Synthesis and crystal structure of a complex bearing interesting structural motifs: [Cu (C4H7N3) H2O (4,4′-Hbpy)]·SO4·NO3

A new complex [Cu (C₄H₇N₃) H₂O (4,4′-Hbpy)]·SO₄·NO₃ was synthesized and X-ray characterized. Elemental analysis, X-ray diffraction and infrared spectroscopy of the complex were performed. The crystal system is orthorhombic. Crystal data: Fw=498.98, spacegroup: P212121. Z=4, a=14.952(3), b=20.491(4), c=6.713 Å. V=2056.7(9) Å. λ(Mo-K)=0.71070 Å. μ=12.18 cm⁻¹, D_calc=1.66 g/cm³, F₀₀₀=1032.00, R=0.062, Rw=0.087. X-ray analysis illustrated that 4,4′-bpy is mono-protonated and that there are two kinds of anions in one molecule, which give rise to the hydrogen interaction between the molecules in the crystal. Then an extended three-dimensional network is formed along the hydrogen bonds and π–π bonds between the pyridine rings.     

X-Ray, FTIR and quantum chemical studies of short and asymmetric hydrogen bonds in bis(2,6-dimethylpyridine-N-oxide) sulphate [2,6-(CH3)2C5H3N---OH]2[SO4]

Crystals of bis(2,6-dimethylpyridine-N-oxide) sulphate are monoclinic, space group P2₁/c, a = 14.098(2) Å, b = 7.855(1) Å, c = 15.203(3) Å, β = 104.84(1)°. The crystal structure has been refined to R = 0.0373 (2052 reflections). The disordered SO²⁻₄ anion accepts hydrogen bonds from two protonated 2,6-dimethylpyridine-N-oxides and two alternative conformations of the SO²⁻₄ group are distinguished. The occupancy factor of the predominant orientation is 0.63 and the O...O distances are 2.445(2) and 2.453(4) Å; in the second form (fraction, 0.37), these distances are 2.445(2) and 2.544(9) Å.

The PM3 and AM1 methods predict three minima for the title complex, whereas the SAM1 and BLYP/6-31G methods predict only one. All methods predict that molecular complex 3 is the most stable. The SAM1 geometry is very close to that of BLYP/6-31G.

The Fourier transform IR (FTIR) spectrum shows a very intense and broad (continuum) absorption within the 1600-400 cm⁻¹ region, typical of short hydrogen bonds. There is no absorption in the 3000-2000 cm⁻¹ region expected for the longer hydrogen bond (2.544(9) Å) in the less populated orientation. Isotope and solvent effects are discussed.     

Tautomeric properties, conformations and structure of N-(2-hydroxyphenyl)-4-amino-3-penten-2-on

N-(2-hydroxyphenyl)-4-amino-3-penten-2-on (C₁₁H₁₃NO₂) has been studied by X-ray analysis. It crystallizes the orthorhombic space group P2₁2₁2₁ with a=8.834(1), b=10.508(2), c=11.212(2) Å, V=1040.8(3) Å³, Z=4, D_c=1.22 g cm⁻³ and μ(MoK)=0.084 mm⁻¹. The structure was solved by direct methods and refined to R=0.038 for 1373 reflections (I>2σ(I)). The title compound is photochromic and the molecule is not planar. Intramolecular hydrogen bonds occur between the pairs of atoms N(1) and O(1) [2.631(2) Å], and N(1) and O(2) [2.641(2) Å], the H atom essentially being bonded to the N atom. There is also a strong intermolecular O–HO hydrogen bonding [2.647(2) Å] between neighbouring molecules. Tautomeric properties and conformations of the title compound were investigated by semi-empirical quantum mechanical AM1 calculations and the results are compared with the X-ray results.     

Structural, vibrational and DSC investigations of the tetraethylammonium hydrogenselenate crystal

The X-ray structure of tetraethylammonium hydrogenselenate, [N(C₂H₅)₄]HSeO₄, was determined at room temperature. The crystal belongs to the P space group of triclinic system, Z=2, a=8.290(2), b=9.073(2), c=9.517(2) Å, =76.75(3), β=74.31(3) and γ=63.92(3)°. The hydrogenselenate anions are joined into cyclic dimers by two identical (equivalent by C_i) strong hydrogen bonds O(2)–H(02)O(1^a); the O(2)O(1^a) distance equals 2.611(5) Å. Powder IR and Raman spectra are discussed with respect to the crystal structure. The DSC reveals two phase transitions at 328 and 358 K.     

Hydrogen bonds in the crystal packings of mesalazine and mesalazine hydrochloride

The crystal structures of pharmaceutical product mesalazine (marketed also under different proprietary names as Salofalk, Asacol, Asacolitin, and Claversal) and its hydrochloride are reported. In the crystal mesalazine is in zwitterion form as 5-ammoniosalicylate (1) whereas mesalazine hydrochloride crystallizes in an ionized form as 5-ammoniosalicylium chloride (2). Compound 1 (C₇H₇O₃N) crystallizes in the monoclinic space group P2₁/n with a = 3.769(1) Å, b = 7.353(2) Å, c = 23.475(5) Å, β = 94.38(2)°, V = 648.7(8) ų, Z = 4, D_c = 1.568 g cm⁻³ and μ(MoK) = 1.2 cm⁻¹. Compound 2 (C₇H₈O₃NCl) crystallizes in the triclinic space group P with a = 4.4839(2) Å, b = 5.7936(2) Å, c = 15.6819(5) Å, = 81.329(3)°, β = 88.026(3)°, γ = 79.317(4)°, V = 395.74(3) ų, Z = 2, D_c = 1.591 g cm⁻³ and μ(CuK) = 40.8 cm⁻¹. The crystal structures were solved by direct methods and refined to R = 0.041 for 1 and 0.028 for 2, using 607 and 1374 observed reflections, respectively. The configuration of both molecules, with the ortho hydroxyl to a carboxyl group, favours the intramolecular hydrogen bonds. Very complex systems of intermolecular hydrogen bonds were observed in both crystal packings. They are discussed in terms of graph-set notation. The mesalazine crystal structure is characterized by two-dimensional network of hydrogen bonds in the ab plane. The crystal structure pattern of mesalazine hydrochloride is a three-dimensional network significantly supported by N⁺---HCl⁻ interactions.     

Crystal structure of 3-diethylaminomethyl-2,2′-biphenol

Crystals of 3-diethylaminomethyl-2,2′-biphenol were examined using X-ray diffraction and FT-IR spectroscopy. Their space group is P2₁/c with a=7.305(1), b=13.816(2), c=29.232(4) Å, β=92.411(3)° and Z=8. The unit cell contains two symmetry-independent zwitterions. The hydrogen atom of the protonated diethylaminomethyl group is linked to the negatively charged phenolate oxygen atom, which in turn is linked to the hydroxyl group by a short hydrogen bond (molecule a: NO=2.604(3), OO=2.512(3) Å; molecule b: NO=2.593(4), OO=2.489(4) Å). The OHO⁻H⁺N bifurcated intramolecular hydrogen bonds are crystallographically asymmetric. The IR spectrum of the crystals confirms very well the results obtained by the X-ray study. Instead of continuous absorption, only broad bands are found indicating relatively low proton polarisability in the two types of intramolecular hydrogen bonds.     

Structural and spectroscopic properties of Hexamethylenetetramine cobalt(II) complex: [Co(NCS)2(hmt)2(H2O)2][Co(NCS)2(H2O)4] (H2O)

Synthesis, structure, spectroscopy and thermal properties of complex [Co(NCS)₂(hmt)₂(H₂O)₂][Co(NCS)₂(H₂O)₄] (H₂O) (I), assembled by hexamethylenetetramine and octahedral Co(II) metal ions, are reported. Crystal data for I: F_w 387.34, a=9.020(8), b=12.887(9), c=7.95(1) Å, =96.73(4), β=115.36(5), γ=94.16(4)°, V=820(1) Å³, Z=2, space group=P−1, T=173 K, λ(Mo-K)=0.71070 Å, ρ_calc=1.718567 g cm⁻³, μ=17.44 cm⁻¹, R=0.088, R_w=0.148. An interesting two-dimensional network is assembled via hydrogen bonds through coordinated and free water molecules. The d–d transition energy levels of Co(II) ion are determined by UV–vis spectroscopy and calculated by ligand field theory. The calculated results agree well with experiment ones.     

Structural and spectral studies on N-(4-chloro)benzoyl-N′-(4-tolyl)thiourea

The crystal and molecular structure of the N-(4-chloro)benzoyl-N′-(4-tolyl)thiourea (C₁₅H₁₃N₂OSCl, M_r=304.79) is determined by X-ray diffraction. The crystal structure is monoclinic, space group: P2₁/n, a=16.097(6), b=4.5989(2), c=19.388(7) Å and β=89.299(6)° V=1434.7(9)ų, Z=4. FTIR and NMR spectra have been characterized. The interactions of intramolecular and intermolecular hydrogen bonds have been discussed. Density functional theory (DFT) (B3LYP) methods have been used to determine the structure and energies of stable conformers. Minimum energy conformations are calculated as a function of the torsion angle θ (C13–N1–C14–N2) varied every 30°. The optimized geometry corresponding to crystal structure is the most stable conformation. This has partly been attributed to intramolecular hydrogen bonds. With the basis sets of the 6-311G* quality, the DFT calculated bond parameters and harmonic vibrations are predicted in a very good agreement with experimental data.     

Structural features of 4,4′-diaminooctafluorobiphenyl

Molecules of C₁₂H₄F₈N₂ crystallize in the orthorhombic space group P2₁2₁2₁ with cell constants a=9.200(1), b=10.896(1), c=23.178(3) Å and V=2323.4(5) ų. There are two molecules in the asymmetric unit which have D₂ symmetry. However these two molecules have C₂ symmetry in central C–C bonds, separately. Intramolecular steric repulsions between F atoms and N–HF hydrogen bonds have very much affected the molecular conformation. The mean dihedral angle between intramolecular phenyl rings is 119.2(1)°. The N–C bonds have lengths 1.363(4)–1.407(4) Å with a mean of 1.388 Å. This is shorter than the conventional C–N (1.47(1) Å) bond length due to π-electron delocalizations (F.H. Allen, O. Kennard, D.G. Watson, L. Brammer, A.G. Orpen, R. Taylor, J. Chem. Soc. Perkin Trans. II (1987) S1–S19).

The molecular structure of the title compound was also investigated by IR spectroscopy. It was shown that the IR spectra are in agreement with the crystal structure. On the other hand, theoretical and semi-emprical molecular mechanic calculations were carried out to obtain the most probable low-energy conformations by using MM3, PM3 and AM1 programs.     

Hydrothermal synthesis, crystal structure and characterization of [Zn(H2O)4]2 [H2As6V15O42(H2O)]·2H2O

The compound [Zn(H₂O)₄]₂[H₂As₆V₁₅O₄₂(H₂O)]·2H₂O (1) has been synthesized and characterized by elemental analysis, IR, ESR, magnetic measurement, third-order nonlinear property study and single crystal X-ray diffraction analysis. The compound 1 crystallizes in trigonal space group R3, a=b=12.0601(17) Å, c=33.970(7) Å, γ=120°, V=4278.8(12) Å³, Z=3 and R1(wR2)=0.0512 (0.1171). The crystal structure is constructed from [H₂As₆V₁₅O₄₂(H₂O)]⁴⁻ anions and [Zn(H₂O)₄]²⁺ cations linked through hydrogen bonds into a network. The [H₂As₆V₁₅O₄₂(H₂O)]⁶⁻ cluster consists of 15 VO₅ square pyramids linked by three As₂O₅ handle-like units.     

Crystal structure of 1-hydroxy-1,2,3-benzotriazolium diphenyl phosphate reveals strong NHO and OHO hydrogen bonds

The structure of 1-hydroxy-1,2,3-benzotriazolium diphenyl phosphate (HOBt/DPP) has been investigated by X-ray analysis. The compound crystallizes in the monoclinic space group P2₁/n with Z = 4 and the following lattice parameters: a = 11.711(2), b = 12.727(2) and c = 12.794(3) Å, β = 105.12(2)°, V = 1840.9(6) ų. The structure was solved by direct methods and refined on F² to R values of wR2 = 0.084 and R1 = 0.034 for 1985 observed reflections. HOBt/DPP has an ionic structure with very short OHO and NHO hydrogen bonds linking the different ions. Owing to these hydrogen bonds, infinite screw-shaped chains which are twisted parallel to the y-axis are formed.     

Structural, spectral and thermal properties of a polymeric nickel(II) complex containing two-dimensional network

The structure of the complex [Ni(hmt)(NCS)₂(H₂O)₂]_n, assembled by hexamethylenetetramine (hmt) and octahedral Ni(II), is reported. Crystal data: Fw 351.07, a=9.885(10) Å, b=12.06(1) Å, c=12.505(8) Å, β=114.41(4)°, V=1357(1) ų, Z=4, space group=C2/c, T=173 K, λ(Mo−K)=0.71070 Å, ρ_calc=1.718 gcm⁻¹, μ=17.44 cm⁻¹, R=0.099, Rw=0.145. The tetrahedral assembling template effect of the hmt molecule is completed by two coordination bonds and two hydrogen interactions. The UV–vis absorption spectrum of this complex [Ni(hmt)(NCS)₂(H₂O)₂]_n with a two-dimensional network is determined in the range of 5000–35000 cm⁻¹ at room temperature. The observed spectrum is discussed and explained perfectly by the scaling radial theory proposed by us. The two-dimensional structure has no apparent effects on the d–d transitions of the central Ni(II) ion. The IR spectrum and the GT curve of the complex were also measured and clearly reflect its structural properties.     

Structure and vibrational spectra of the bis(betaine)-selenic acid molecular crystal

The crystal structure of bis(betaine)-selenic acid has been determined by X-ray diffraction as orthorhombic, space group Pbca, with a = 11.591(2), b = 22.930(5), c = 12.045(2) Å and Z = 8. The crystal comprises hydrogen selenate ions, HSeO⁻₄, and two distinct betaine molecules, which are held together into a complex by short hydrogen bonds. One of the betaine molecules is present as the zwitterion form (CH₃)₃N⁺---CH₂---COO⁻ and the second occurs as the protonated form (CH₃)₃N⁺---CH₂---COOH. Powder FTIR and Raman spectra were measured. An assignment of the observed bands to vibrations of the hydrogen bonds and internal vibrations of the hydrogen selenate ion and the betaine molecules is proposed.     

Preparation and structure of a ruthenium dicarbonyl derivative of the P2N4S2 ring

The reaction of Ru(CO)₄(C₂H₄) or Ru(CO)₅ with 1,5-Ph₄P₂N₄S₂ in CH₂Cl₂/hexane at 23°C produces the dimer [Ru(CO)₂(Ph₄ P₂N₄S₂)]₂ (2), which was shown by X-ray crystallography to have a centrosymmetric structure in which the P₂N₄S₂ ring is attached to one ruthenium atom through two (geminal) nitrogen atoms and the remote sulfur atom and serves as a bridge to the other ruthenium atom via the second sulfur atom. Crystals of 2 ·2(CH₂Cl₂) are triclinic, space group P (No. 2), a = 12.901(1) Å, b = 13.072(1) Å, c = 10.123(1) Å, = 100.88(1)°, β = 98.90(1)°, γ = 67.50(1)°, V = 1542.4(3) Å, Z = 1 with final R and R_w values of 0.040 and 0.027, respectively.     

Equilibrium diagram of KPO3–Y(PO3)3 system, chemical preparation and characterization of KY(PO3)4

Microdifferential thermal analysis (μ-DTA), X-ray diffraction (XRD) and infrared (IR) spectroscopy were used for the first time to investigate the liquidus and solidus relations in the KPO₃–Y(PO₃)₃ system. The only compound observed within the system was KY(PO₃)₄ melting incongruently at 1033 K. An eutectic appears at 13.5 mol% Y(PO₃)₃ at 935 K, the peritectic occurs at 1033 K and the phase transition for potassium polyphosphate KPO₃ was observed at 725 K. Three monoclinic allotropic phases of the single crystals were obtained. KY(PO₃)₄ polyphosphate has the P2₁ space group with lattice parameters: a=7.183(4) Å, b=8.351(6) Å, c=7.983(3) Å, β=91.75(3)° and Z=2 is isostructural with KNd(PO₃)₄. The second allotropic form of KY(PO₃)₄ belongs to the P2₁/n space group with lattice parameters: a=10.835(3) Å, b=9.003(2) Å, c=10.314(1) Å, β=106.09(7)° and Z=4 and is isostructural with TlNd(PO₃)₄. The IR absorption spectra of the two forms show a chain polyphosphates structure. The last modification of KYP₄O₁₂ crystallizes in the C2/c space group with lattice parameters: a=7.825(3) Å, b=12.537(4) Å, c=10.584(2) Å, β=110.22(7)° and Z=4 is isostructural with RbNdP₄O₁₂ and contains cyclic anions. The methods of chemical preparations, the determination of crystallographic data and IR spectra for these compounds are reported.     

Tautomeric properties, conformations and structure of N-(2-hydroxy-5-chlorophenyl) salicylaldimine

The crystal structure of N-(2-hydroxy-5-chlorophenyl) salicylaldimine (C₁₃H₁₀NO₂Cl) was determined by X-ray analysis. It crystallizes orthorhombic space group P2₁2₁2₁ with a=12.967(2) Å, b=14.438(3) Å, c=6.231(3) Å, V=1166.5(6) Å³, Z=4, D_c=1.41 g cm⁻³ and μ(MoK)=0.315 mm⁻¹. The title compound is thermochromic and the molecule is nearly planar. Both tautomeric forms (keto and enol forms in 68(3) and 32(3)%, respectively) are present in the solid state. The molecules contain strong intramolecular hydrogen bonds, N1–H1O1/O2 (2.515(1) and 2.581(2) Å) for the keto form and O1–H01N1 for the enol one. There is also strong intermolecular O2–HO1 hydrogen bonding (2.599(2) Å) between neighbouring molecules. Minimum energy conformations AM1 were calculated as a function of the three torsion angles, θ₁(N1–C7–C6–C5), θ₂(C8–N1–C7–C6) and θ₃(C9–C8–N1–C7), varied every 10°. Although the molecule is nearly planar, the AM1 optimized geometry of the title compound is not planar. The non-planar conformation of the title compound corresponding to the optimized X-ray structure is the most stable conformation in all calculations.     

Synthesis and crystal structure of two novel nickel (imidazole) complexes having hydrogen-bonded networks

Two nickel (imidazole) complexes, Ni(im)₆Cl₂·4H₂O (1) and Ni(im)₆(NO₃)₂ (2) (im=imidazole) have been synthesized and characterized by elemental analysis, IR, UV, TG and single crystal X-ray diffraction. 1 crystallizes in the triclinic space group P-1 with a=8.800(6) Å, b=9.081(6) Å, c=10.565(7) Å, =75.058(9)°, β=83.143(8)°, γ=61.722(8)°, V=718.3(8) Å³, Z=1 and R₁ (wR₂)=0.0469 (0.1497). 2 crystallizes in the trigonal space group R-3 with a=12.370(6) Å, b=12.370(6) Å, c=14.782(14) Å, =90.00°, β=90.00°, γ=120.00°, V=1959(2) Å³, Z=3 and R₁ (wR₂)=0.0358 (0.0955). 1 and 2 exhibit different supramolecular network due to their different counter anions and different hydrogen bonding connection. In compound 1, [Ni(im)₆]²⁺ cation and counter anions Cl⁻ alternatively array in an ABAB fashion via N–HCl hydrogen bonding. In compound 2, the plane of each NO₃²⁻ is almost parallel and each NO₃²⁻ connect three different [Ni(im)₆]²⁺ cations via N–HO hydrogen bonding.     

Syntheses and crystal structures of 1,2:5,6:9,10:13,14:17,18:21,22-hexabenzo-3,7,11,15,19,23-hexadehydro[24]annulene (HBC), 1,2:5,6:9,10:13,14-tetrabenzo-3,7,11,15-tetradehydro[16]annulene (QBC) and a tetracobalt complex of QBC. The first example of a transition metal complex of QBC

1,2:5,6:9,10:13,14-Tetrabenzo-3,7,11,15-tetradehydro[16]annulene, or tetrabenzocyclyne (QBC) and 1,2:5,6:9,10:13,14:17,18:21,22-hexabenzo-3,7,11,15,19,23-hexadehydro[24]annulene (HBC) have been structurally characterized by X-ray. crystallography. QBC crystallizes in two different space groups; P2₁/c with a = 10.652(3) Å, b = 10.624(2) Å, c = 19.549(4) Å, β = 93.83(2)°, V = 2207.4(8) ų, and Z = 4 and P4₁2₁2 with a = 9.330(1) Å, c = 25.497(8) Å, V = 2219.6(12) Å, and Z = 4. HBC crystallizes in monoclinic P2₁/n with a = 14.763(3) Å, b = 10.296(2) Å, c = 22.057(4) Å, β = 108.61(3), V = 3177.4(11) ų, T = 133 K, and Z = 4. Reaction of QBC with dicobaltoctacarbonyl has produced a tetracobalt complex which has been characterized by X-ray crystallography. This complex crystallizes in monoclinic P2₁/c with a = 14.699(3) Å, b = 17.188(3) Å, c = 17.254(3) Å, β = 112.63(3)°, V = 4023.5(13) ų, and Z = 4. Only two of the four C---C triple bonds of QBC bind to dicobalthexacarbonyl moieties even when excess dicobaltoctacarbonyl is used.     

Cation–anion interactions in triphenyl telluronium salts. The crystal structures of (Ph3Te)2[MCl6] (M=Pt, Ir), (Ph3Te)[AuCl4], and (Ph3Te)(NO3)·HNO3

Triphenyltelluronium hexachloroplatinate (1), hexachloroiridate (2), tetrachloroaurate (3), and tetrachloroplatinate (4) were prepared from Ph₃TeCl and potassium salts of the corresponding anions. Upon recrystallization of 4 from concentrated nitric acid, K₂[PtCl₆] and (Ph₃Te)(NO₃)·HNO₃ (5) were obtained. The crystal structures of 1–3 and 5 are reported. Compounds 1 and 2 are isostructural. They are triclinic, P , Z=2 (the asymmetric unit contains two formula units). Compound 1: a=10.7535(2), b=17.2060(1), c=21.4700(3) Å, =78.9731(7), β=77.8650(4), γ=78.8369(4)°. Compound 2: a=10.7484(2), b=17.1955(2), c=21.4744(2) Å, =78.834(1), β=77.649(1), γ=78.781(1)°. Compound 3 is monoclinic, P2₁/c, Z=4, a=8.432(2), b=14.037(3), c=17.306(3) Å, β=93.70(3)°. Compound 5 is monoclinic. P2₁/n, Z=4, a=9.572(2), b=14.050(3), c=13.556(3) Å, β=90.76(3)°. The primary bonding in the Ph₃Te⁺ cation in each salt is a trigonal AX₃E pyramid with Te---C bond lengths in the range 2.095(8)–2.14(2) Å and the bond angles 94.1(6)–100.9(5)°. The weak TeCl (1–3) and TeO (5) secondary interactions expand the coordination sphere. In 1 and 2 the cation shows a trigonal bipyramidal AX₃YE coordination with one primary Te---C bond and the shortest secondary TeCl contact in axial positions and the two other Te---C bonds and the lone-pair in equatorial positions. The cation in 3 shows a distorted octahedral AX₃Y₃E environment and that in 5 is a more complex AX₃Y₃Y′₂ arrangement. In both latter salts the structure is a complicated three-dimensional network of cations and anions.     

Structure cristalline et conformation en solution aqueuse de la carnosine (β-alanyl-L-histidine)

Carnosine (β-alanyl-L-histidine) is a biologically active molecule involved in muscular metabolism. It crystallises in the C; space group with a = 24.725 Å b = 5,427 Å c = 8,004 Å β = 100,2° (Z = 4)

In the crystal, acid and basic groups are engaged in hydrogen bonds whose strength is evaluated through IR frequencies. Molecular conformation in the solid state is defined by τ₁ = /t-177° τ₂ = −38° φ = −96° ψ = +131° χ₁ = 181° χ₂₁ = 62°

NMR study of carnosine in aqueous solution indicates that rotation about CH₂-CH₂ is free and that the other angles take the following values: Ø −150° or −90° and X₁ = 165° or 315°. Infrared and Raman spectra suggest that τ₂ undergoes small changes when going from crystal to solution while ψ is close to +150°.