<Superscript>1</Superscript>H NMR spectra of water contained in solutions of poly(<Emphasis Type="Italic">N</Emphasis>-vinylpyrrolidone) and its modification products in CDCl<Subscript>3</Subscript>

¹H NMR spectra in CDCl₃ of poly(N-vinylpyrrolidone), epoxidized poly(N-vinyl-pyrrolidone), and products derived from the latter by modification with amino acids (glycine, β-alanine, γ-aminobutyric acid, and ε-aminocaproic acid) were examined. The ¹H NMR spectra of the modified polymers contain signals for water protons due to different centers of water sorption. These signals differ in chemical shift and integral intensity and indicate a changed spatial packing of the polymer as the result of its modification. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 10, pp. 2377–2380, October, 2005.     

Comparison of enantioseparation of amino acid derivatives in aqueous and mixed aqueous-organic media by capillary zone electrophoresis

The chiral separation of dansyl-amino acids has been performed by capillary zone electrophoresis using ?β-cyclodextrin as a chiral selector, urea as an additive and 2-propanol and methanol as organic modifiers. The enantiomeric separations of dansyl-amino acids were investigated in aqueous medium and compared with the separation in mixed aqueous-organic medium as background electrolytes. The separation conditions, (concentration of buffer, β-cyclodextrin, methanol, urea and the pH value of buffer) were optimized. In the absence of organic modifier, only five pairs of 8 separated dansyl-amino acids were resolved when run separately. A mixture of up to eight chiral amino acids can be baseline resolved in less than 19 min by β-cyclodextrin-modified capillary zone electrophoresis with a buffer of 60 mmol L^–1 H₃BO₃-KCl/40 mmol L^–1 NaOH (pH 9.0), 4 mol L^–1 urea, 100 mmol L^–1β-cyclodextrin and 10% (v/v) methanol. Received: 15 March 1999 / Revised: 10 May 1999 / Accepted: 12 May 1999     

Morphology and efficiency of poly(styrene-co-divinylbenzene)-based monolithic capillary columns for the separation of small and large molecules

The morphology of organic monolithic stationary phases based on poly(styrene-divinylbenzene) was modified by changing the ratio of monomers to microporogen in order to make them also suitable for small molecule separations. The morphology of the columns was characterized by high-resolution scanning electron micrography, showing larger primary globules and larger macropores, as well as no mesopores >20 nm in the monolithic skeleton. The permeability of the modified monoliths was approximately three times higher than that of columns which have been optimized for large molecule separations, enabling operation of a 30 cm long column at pressures below 250 bar. In the isocratic separation of dansylated amino acids, plate counts of 50000–107000 m⁻¹ were achievable, which are equivalent to efficiencies obtained with 3.1 μm porous particles. The separation performance for small molecules in gradient elution was investigated using mixtures of dansylated amino acids, β-lactam antibiotics, and thyroid hormones. Finally, the modified monolithic capillary columns also proved to be highly efficient in the separation of biopolymers such as peptides and proteins, enabling peak width at half height of 3–8 s and peak capacities of 110–180 in 15–30 min gradient runs.     

Study of disulfide reduction and alkyl chloroformate derivatization of plasma sulfur amino acids using gas chromatography-mass spectrometry

Four disulfide-reducing agents, dithiothreitol (DTT), 2,3-dimercaptopropanesulfonate (DMPS), and the newly tested 2-mercaptoethanesulfonate (MESNA) and Tris(hydroxypropyl)phosphine (THP), were investigated in detail for release of sulfur amino acids in human plasma. After protein precipitation with trichloroacetic acid (TCA), the plasma supernatant was treated with methyl, ethyl, or propyl chloroformate via the well-proven derivatization–extraction technique and the products were subjected to gas chromatographic–mass spectrometric (GC–MS) analysis. All the tested agents proved to be rapid and effective reducing agents for the assay of plasma thiols. When compared with DTT, the novel reducing agents DMPS, MESNA, and THP provided much cleaner extracts and improved analytical performance. Quantification of homocysteine, cysteine, and methionine was performed using their deuterated analogues, whereas other analytes were quantified by means of 4-chlorophenylalanine. Precise and reliable assay of all examined analytes was achieved, irrespective of the chloroformate reagent used. Average relative standard deviations at each analyte level were ≤6%, quantification limits were 0.1–0.2 μmol L⁻¹, recoveries were 94–121%, and linearity was over three orders of magnitude (r ² equal to 0.997–0.998). Validation performed with the THP agent and propyl chloroformate derivatization demonstrated the robustness and reliability of this simple sample-preparation methodology.     

Synthesis and Characterization of Silica Gel Particles Functionalized with Bioactive Materials

Bioactive materials (having an amino acid, Ac-Tryptophan, A or a peptide, Ac-Trp-Ala-Ala, B) were anchored onto silica particles. A photoactive linker (N,N′-bis(2-phosphonoethyl)-1,4,5,8-naphthalenediimide (DPN)) was initially attached to the particles and next the amino acids were bound by using both Zr/P chemistry and 1,3-diisopropylcarbodiimide/1-hydroxybenzotriazole coupling. In A derivative extensive complexation of Trp with DPN was observed. Photolysis studies showed the presence of excited state reactions on the silica particles, moreover the radical species (DPN^.−, TrpH^.+, Trp^.) remained alive ∼100 times longer on the particle surface than in solution. These studies show that the formation rate of these radicals is a function of the supramolecular structures of the peptide and of the amino acid derivative on the silica particle. This paper was presented in the 5th Brazilian Meeting on Adsorption, held at Natal, Brazil, 18–21 July, 2004.     

Pyridoxal-5′-phosphate-dependent catalytic antibodies

Cofactors—i.e., metal ions and coenzymes—extend the catalytic scope of enzymes and might have been among the first biological catalysts. They may be expected to efficiently extend the catalytic potential of antibodies. Monoclonal antibodies (MAbs) against N^α-phosphopyridoxyl-l-lysine were screened for 1) binding of 5′-phosphopyridoxyl amino acids, 2) binding of the planar Schiff base of pyridoxal-5′-phosphate (PLP) and amino acids, the first intermediate of all PLP-dependent reactions, and 3), catalysis of the PLP-dependent α, β-elimination reaction with β-chloro-D/L-alanine. Antibody 15A9 fulfilled all criteria and was also found to catalyze the cofactor-dependent transamination reaction of hydrophobic D-amino acids and oxo acids (k′ _cat=0.42 min⁻¹ with D-alanine at 25°C). No other reactions with either D- or L-amino acids were detected. PLP markedly contributes to catalytic effecacy—it is a 10⁴ times more efficient acceptor of the amino group than pyruvate. The antibody ensures reaction specificity, stereospecificity, and substrate specificity, and further accelerates the transamination reaction (k′ _cat(Ab)/k′ _cat(PLP)=5×10³). The successive screening steps simulate the selection criteria that might have been operative in the evolution of protein-assisted psyridoxal catalysis.     

Resonance light-scattering method for the determination of BSA and HSA with sodium dodecyl benzene sulfonate or sodium lauryl sulfate

A new resonance light-scattering (RLS) assay of proteins such as bovine serum albumin (BSA) and human serum albumin (HSA) is presented. In the medium of phosphoric acid (pH=2.6), the weak RLS of sodium dodecyl benzene sulfonate (SDBS) or sodium lauryl sulfate (SLS) can be greatly enhanced by proteins, owing to interaction between the protein and the anionic surfactant and formation of an associate. The RLS intensity of the SDBS–protein system is stronger than that of the SLS–protein system under same experimental conditions. It is considered that the synergistic resonance caused by the absorption of both protein and SDBS could produce strong RLS, while absorption of protein only in the SLS system could cause relatively weak RLS. The enhanced intensity of RLS is proportional to the concentration of the protein. If SDBS is used as the probe the linear range is 7.5×10^–9–1.5×10^–5 g mL^–1 for BSA and 1.0×10^–8–1.0×10^–5 g mL^–1 for HSA. The detection limits are 1.8 and 2.8 ng mL^–1, respectively. When SLS is used as the probe the linear range is 2.0×10^–8–1.0×10^–5 g mL^–1 and 2.5×10^–8–1.0×10^–5 g mL^–1 for BSA and HSA, respectively, and the detection limits are 12.8 and 21.6 ng mL^–1, respectively. The biological mimics samples are synthetic concoctions of BSA and HSA with some interferents. In these samples, the concentration of interferents is higher than the concentration normally existing in organisms. The samples were determined satisfactorily.     

Orientation of water molecules by the diamond surface

The properties of water in suspensions of diamond powders with particle sizes from 125–160 μm to 2–10 nm were studied. The dielectric constant of water in these suspensions changed from 1.3 × 10³ to 2.6 × 10⁶. The particle sizes correlated with the dielectric constants. The sound velocity of “diamond” water exceeded the initial velocity by 15–20 m/s. The crystals isolated from “diamond” water after prolonged storage had specific diffraction patterns and IR spectra. Their composition was not determined.     

Electroless Ni–P coated on graphite as catalyst for the electro-oxidation of dextrose in alkali solution

Graphite particles were coated with Ni–P by electroless deposition using a conventional bath consisting of a nickel salt and hypophosphite. After 15 min of electroless deposition, the graphite particles were covered with 10 wt% nickel and 0.7–1.0 wt% phosphorus as analysed by wet chemical method. Surface morphology was studied by scanning electron microscopy (SEM). Electrochemical characterisation for the catalytic activity was done by cyclic voltammetry. Pure Ni powder and electroless Ni–P coated on graphite were used as catalysts for the electro-oxidation of dextrose (1.8 × 10⁻³ to 4.5 × 10⁻³ M) in 0.1 M KOH solution. Comparative studies revealed that electroless Ni–P coated on graphite particles acted as a better catalyst than pure Ni powder for catalytic reaction.     

Thermodynamics of the Interaction of a Homologous Series of Amino Acids with Sorbitol

The apparent molar volumes V _2,φ , apparent molar isentropic compressibilities K _S,2,φ , and enthalpies of dilution of aqueous glycine, alanine, α-amino butyric acid, valine, and leucine have been determined in aqueous 1.0 and 2.0 mol⋅dm⁻³ sorbitol solutions at 298.15 K. These data have been used to calculate the infinite dilution standard partial molar volumes V_2,m⁰V_{2,m}^{0}, partial molar isentropic compressibilities K_S,2,m⁰K_{S,2,m}^{0}, and enthalpies of dilution Δ_dil H ⁰ of the amino acids in aqueous sorbitol, along with the standard partial molar quantities of transfer of the amino acids from water to aqueous sorbitol. The linear correlation of V_2,m⁰V_{2,m}^{0} for this homologous series of amino acids has been utilized to calculate the contribution to V₂⁰V_{2}^{0} of the charged end groups (NH₃⁺\mathrm{NH}_{3}^{+}, COO⁻), the CH₂ group, and other alkyl chains of the amino acids. The results for the standard partial molar volumes of transfer, compressibilites and enthalpies of dilution from water to aqueous sorbitol solutions have been correlated and interpreted in terms of ion–polar, ion–hydrophobic, and hydrophobic–hydrophobic group interactions. A comparison of these thermodynamic properties of transfer suggest that an enhancement of the hydrophilic/polar group interactions is operating in ternary systems of amino acid, sorbitol, and water.     

Determination of 13C isotopic enrichment of valine and threonine by GC-C-IRMS after formation of the N(O,S)-ethoxycarbonyl ethyl ester derivatives of the amino acids

We describe a new method of assessing, in a single run, ¹³C isotopic enrichment of both Val and Thr by gas chromatography–combustion–isotope-ratio mass spectrometry (GC–C–IRMS). This method characterised by a rapid one-step derivatisation procedure performed at room temperature to form the N(O,S)-ethoxycarbonyl ethyl ester derivatives, and a polar column for GC. The suitability of this method for Val and Thr in in-vivo samples (mucosal hydrolysate) was demonstrated by studying protein metabolism with two tracers (¹³C-valine or ¹³C-threonine). The intra-day and inter-day repeatability were both assessed either with standards or with in-vivo samples at natural abundance and at low ¹³C isotopic enrichment. For inter-day repeatability CVs were between 0.8 and 1.5% at natural abundance and lower than 5.5% at 0.112 and 0.190 atom% enrichment for Val and Thr, respectively. Overall isotopic precision was studied for eleven standard amino acid derivatives (those of Val, Ala, Leu, Iso, Gly, Pro, Asp, Thr, Ser, Met, and Phe) and was assessed at 0.32‰. The ¹³C isotopic measurement was then extended to the other amino acids (Ala, Val, Leu, Iso, Gly, Pro, Thr, and Phe) at natural abundance for in-vivo samples. The isotopic precision was better than 0.002 atom% per amino acid (for n = 4 rats). This analytical method was finally applied to an animal study to measure Thr utilization in protein synthesis.     

Conformational analysis of the ΜΒΡ<Subscript>83–99</Subscript> (Phe<Superscript>91</Superscript>) and ΜΒΡ<Subscript>83–99</Subscript> (Tyr<Superscript>91</Superscript>) peptide analogues and study of their interactions with the HLA-DR2 and human TCR receptors by using Molecular Dynamics

The two new synthetic analogues of the MBP_83–99 epitope substituted at Lys⁹¹ (primary TCR contact) with Phe [MBP_83–99 (Phe⁹¹)] or Tyr [MBP_83–99 (Tyr⁹¹)], have been structurally elucidated using 1D and 2D high resolution NMR studies. The conformational analysis of the two altered peptide ligands (APLs) has been performed and showed that they adopt a linear and extended conformation which is in agreement with the structural requirements of the peptides that interact with the HLA-DR2 and TCR receptors. In addition, Molecular Dynamics (MD) simulations of the two analogues in complex with HLA-DR2 (DRA, DRB1*1501) and TCR were performed. Similarities and differences of the binding motif of the two analogues were observed which provide a possible explanation of their biological activity. Their differences in the binding mode in comparison with the MBP_83–99 epitope may also explain their antagonistic versus agonistic activity. The obtained results clearly indicate that substitutions in crucial amino acids (TCR contacts) in combination with the specific conformational characteristics of the MBP_83–99 immunodominant epitope lead to an alteration of their biological activity. These results make the rational drug design intriguing since the biological activity is very sensitive to the substitution and conformation of the mutated MBP epitopes.     

Anode oxidation of copper in alkali media in the presence of glycine, α-alanine,and asparagine acid

The effect of glycine, α-alanine, and asparagine acid on the kinetics of anode processes occurring for copper in alkali electrolytes is studied. The experiments are performed in a background solution of 1 × 10⁻² M NaOH (pH 12). The concentrations of glycine and α-alanine are varied in the range of 1 × 10⁻⁶-1 × 10⁻¹ M, and the concentration of asparagine acid is varied in the range of 1 × 10⁻⁵-1 × 10⁻³ M. All amino acids used in this work have been found to stimulate anode oxidation of passivated copper, initiating local activation (LA) of the metal. Depending on the nature of amino acids, this effect occurs in various concentration ranges: for glycine and α-alanine, it takes place at c= 5 × 10⁻³-2 × 10⁻² M, while for asparagine acid, at c = 1 × 10⁻⁵−1 × 10⁻³ M. In addition to this general regularity, several individual peculiarities have been revealed: in the systems containing a monobasic amino acid additive, local activation occurs at E = 0.10–0.20 V, while in the presence of a dibasic amino acid, the local activation is observed at two potentials, E _LA¹ = 0.20–0.30 V and = E _LA² = 0.80–0.90 V, separated by the repassivation region.     

Direct chiral determination of free amino acid enantiomers by two-dimensional liquid chromatography: application to control transformations in E-beam irradiated foodstuffs

Changes in free amino acids content and its potential racemization in ready-to-eat foods treated with E-beam irradiation between 1 and 8 kGy for sanitation purposes were studied. A simple heart cut two-dimensional high performance liquid chromatographic method (LC–LC) for the simultaneous enantiomeric determination of three pairs of amino acids used as markers (tyrosine, phenylalanine, and tryptophan) is presented. The proposed method involves the use of two chromatographs in an LC–LC achiral–chiral coupling. Amino acids and their decomposition products were firstly separated in a primary column (C₁₈) using a mixture of ammonium acetate buffer (20 mM, pH 6) (94%) and methanol (6%) as the mobile phase. Then, a portion of each peak was transferred by heart cutting through a switching valve to a teicoplanin-chiral column. Methanol (90%)/water (10%) was used as the mobile phase. Ultraviolet detection was at 260 nm. Detection limits were between 0.16 and 3 mg L⁻¹ for each enantiomer. Recoveries were in the range 79–98%. The LC–LC method combined with the proposed sample extraction procedure is suitable for complex samples; it involves an online cleanup, and it prevents degradation of protein, racemization of L-enantiomers, and degradation of tryptophan. Under these conditions, D-amino acids were not found in any of the analyzed samples at detection levels of the proposed method.     

Volumetric Properties of Amino Acids in Aqueous N-methylacetamide Solutions at 298.15 K

The apparent molar volumes (V _φ ) of glycine, L-alanine and L-serine in aqueous 0 to 4 mol⋅kg⁻¹ N-methylacetamide (NMA) solutions have been obtained by density measurement at 298.15 K. The standard partial molar volumes (V_f⁰)V_{\phi}^{0}) and standard partial molar volumes of transfer (D_trV_f⁰)\Delta_{\mathrm{tr}}V_{\phi}^{0}) have been determined for these amino acids. It has been show that hydrophilic-hydrophilic interactions between the charged groups of the amino acids and the –CONH– group of NMA predominate for glycine and L-serine, but for L-alanine the interactions between its side group (–CH₃) and NMA predominate. The –CH₃ group of L-alanine has much more influence on the value of D_trV_f⁰\Delta_{\mathrm{tr}}V_{\phi}^{0} than that of the –OH group of L-serine. The results have been interpreted in terms of a co-sphere overlap model.     

Influence of dry density on HTO diffusion in GMZ bentonite

With the low permeability and high swelling property, Gaomiaozi (GMZ) bentonite is regarded as the favorable candidate backfilling material for a potential repository. The diffusion behaviors of HTO in GMZ bentonite were studied to obtain effective diffusion coefficient (D _e) and accessible porosity (ε) by through- and out-diffusion experiments. A computer code named Fitting for diffusion coefficient (FDP) was used for the experimental data processing and theoretical modeling. The D _e and ε values were (5.2–11.2) × 10⁻¹¹ m²/s and 0.35–0.50 at dry density from 1,800 to 2,000 kg/m³, respectively. The D _e values at 1,800 kg/m³ was a little higher than that of at 2,000 kg/m³, whereas the D _e value at 1,600 kg/m³ was significantly higher (approximately twice) than that of at 1,800 and 2,000 kg/m³. It may be explained that the diffusion of HTO mainly occurred in the interlayer space for the highly compacted clay (dry density exceeding 1,300 kg/m³). 1,800 and 2,000 kg/m³ probably had similar interlayer space, whereas 1,600 kg/m³ had more. Both D _e and ε values decreased with increasing dry density. For compacted bentonite, the relationship of D _e and ε could be described by Archie’s law with exponent n = 4.5 ± 1.0.     

1,3,5,7-Tetramethyl-8-(<Emphasis Type="Italic">N</Emphasis>-hydroxysuccinimidyl butyric ester)difluoroboradiaza-<Emphasis Type="Italic">s</Emphasis>-indacene as a new fluorescent labeling reagent for HPLC determination of amino acid neurotransmitters in the cerebral cortex of mice

1,3,5,7-Tetramethyl-8-(N-hydroxysuccinimidyl butyric ester)difluoroboradiaza-s-indacene (TMBB-Su), a new BODIPY-based fluorescent probe, was designed and synthesized for the labeling of amino compounds. It was used as a pre-column derivatizing reagent for determination of amino acid neurotransmitters by high-performance liquid chromatography (HPLC). The fluorescence quantum yield in acetonitrile increased from 0.84 to 0.95 when it reacted with amino acid neurotransmitters. Derivatization of TMBB-Su with seven amino acid neurotransmitters was completed within 30 min at 25 °C in 24.0 mmol L⁻¹ pH 7.8 boric acid buffer. The separation was performed on a C₁₈ column with methanol–water–buffer 55:35:10 (v/v) as mobile phase (buffer: 0.10 mol L⁻¹ H₃Cit–0.10 mol L⁻¹ NaOH). Interference from the other concomitant amino acids was eliminated successfully by means of pH gradient elution. With fluorescence detection at 494 and 504 nm for excitation and emission, respectively, the limits of detection (signal-to-noise ratio = 3) were from 2.1 to 12.0 nmol L⁻¹. The proposed method has been used to determine amino acid neurotransmitters in the cerebral cortex of mice with cerebral ischemia at the convalescence stage with satisfactory recoveries varying from 94.9 to 105.2%.     

Polyamidoimides with side chromophoric groups

A new method was elaborated for the introduction of chromophores into the side chains of polymers by esterification of polyamidoimides containing side carboxy groups with glycidyl ethers of dyes, 4-(4-nitrophenylazo)phenol and 4-(6-nitrobenzothiazol-2-ylazo)phenol. The optimum modification conditions were found that made it possible to esterify 15, 30, 50, and 90% of the carboxy groups. The synthesized polymers possess valuable physicomechanical properties (E = 2.8–3.3 GPa, σ_u = 69–90 MPa, ε_u = 38–77%) and glass transition temperatures of 115–125 °C, depending on the degree of esterification. After chromophore orientation in the corona discharge, all the polymers demonstrate nonlinear optical properties of the second order. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 6, pp. 1438–1444, June, 2005.     

Probing of ascorbic acid by CdS/dendrimer nanocomposites: a spectroscopic investigation

The gamma irradiation method has provided a route for synthesis of highly water-soluble, good-quality luminescent CdS/dendrimer nanocomposites with amino- or carboxyl-terminated PAMAM dendrimer. An attempt has been made to probe ascorbic acid with the as-synthesized CdS/dendrimer nanocomposites (DNC). Ascorbic acid (AA) is an important biological antioxidant and marker for different diseases in clinical chemistry as well as in quality control in the food industry. Micromolar concentrations of AA significantly quenched the photoluminescence (PL) of both amino (–NH₂) and carboxylic (–COOH) functionalized semiconductor nanocomposites. The quenching followed a linear Stern–Volmer equation and time-resolved photoluminescence spectroscopy confirmed its static nature. A strong size dependence of the quenching pattern was observed. The binding constants, and the corresponding thermodynamic parameters ΔG ^θ, ΔH ^θ, ΔS ^θ at different temperatures were calculated. CdS DNC showed selectivity towards ascorbic acid even in the presence of possible interfering molecules, such as uric acid, tartaric acid and citric acid. Nanocomposites-based assay techniques could override the complications involved in multitudes of assay procedures, providing a simple and fast new strategy for the quantification of Ascorbic acid in the range of 16.6 to 100 μM (R = 0.998, n = 9). The proposed method was applied to the detection of ascorbic acid in Vitamin C tablets with satisfactory results.     

Application of co-electroosmotic capillary electrophoresis for the determination of inorganic anions and carboxylic acids in soil and plant extract with direct UV detection

Summary Indirect UV detection in capillary zone electrophoresis (CZE) is frequently used for the determination of inorganic anions and carboxylic acids. However, there are few reports on direct UV detection of these solutes in real samples. This paper describes the use of direct UV detection of inorganic anions and organic acids in environmental samples using co-electroosmotic capillary zone electrophoresis (co-CZE) at 185 nm. The best separation and detection of the solutes was achieved using a fused silica capillary with an electrolyte containing 25 mM phosphate, 0.5 mM tetradecyltrimethylammonium bromide (TTAB) and 15% acetonitrile (v/v) at pH 6.0. Four common inorganic anions (Cl⁻, NO₂ ⁻, NO₃ ⁻ and SO₄ ²⁻) and 11 organic acids (oxalic, formic, fumaric, tartaric, malonic, malic, citric, succinic, maleic, acetic, and lactic acid), were determined simultaneously in 15 min. Linear calibration plots for the test solutes were obtained in the range 0.02–0.5 mM with detection limits ranging from 1–9 μM depending on the analyte. The proposed method was successfully used to determine inorganic anions and carboxylic acids in soil and plant tissue extracts with direct injection of the sample.