Systematic study of the effects of experimental parameters on the beam-induced dehalogenation of chlorpromazine in liquid secondary ion mass spectrometry

The effect of experimental parameters such as time of irradiation, analyte concentration, primary beam density, matrix selection and matrix additives on the beam-induced dehalogenation of chlorpromazine in liquid secondary ion mass spectrometry (LSIMS) was investigated. It was found that dehalogenation of chlorpromazine in glycerol increased with increasing time of irradiation, analyte concentration and primary beam density. These results were compared with those obtained using 4-chlorophenylalanine ethyl ester and the differences observed were rationalized in terms of compound surface activity. Evidence is given that matrix selection is the key experimental parameter affecting the extent of beam-induced dehalogenation of chlorpromazine in LSIMS. Of the eleven matrices used, the greatest extent of dehalogenation was observed in glycerol. Sulfur-containing matrices consistently exhibited a lower extent of dehalogenation than oxygen-containing aliphatic matrices, implying that sulfur is implicated in mitigating the reduction process. Dehalogenation was totally inhibited in 2-hydroxyethyl disulfide, 4-hydroxybenzenesulfonic acid and 3-nitrobenzyl alcohol. Similarly, the use of matrix additives such as 3-nitrobenzyl alcohol and trifluoroacetic acid was found to be useful in inhibiting the extent of dehalogenation occurring in glycerol.     

Mechanism for dehalogenation reactions in fast atom bombardment mass spectrometry

The mechanism of a dehalogenation reaction that occurs during fast atom bombardment (FAB) mass spectrometry was examined using halogenated nucleosides as model compounds. For aglycone-halogenated nucleosides, an inverse linear relationship exists between the extent of FAB dehalogenation and the calculated electron affinity of an individual nucleoside. The degree of dehalogenation for a given nucleoside also varies inversely with the calculated electron affinity of most FAB matrices. The observed dehalogenation reaction can be completely inhibited when matrices with positive electron affinities, such as 3-nitrobenzyl alcohol and 2-hydroxyethyl disulfide, are used. High-performance liquid chromatographic analysis of the bulk glycerol matrix following exposure to the FAB beam indicates measurable amounts of dehalogenated product, suggesting that this reaction occurs in the condensed phase prior to gas-phase ion formation. A dehalogenation mechanism involving thermal electron capture and subsequent negative charge stabilization is consistent with these observations.     

Method for improved secondary ion yields in cluster secondary ion mass spectrometry

A method to increase useful yields of organic molecules is investigated by cluster secondary ion mass spectrometry (SIMS). Glycerol drops were deposited onto various inkjet‐printed arrays and the organic molecules in the film were rapidly incorporated into the drop. The resulting glycerol/analyte drops were then probed with fullerene primary ions under dynamic SIMS conditions. High primary ion beam currents were shown to aid in the mixing of the glycerol drop, thus replenishing the probed area and sustaining high secondary ion yields. Integrated secondary ion signals for tetrabutylammonium iodide and cocaine in the glycerol drops were enhanced by more than a factor of 100 compared with an analogous area on the surface, and a factor of 1000 over the lifetime of the glycerol drop. Once the analyte of interest is incorporated into the glycerol microdrop, the solution chemistry can be tailored for enhanced secondary ion yields, with examples shown for cyclotrimethylenetrinitramine (RDX) chloride adduct formation. In addition, depositing localized glycerol drops may enhance analyte secondary ion count rates to high enough levels to allow for site‐specific chemical maps of molecules in complex matrices such as biological tissues. Published in 2010 by John Wiley & Sons, Ltd.     

Secondary ion mass spectrometry of organic materials with the use of a glycerol matrix

Changes in the concentration of solute molecules in a glycerol matrix were studied using mass spectrometry of secondary ions that appeared under the bombardment of a sample-solution by primary ions. The objects of study were several organic dyes and glucose oxidase. The concentration of solute molecules in the surface layer of the matrix was determined by the competition between the destruction of analyte molecules by primary ions and the replenishment of the number of undamaged molecules as a result of diffusion from the bulk.     

Injection of reagent ions into the selvedge region in fast-atom bombardment mass spectrometry

A divided probe that incorporates a potassium aluminosilicate glass target and an analyte/glycerol matrix target, spatially separated, was used to inject potassium ions (K⁺) into the high-pressure “selvedge” region formed above the analyte/glycerol matrix target during fast-atom bombardment (FAB); [M+K]⁺ adduct ions that represent the types of gas-phase neutral molecules present in the selvedge region are observed. Computer modeling assisted in designing the divided target and an additional ion optical element for the FAB ion source to optimize interactions between K⁺ ions and the desorbed neutral molecules. The capability of injecting K⁺ ions into the FAB experiment has utility in both mechanistic studies and analyses. Experimental results here are consistent with a model for the desorption/ionization processes in FAB in which some types of neutral analyte molecules are desorbed intact and are subsequently protonated by glycerol chemical ionization. Unstable protonated molecules undergo unimolecular decomposition to yield observed fragment ions. The use of K⁺ cationization of analytes for molecular weight confirmation is demonstrated, as well as its utility in FAB experiments in which mixtures are encountered.     

Reduction processes in fast atom bombardment mass spectrometry: Methylene blue in glycerol-thioglycerol and glycerol-nitrobenzyl alcohol matrices

Reduction of the methylene blue cation during fast atom bombardment was studied in glycerol–thioglycerol and glycerol–nitrobenzyl alcohol matrices. The relative abundances of reduced species are significantly lower in a matrix containing 0.2 m thioglycerol in glycerol than they are in pure thioglycerol. Pure 3-nitrobenzyl alcohol or a glycerol–nitrobenzyl alcohol mixture is a less effective matrix material. These results are discussed in terms of a postulated mechanism for the formation of the reduced dye cation species.     

Suppression and enhancement of secondary ion formation due to the chemical environment in static-secondary ion mass spectrometry

Through analyzing mixtures of compounds of known gas-phase basicities, the importance of this property on the secondary ions emitted from a surface under primary ion bombardment is investigated. The aim is to obtain a greater understanding of the ionization mechanisms that occur in secondary ion mass spectrometry (SIMS). The commonly used matrix assisted laser desorption/ionization (MALDI) matrix 2,4,6-trihydroxyacetophenone (THAP) and a range of low molecular weight biomolecules were used to investigate whether analyte/matrix suppression effects that have been observed in analogous MALDI experiments were also present in static-SIMS. The outcome of the experiments demonstrates that strong suppression of the quasi-molecular signal of one molecule in a mixture can occur due to the presence of the other, with the gas-phase basicity of the compounds being a good indicator of the secondary ions detected. It is also demonstrated that the suppression of the quasi-molecular ion signal of a compound in a two-component mixture can be minimized by the inclusion of a third compound of suitable gas-phase basicity.     

Time-of-flight secondary ion mass spectrometry of matrix-diluted oligo- and polypeptides bombarded with slow and fast projectiles: Positive and negative matrix and analyte ion yields, background signals, and sample aging

Human angiotensin II, chain B of bovine insulin, and porcine insulin were determined by time-of-flight secondary ion mass spectrometry under impact of approximately 25 keV Xe+ and SF5+ ion beams and approximately 100 MeV 252Cf fission fragments. Matrix-embedded samples, dissolved in a large surplus of alpha-cyano-4-hydroxycinnamic acid, were prepared by nebulizer spray deposition, neat samples by the droplet technique. It is shown that the status of the sample can be assessed by evaluating the matrix-specific features of the mass spectra. The beneficial effect of matrix isolation was small for angiotensin but large for the insulin samples, which did not show parent peaks from neat material. Negative ion yields under SF5+ impact were up to a factor of 50 higher than with Xe+. For positive secondary ions, the enhancement was much smaller. The mass spectra produced by slow ion beams or fast fission fragments were qualitatively similar. Quantitative differences include the following: with fast projectiles the yields were about 10-30 times higher than with slow ions, but similar for negative ion emission under SF5+ bombardment; the analyte-to-matrix yield ratios were higher with slow ions and up to 250 times higher than the molar analyte concentration; for analyte ions the peak-to-background ratios were higher using slow projectiles; the fraction of carbon-rich collisionally formed molecular ions was much higher with fast projectiles. Sample aging in vacuum for up to five weeks strongly reduced the yield of protonated analyte molecules ejected by slow ion impact, but not of deprotonated species. Hence protonation seems to correlate with sample "wetness" or the presence of volatile proton-donating additives.     

Negative fast atom bombardment ionization of aromatic sulfonic acids: unusual sample-matrix interaction

The most intense ion(s) in negative ion fast atom bombardment (FAB) mass spectra of 2- and 4-benzaldehyde sulfonic acid (BSA) in glycerol or 3-nitrobenzyl alcohol matrix corresponds to a covalent association of the analyte with one or two matrix molecules accompanied by the elimination of a molecule of water. The molecular ion [M - H](-), however, is of low abundance. The identity of the resulting ions [M + nA - H(2)O - H](-) (where M is the analyte and A is the matrix) was confirmed by exact mass measurement using the peak matching technique. These covalent matrix-analyte complexes were not observed when the sulfonic acid functionality in BSA was substituted with COOH, NO(2), and OH or when the sulfonic acid was in salt form. These observations indicate that the free sulfonic acid group in BSA is responsible for the covalent adduct formation. To our knowledge, analyte-matrix covalent association in negative ion FAB spectra of BSA has not been reported previously.     

N-Alkylnicotinium halides: A class of cationic matrix additives for enhancing the sensitivity in negative ion Fast-Atom bombardment mass spectrometry of polyanionic analytes

The addition of some surfactants to the fast-atom bombardment (FAB) matrix previously has been demonstrated to enhance analyte signals in fast-atom bombardment mass spectrometry. In particular, cationic surfactants appear to enhance the negative ion FAB detectability of analytes that exist as anionic species in the matrix solution. It has been proposed that the charged surfactant concentrates the oppositely charged analyte near the surface, which results in larger signals for the analyte. Cationic surfactants that contain a fixed positive charge and an additional basic site were prepared with different hydrophobic moieties and were evaluated for their effectiveness as FAB matrix additives. The compound N-octylnico-tinium bromide (ONBr) is shown to improve greatly the analyte-related signals in negative ion fast-atom bombardment mass spectrometry for a variety of polyanionic analytes, relative to other surfactants (e.g., cetylpyridinium salts). This surfactant not only enhances detectability, but also simplifies the pseudomolecular ion region of the resulting spectra by reducing or eliminating metal cation adduct peaks. The simple mechanism of enhancement via surface activity is evaluated, and alternative mechanisms are considered. It is clearly shown that ONBr, as a FAB matrix additive, will allow mass spectrometry to be used for the analysis of anionic compounds that normally exhibit very low responses.     

Evaluation of the true effect of experimental parameters on the reduction / oxidation processes observed in fast-atom bombardment/liquid secondary spectrometry

The peak intensities observed in the molecular ion regions of fast-atom bombardment/liquid secondary ion mass spectra contain contributions from the parent ion species, its one- and two-electron reduction/oxidation products, and chemical background signal due to beaminduced damage. There are several solution and instrumental parameters that can affect the distribution of peak intensities in the molecular ion region. In this study, the analyte concentration and primary beam density and energy were varied systematically to investigate their effects on the measured peak intensities. A computer algorithm, Simbroc (Simulated Background and Reduction/Oxidation Calculations), was designed to deconvolute the observed intensities into their individual components so that the true effects of experimental parameters on redox extent and background levels could be evaluated. The algorithm is based on a comprehensive seven-variable mathematical model for experimental data simulation. The results obtained using the algorithm after its validation indicate that the primary beam energy does not significantly affect redox extent or background levels. Changes in analyte concentration and primary beam density tend to play a more important role in the generation of redox products and beam-induced damage. The background level generally increases as the analyte concentration is lowered for the peptide systems used in this study. An increase in the primary beam density often leads to higher background levels, although the effect is less detectable for samples that have a low (less than 3%) background signal. The apparent two-electron reduction is generally lower at the higher concentrations; however, the “true” reduction occurring for pentaphenylalanine does not show a significant concentration effect.     

Sensitivity of fast-atom bombardment mass spectrometry to various polymorphic forms of cortisone acetate.

The present paper discusses non-traditional possibilities of the applications of mass spectrometry to the detection and study of differences in crystal polymorphic forms. The parameter of fast-atom bombardment which is sensitive to different polymorphs, namely the rate of the formation of cluster ions of an analyte with the glycerol matrix, was chosen for study. Using as an example the analysis of four different samples of cortisone acetate, varying in their polymorphic forms, treatment procedures, and dispersion of the crystalline powder, it is shown that the relative intensity of the cluster ion [MGH]+ (where M represents the analyte and G a molecule of glycerol) differs for two of the polymorphic forms and is the same for one of these forms, whether it is obtained by recrystallization from chloroform or by cryogrinding. Analysis of the time dependences of the [MGH]+ ion intensity allowed us to detect finer effects in the samples, associated with cryogrinding, namely differences in solubility and presumably, mechanoactivation.     

Tuning the electron affinity and secondary electron emission of diamond (100) surfaces by Diels-Alder reaction

The tuning of electron affinity and secondary electron emission on diamond (100) surfaces due to cycloaddition with 1,3-butadiene is investigated by photoemission experiments and density functional theory (DFT) calculations. A significant reduction in electron affinity up to 0.7 eV and enhancement of secondary electron emission were observed after 1,3-butadiene adsorption. The lowering of vacuum level via 1,3-butadiene adsorption is supported by DFT calculations. The C-H bonds in the covalently bonded organics on diamond contribute to the enhanced secondary electron emission and reduced electron affinity in a mechanism similar to that of C-H bonds on hydrogenated diamond surfaces. This combination of strong secondary emission and low electron affinity by the organic functionalization of diamond has potential applications in diamond-based molecular electronic devices.     

9,10‐Diphenylanthracene as a matrix for MALDI‐MS electron transfer secondary reactions

The most common secondary‐ionization mechanism in positive ion matrix‐assisted laser desorption/ionization (MALDI) involves a proton transfer reaction to ionize the analyte. Peptides and proteins are molecules that have basic (and acidic) sites that make them susceptible to proton transfer. However, non‐polar, aprotic compounds that lack basic sites are more difficult to protonate, and creating charged forms of this type of analyte can pose a problem when conventional MALDI matrices are employed. In this case, forming a radical molecular ion through electron transfer is a viable alternative, and certain matrices may facilitate the process. In this work, we investigate the performance of a newly developed electron‐transfer secondary reaction matrix: 9,10‐diphenylanthracene (9,10‐DPA). The use of 9,10‐DPA as matrix for MALDI analysis has been tested using several model compounds. It appears to promote ionization through electron transfer in a highly efficient manner as compared to other potential matrices. Thermodynamic aspects of the observed electron transfers in secondary‐ionization reactions were also considered, as was the possibility for kinetically controlled/endothermic, electron‐transfer reactions in the MALDI plume. Copyright © 2012 John Wiley & Sons, Ltd.     

Reaction of cis-3-chloroacrylic acid dehalogenase with an allene substrate, 2,3-butadienoate: hydration via an enamine

cis-3-Chloroacrylic acid dehalogenase (cis-CaaD) catalyzes the hydrolytic dehalogenation of cis-3-haloacrylates to yield malonate semialdehyde. The enzyme processes other substrates including an allene (2,3-butadienoate) to produce acetoacetate. In the course of a stereochemical analysis of the cis-CaaD-catalyzed reaction using this allene, the enzyme was unexpectedly inactivated in the presence of NaBH(4) by the reduction of a covalent enzyme-substrate bond. Covalent modification was surprising because the accumulated evidence for cis-CaaD dehalogenation favored a mechanism involving direct substrate hydration mediated by Pro-1. However, the results of subsequent mechanistic, pre-steady state and full progress kinetic experiments are consistent with a mechanism in which an enamine forms between Pro-1 and the allene. Hydrolysis of the enamine or an imine tautomer produces acetoacetate. Reduction of the imine species is likely responsible for the observed enzyme inactivation. This is the first reported observation of a tautomerase superfamily member functioning by covalent catalysis. The results may suggest that some fraction of the cis-CaaD-catalyzed dehalogenation of cis-3-haloacrylates also proceeds by covalent catalysis.     

Factors influencing the analytical performance of an atmospheric sampling glow discharge ionization source as revealed via ionization dynamics modeling

A kinetic model is developed for the dynamic events occurring within an atmospheric sampling glow discharge that affect its performance as an ion source for analytical mass spectrometry. The differential equations incorporate secondary electron generation and thermalization, reagent and analyte ion formation via electron capture and ion-molecule reactions, ion loss via recombination processes, diffusion, and ion-molecule reactions with matrix components, and the sampling and pumping parameters of the source. Because the ion source has a flow-through configuration, the number densities of selected species can be estimated by applying the steady-state assumption. However, understanding of its operation is aided by knowledge of the dynamic behavior, so numerical methods are applied to examine the time dependence of those species as well. As in other plasma ionization sources, the ionization efficiency is essentially determined by the ratio of the relevant ion formation and recombination rates. Although thermal electron and positive reagent ion number densities are comparable, the electron capture/ion-molecule reaction rate coefficient ratio is normally quite large and the ion-electron recombination rate coefficient is about an order of magnitude greater than that for ion-ion recombination. Consequently, the efficiency for negative analyte ion formation via electron capture is generally superior to that for positive analyte ion generation via ion-molecule reaction. However, the efficiency for positive analyte ion formation should be equal to or better than that for negative analyte ions when both ionization processes occur via ion-molecule reaction processes (with comparable rate coefficients), since the negative reagent ion density is considerably less than that for positive reagent ions. Furthermore, the particularly high number densities of thermal electrons and reagent ions leads to a large dynamic range of linear response for the source. Simulation results also suggest that analyte ion number densities might be enhanced by modification of the standard physical and operating parameters of the source.     

Is there a ‘matrix suppression effect’ under fast‐atom bombardment liquid secondary ion mass spectrometry of ionic surfactants in glycerol?

Some features of a ‘matrix suppression effect’ caused by ionic surface‐active compounds under fast‐atom bombardment (FAB) liquid secondary ion mass spectrometry (LSIMS) are being revised. It is shown that abundant transfer of the glycerol matrix molecules to the gas phase does occur under FAB‐LSIMS of ionic surfactants, contrary to popular belief. This process can be obscure because of the dependence of the charge state of the glycerol‐containing cluster ions on the type of ionic surfactant. It is revealed that, while glycerol matrix signals are really completely suppressed in the positive ion mass spectra of cationic surfactants (decamethoxinum, aethonium), abundant deprotonated glycerol and glycerol‐anion clusters are recorded in the negative ion mode. In the case of an anionic surfactant (sodium dodecyl sulfate), on the contrary, glycerol is completely suppressed in the negative ion mode, but is present in the protonated and cationized forms in the positive ion mass spectra. It is suggested that such patterns of positive and negative ion FAB‐LSIMS spectra of ionic surfactants solutions reflect the structure and composition of the electric double layer formed at the vacuum‐liquid interface by organic cations or anions and their counterions. Processes leading to the formation of the glycerol‐containing ions preferentially of positive or negative charge are discussed. The most obvious of them is efficient binding of glycerol to inorganic counterions of the salts Cl^? or Na⁺, which is confirmed by data from quantum chemical calculations. The high content of the counterions and relatively small content of glycerol in the sputtered zone may be responsible for the charge‐selective suppression of neat glycerol clusters of opposite charge to the counterions. In the case of a mixture of cationic and anionic surfactants the substitution of inorganic counterions by organic ones was observed. The dependence of the exchange rate in the surface layer is not a linear function of the bulk solution concentration, and an effect of abrupt recharging of the surface can be registered. No both positively or negatively charged pure glycerol and glycerol‐inorganic counterion clusters are recorded for the mixture. Correlations between the mass spectrometric observations and some phenomena of surface and colloid chemistry and physics are discussed. Copyright © 2007 John Wiley & Sons, Ltd.     

If the ionization mechanism in fast-atom bombardment involves ion/molecule reactions, what are the reagent ions? The time dependence of fast-atom bombardment mass spectra and parallels to chemical ionization

The evaporation in vacuo of the matrices used and the particle-induced desorption of matrix molecules in fast-atom bombardment (FAB) contribute to a proposed high pressure region above the FAB matrix known as the selvedge region. If the neutral number density is sufficiently high, ions formed upon bombardment may undergo collisions with molecules, yielding matrix-related cluster ions and, in cases when the analyte is desorbed in neutral form, protonated and deprotonated analyte molecules. Similarities with the chemical ionization (CI experiment have been pointed out previously and are further developed here. If FAB is similar to CI, then the response depends on the structures of the reagent ions — those ions that react with gas phase analyte molecules. We consider here the time dependence of positive and negative ion FAB spectra to attempt to identify the reagent ions of FAB. A model is suggested for the FAB ion source which evaluates similarities to a CI source, as well as spatial aspects that are unique to desorption/ionization techniques.     

Origins and structures of background ions produced by fast-atom bombardment of glycerol

Accurate mass measurements were used to assign elemental compositions and tandem mass spectrometry was used to characterize the peak-at-every-mass background ions produced by kiloelectron-volt-particle bombardment of neat fast-atom bombardment matrices. The majority of the background ions observed in the mass spectrum of neat glycerol was identified. On the basis of the experiments with glycerol, a theory for the formation of background ions is presented. Results are discussed according to the chemical and physical changes that ygoe;on-volt-particle bombardment produces in the matrix.     

A comparative study of a liquid and a solid matrix in matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and collision cross section measurements

We present experimental matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) results comparing a liquid (glycerol/K(4)[Fe(CN)(6)]) and a solid matrix (2,5-dihydroxybenzoic acid, DHB) with respect to analyte signal stability and initial ion velocity. For applications requiring stable production of analyte ions over a long period of time, the liquid matrix is superior to the solid matrix. The stable analyte ion signal obtained from a liquid matrix allowed the measurement of collision cross sections of small poly(ethylene glycol) (PEG(n)) adduct ions in the flight tube with good resolution. The initial velocity of these adduct ions was measured. It was found that analyte molecules from the liquid matrix have initial ion velocities significantly smaller than those from the solid matrix. MALDI-TOF measurements for large molecules using a liquid matrix are therefore likely to result in smaller systematic errors in mass calibrations due to initial ion velocity.