₄²⁻, H₂P₂O₇²⁻, and AMP²⁻, is stronger than that toward monovalent anions, NO₃⁻, BF₄⁻, ClO₄⁻, HSO₄⁻, and PF₆⁻. The CD exciton chirality studies of host 1 with divalent anions, HPO₄²⁻ and AMP²⁻, revealed that the two DMAB groups in the 2:1 complexes were arranged with negative chirality (counterclockwise). The dual fluorescence behavior of the DMAB group demonstrated not only the complexation stoichiometry but also the role(s) of the lipophilic countercation such as tetrabutylammonium and/or the hydrophilic residue in AMP during anion recognition.     

Highly selective complexation of metal ions by the self-tuning tetraazacalixpyridine macrocycles

By means of UV-vis and ¹H NMR titrations and X-ray crystallography, complexation of tetramethylazacalix[4]pyridine L1 and tetramethylazacalix[2]arene[2]pyridine L2 with metal ions was studied. While no interaction was observed with alkali and alkaline earth metal ions, both ligands have been found to act as powerful and selective macrocyclic hosts to complex a number of transition and heavy metal ions. Due to the intrinsic nature of the bridging nitrogen atoms that can adopt different electronic configurations and form varied degrees of conjugations with their adjacent pyridine rings, tetramethylazacalix[4]pyridine L1 regulated its conformation and cavity structure to best fit the guest metal ion species, yielding a 1:1 square planar L1-Mⁿ⁺ complex with binding constants log K_1:1 ranging from 2.7(1) to 8.2(8).     

Kemp's triacid attached to octa-O-methyl resorc[4]arenes: conformations in solution and comparative binding studies with various 2-amino pyridines

We synthesized the new supramolecular host molecules 7 and 13 based on functionalized resorcarenes bearing Kemp's triacid. Conformations in solution have been investigated and the influence of intra- and intermolecular hydrogen bonds from the triacid was shown by low temperature and DOSY NMR experiments. The results of host 7 are supported by DFT calculations. The binding behaviour of 7 towards different 2-amino pyridines in chloroform has been investigated by NMR titrations. The association constants reach from K=207 M⁻¹ for 2-amino-5-cyano pyridine to K=1551 M⁻¹ for 2-amino-4-methyl pyridine. The association constants of the formed complexes of 7 with 2-amino pyridines were compared with those of the simple host systems 14 and 15 in order to evaluate the influence of the attached resorcarene host.     

Synthesis and DNA cleavage properties of ternary Cu(II) complexes containing histamine and amino acids

The ternary complexes of [Cu^II(Hist)(Tyr)]⁺1 and [Cu^II(Hist)(Trp)]⁺2 have been synthesized, structurally characterized and their DNA binding and cleavage abilities probed. The intrinsic binding constants (K_b) for complexes/CT-DNA were also determined (K_b = 2.7 × 10² for complex 1 and K_b = 2.2 × 10² for complex 2). These complexes exhibit their nuclease activity on plasmid DNA, which seems to depend on the nature of the aromatic moiety. The DNA hydrolytic cleavage rate constants were also determined for complexes 1 and 2, which are 0.91 and 0.79 h⁻¹, respectively.     

Synthesis and photochemical properties of porphyrin-azobenzene triad

Porphyrin-azobenzene triad E-2, having ester spacers between the chromophores, was synthesized and its photochemical and thermal isomerization properties were investigated. Triad E-2 showed little electronic communication among the chromophores according to a comparison of the steady-state absorption and fluorescence spectra of E-2 and their model compounds. E-2 showed photochemical E-Z isomerization and subsequent thermal Z-to-E isomerization. The porphyrin chromophore in Z-2, obtained by photoisomerization, did not strongly affect the transient state of thermal Z-to-E isomerization of the azobenzene unit. The high E-isomer composition at the photostationary state indicates the occurrence of triplet energy transfer between porphyrin and azobenzene. E-2 forms a 1:1 complex with 4,4′-bipyridyl (Bipy). The stability constant for E-2 with Bipy was determined (log K = 4.20 mol⁻¹ dm³) by iterative least-squares fitting to a 1:1 binding model.     

Self-assembly and characterization of a giant metallocycle

A giant, 100-membered metallocycle 3 was prepared via coordination bond-based self-assembly from W-shaped ligand 9 and a palladium complex. Metallocycle 3 may create three topologically discrete subcavities, thus capable of binding up to three molecules of a diamide guest by hydrogen-bonding interactions. Elemental analysis, ¹H NMR, and the ESI-mass spectra, and vapor pressure osmometry (VPO) data were all consistent with the structure of 3. N,N,N′,N′-tetramethylterephthalamide G was used as a guest for the binding study, and ESI-mass spectrum clearly displayed a characteristic, intense peak at m/z 1542 (41%), attributed to the fragment [3·G₃-3CF₃SO₃]³⁺ of 1:3 (host/guest) complex. The ¹H NMR titration experiments gave association constants of 2300 ± 300 and 1200 ± 200 M⁻¹ in CDCl₃ at 25 °C for two identical outer cavities, with weak positive cooperativity (Hill coefficient h = 1.3).     

Molecular engineering. Part 9: Enhanced binding ability and selectivity of C2v cavitands

Two new C_2v cavitands with protective side chains were synthesized and their binding properties for small molecules were studied. Cavitand 7 having benzyl side chains binds ethanol most strongly with K_a = 1508 M⁻¹ at 20 °C in CDCl₃, which was driven entropically. Cavitand 8 having coumarinyl side chains showed weaker binding due to its steric hindrance. ¹H NMR spectra show that carceroisomers of ethanol or acetonitrile@cavitand 7 exist in 3:1 ratio at 20 °C. The binding tendencies of the guest molecules were increased in nonpolar solvent media.     

A novel strapped porphyrin receptor for molecular recognition

A novel strapped porphyrin receptor Zn1, in which two electron-rich bis(p-phenylene)-34-crown ether-10 units are incorporated, has been designed and synthesized from the newly developed intermediate 7 for investigating new chemistry of molecular recognition. ¹H NMR and UV-Vis studies revealed that Zn1 displays relatively weak binding abilities to neutral electron deficient naphthalene-1,8,4,5-tetracarboxydiimide (NDI) derivatives 13 (no simple complexing stoichiometry was observed), 19 (K_a=48(±5) M⁻¹) and 30 (K_a=46(±5) M⁻¹) in chloroform-d, strong binding ability to pyridine derivative 25, (K_a=1.5(±0.12)×10³ M⁻¹) in chloroform, moderately strong binding ability to tetracationic compound 35·4PF₆ (K_a=475(±50) M⁻¹) in acetone-d₆, and very strong binding affinity to compound 22 (K_a=6.5(±0.7)×10⁵ M⁻¹), which consists of one pyridine and two NDI units, in chloroform. Remarkable cooperative effect of the intermolecular metal-ligand coordination and donor-acceptor interactions in complex Zn1·22 was observed by comparing the complexing behaviors between Zn1 and the appropriately designed guests. Complex Zn1·22 possesses an unique three-dimensional tri-site binding feature. For comparison, the complexing affinity of 1 toward compounds 13, 19, and 30 in chloroform-d and 35·4PF₆ in acetone-d₆ has also been investigated and the binding patterns in different complexes were explored. The results demonstrate that strapped porphyrin derivatives are ideal precursors for constructing new generation of three-dimensional multi-site artificial receptors for molecular recognition and host-guest chemistry.     

DNA binding and cleavage behaviors of copper(II) complexes with amidino-O-methylurea and N-methylphenyl-amidino-O-methylurea,and their antibacterial activities

The two designed copper(II) complexes, [Cu(L^1m)₂]Cl₂ (1) (L^1m = amidino-O-methylurea) and [Cu(L^2m)₂]Cl₂ (2) (L^2m = N-methylphenyl-amidino-O-methylurea), have been investigated for their interaction with calf thymus DNA by utilizing the absorption titration method, viscometric studies and thermal denaturation. The cleavage reaction on pBR322 DNA has been monitored by agarose gel electrophoresis. The results suggest that the two complexes can bind to DNA by non-intercalative modes and exhibit nuclease activities in which supercoiled plasmid DNA is converted to the linear form. Complex 2, with an intrinsic binding constant (K_b) of 1.16 × 10⁵ M⁻¹, shows a higher binding efficiency and a better nuclease activity than complex 1, with a K_b value of 5.67 × 10⁴ M⁻¹. Their DNA cleavage potential can be significantly enhanced by hydrogen peroxide, indicating an oxidative cleavage process. Further examination of the antibacterial activities against Campylobacter has revealed inhibition zones of 9.0 (for 1) and 14.5 mm (for 2), which are in agreement with their minimum inhibitory concentration (MIC) values of 1.56 and 0.78 mg mL⁻¹, respectively. The substantially better reactivity of 2 results from the aromatic moieties on the side chain of the L^2m ligand which act as an additional binding site.     

Oxidative and hydrolytic DNA cleavage by Cu(II) complexes of salicylidene tyrosine schiff base and 1,10 phenanthroline/bipyridine

Ternary Cu(II) complexes [Cu(II)(saltyr)(B)] (1,2), (saltyr = salicylidene tyrosine, B = 1,10 phenanthroline (1) or 2,2′ bipyridine (2)) were synthesized and characterized by various techniques. The complexes exhibit square pyramidal (CuN₃O₂) geometry. CT-DNA binding studies revealed that the complexes show good binding propensity (K_b = 3.47 × 10⁴ M⁻¹ and 3.01 × 10⁴ M⁻¹ for 1 and 2, respectively). The role of these complexes in the oxidative and hydrolytic DNA cleavage was studied. The catalytic ability of 1 and 2 follows the order: 1 > 2. The rate constants for the hydrolysis of phosphodiester bond were determined as 2.80 h⁻¹ and 2.11 h⁻¹ for 1 and 2, respectively. It amounts to (0.58-0.77) × 10⁸ fold rate enhancement compared to non-catalyzed DNA cleavage, which is significant.     

Pyrenyl-appended imidazolium receptor for selective fluorescence sensing of oxalic acid

A new fluorescent imidazolium-based cholestane receptor 4 bearing a pyrene moiety was synthesized. The binding ability of 4 toward various dicarboxylic acids was examined by UV-vis and fluorescence spectroscopy. Receptor 4 showed the highest binding constant for oxalic acid among all the tested dicarboxylic acids (K_a = 5.06 × 10⁴ M⁻¹). Oxalic acid formed a complex with 4 with a 1:2 ratio in ethanol.     

A “sodium trap” based on benzo-15-crown-5 with an exocyclic N-(thiophosphoryl)thiourea moiety

For N-(thio)phosphorylthioureas of the common formula RC(S)NHP(X)(OiPr)₂HL^I (R = N-(4′-aminobenzo-15-crown-5), X = S), HL^II (R = N-(4′-aminobenzo-15-crown-5), X = O), HL^III (R = PhNH, X = S), HL^IV (R = PhNH, X = O), and (N,N′-bis-[C(S)NHP(S)(OiPr)₂]₂-1,10-diaza-18-crown-6) H₂L^V, salts LiL^I,III,IV, NaL^I–IV, KL^I–IVM₂L^V (M = Li⁺, Na⁺, K⁺), Ba(L^I,III,IV)₂, and BaL^V have been synthesized and investigated. Compounds NaL^I,II quantitatively drop out as a deposit in ethanol medium, allowing the separation of Na⁺ and K⁺ cations. This effect is not displayed for the other compounds. The crystal structures of HL^III and the solvate of the composition [K(Me₂CO)L^III] have been investigated by X-ray crystallography.     

Substituent effects in the ring-chain tautomerism of 1,3-diaryl-2,3-dihydro-1H-naphth[1,2-e][1,3]oxazines

Condensation of Betti base analogue amino naphthols with substituted benzaldehydes led to 1,3-diaryl-2,3-dihydro-1H-naphth[1,2-e][1,3]oxazines (3-9) which proved to be three-component (r¹-o-r²) tautomeric mixtures in CDCl₃ at 300 K. The electronic effects of the 3-aryl groups on the ratios of the ring-chain tautomeric forms at equilibrium could be described by the equation log K_X=ρσ⁺+log K_X=H. The value of the intercept was found to be strongly influenced by the steric arrangement of the 1,3-diaryl substituents.     

A combined experimental and theoretical study of metallic salts of thiapentadienyl, sulfinylpentadienyl and butadienesulfonyls

Alternative methods for the synthesis of the following acyclic salts (CH₂CHCHCHS)M [M = K, 1(K); Na, 1(Na); Li, 1(Li)], (CH₂CHCHCHSO)M [M = K, 2(K); Na, 2(Na)], (CH₂CHCHCHSO₂)M [M = K, 3(K); Na, 3(Na); Li, 3(Li)], (CH(Me)CHC(Me)CHSO₂)M [Me5-syn, M = K, 9(K); Na, 9(Na); Li, 9(Li), (CH(Me)CHCHC(Me)S)M [Me5-syn, M = K, 10(K); Na, 10(Na); Me5-anti, M = K, 11(K); Na, 11(Na)] are described, as a result of the activation of C-S bond in dihydrothiophenes by deprotonation with different bases. The effect of methyl substituents in the dihydrothiophenes is significant, which modifies considerably the choice of the base. The influence of the reaction conditions, type of solvent, base and dihydrothiophenes is analyzed. The NMR spectroscopy, including NOESY, ROESY and difference NOE establish the preferred U conformation for all derivatives, and support a delocalization of charge on the thiapentadienyl (1M) and sulfinylpentadienyl (2M) complexes. However, a conjugated diene structure is proposed on the butadienesulfonyl compounds (3M), in which the negative charge is delocalized in the SO₂ fragment and stabilized with the corresponding cations (M = K, Na and Li). In presence of traces of base, compounds 3M suffer a rearrangement, to the most stable S conformer, 13M. The stability of 3M depends on the size of the cation, the greater the size, the greater stability. Furthermore, a theoretical study shows that electronic and geometrical properties (energy conformers, charge distributions and relative stabilities) of the thiapentadienyl, sulfinylpentadienyl and butadienesulfonyl anions and their corresponding metal salts 1M-3M (M = Li, Na and K) shows to be in good agreement with the experimental findings.     

New ICT probes: synthesis and photophysical studies of N-phenylaza-15-crown-5 aryl/heteroaryl oxadiazoles under acidic condition and in the presence of selected metal ions

Molecular probes 6 and 7, incorporating N-phenylaza-15-crown-5 and aryl/heteroaryl oxadiazole have been designed to function as the new intramolecular charge transfer (ICT) probes. Photophysical properties have been studied under acidic condition as well as in the presence of selected metal ions, Ca²⁺, Ba²⁺, Mg²⁺, Na⁺, K⁺, and Li⁺. The changes in the ICT character of the probes, following the addition of trifluoroacetic acid, were interpreted in terms of site and degree of protonations. Based on the cation affinity, the ICT bands in both UV-vis and emission spectra experienced varying degrees of blue shifts due to removal of the aza-crown ether nitrogen from conjugation. The cation-induced spectral shifts and the stability constants revealed binding strength in the order Ca²⁺>Ba²⁺?Li⁺>Na⁺>K⁺>Mg²⁺. Competitive experiments performed in a matrix of ions also indicated superior interaction of 6 and 7 with Ca²⁺. The excited state decay profiles remained largely unperturbed in the presence of metal ions. The studied probes displayed positive solvatochromism and the Stokes shifts and excited state lifetimes increased with increasing solvent polarity. These findings can be rationalized by invoking highly polar nature of the emittive states. The chemoionophores 6 and 7 constitute potentially interesting Ca²⁺ sensitive probes due to their relatively high binding interaction for Ca²⁺ (log K_s=3.55-3.10) vis-a-vis that of biologically interfering Mg²⁺ (log K_s=1.67-1.30).     

Heavy analogues of the 6π-electron anionic ring systems: Cyclopentadienide ion and cyclobutadiene dianion

The heavy analogues of the anionic 6π-electron systems, lithium 1,2-disila-3-germacyclopentadienide 2⁻ · [Li⁺(thf)], 1,2-disila-3,4-digerma- and 1,2,3,4-tetrasilacyclobutadiene dianions 7²⁻ · 2[K⁺(thf)₂] and 8²⁻ · 2[K⁺(thf)₂], were synthesized by the reduction of the neutral precursors 1, 3 and 4, respectively. 2⁻ · [Li⁺(thf)], the heavy analogue of the cyclopentadienide ion, is an aromatic compound, whereas 7²⁻ · 2[K⁺(thf)₂] and 8²⁻ · 2[K⁺(thf)₂], the heavy analogues of the cyclobutadiene dianion, are both non-aromatic.     

A new heteroditopic receptor and sensor highly selective for bromide in the presence of a bound cation

The heteroditopic receptor 2 containing a crown ether and amidoferrocence groups was synthesized and the binding abilities with various anions are reported in the presence and absence of metal cations. In the presence of Na⁺, 2 showed positive co-operative binding towards Br⁻ with the binding affinity K_ass = 16,096 M⁻¹. Therefore, receptor 2 showed a switched-on binding for Br⁻ in the presence of Na⁺ and a switched-off binding in the absence of Na⁺. Compound 2 was also found to sense Cl⁻ and Br⁻ electrochemically.     

A new sulfonamide derivative as magnesium ion receptor: N-tosyl-2,6-diisopropyl-4-(2,3-dimethoxylbenzoylamide)aniline

N-Tosyl-2,6-diisopropyl-4-(2,3-dimethoxylbenzoylamide)aniline (1) has been synthesized and its metal ion (Na⁺, K⁺, Ca²⁺, Mg²⁺) coordinating properties investigated by FT-IR, ESI-MS, and ¹H NMR methods. Among the tested metal ions, the overall stability constant (log K) for Mg²⁺ (6.89) is the highest (Na⁺, 5.64; K⁺, 5.43; Ca²⁺, 5.51) in 10% water/THF at 25.0 ± 0.5 °C determined by UV-vis spectroscopy, indicating that 1 is a potent ionophore for Mg²⁺ ion.