Crystallographic studies of cinnamamide derivatives as a means of searching for anticonvulsant activity

A cinnamamide (3‐phenylprop‐2‐enamide) core is present in many pharmacologically active compounds. We report three new crystal structures of N‐substituted cinnamamide derivatives which were screened for anticonvulsant activity, namely (R ,S )‐(2E )‐N‐(2‐hydroxypropyl)‐3‐phenylprop‐2‐enamide, C₁₂H₁₅NO₂, ( 1 ), (R ,S )‐(2E )‐N‐(1‐hydroxybutan‐2‐yl)‐3‐phenylprop‐2‐enamide, C₁₃H₁₇NO₂, ( 2 ), and (2E )‐1‐(4‐hydroxypiperidin‐1‐yl)‐3‐phenylprop‐2‐en‐1‐one, C₁₄H₁₇NO₂, ( 3 ). Compounds ( 1 ) and ( 2 ) crystallize in the Pbca space group with one molecule in the asymmetric unit, whereas compound ( 3 ) crystallizes in the P 2₁/c space group with two molecules in the asymmetric unit. All the crystal structures are stabilized by intermolecular O—H…O hydrogen bonds and additionally by N—H…O hydrogen bonds in the structures of ( 1 ) and ( 2 ). The investigated compounds possess fragments that are considered as beneficial for anticonvulsant activity. The conformations of these compounds were analyzed in comparison with the characteristic features of the proposed pharmacophore model of anticonvulsants active in the maximal electroshock test, i.e. a phenyl ring or other hydrophobic unit, an electron‐donor atom and a hydrogen‐bond acceptor/donor domain. In the reported series, two calculated distances fitted the reference model, while the third did not. Structure–activity analysis suggests that anticonvulsant properties may be related to the N‐atom substituent. It is beneficial to combine an electron‐donor atom (e.g. an O atom) with an H atom in the substituent to ensure appropriate interactions with the molecular target. We analyzed the intermolecular interactions in order to find an appropriate spatial arrangement of the important features responsible for anticonvulsant activity.     

Influence of the position of the methyl substituent and N‐oxide formation on the geometry and intermolecular interactions of 1‐(phenoxyethyl)piperidin‐4‐ol derivatives

Aminoalkanol derivatives have attracted much interest in the field of medicinal chemistry as part of the search for new anticonvulsant drugs. In order to study the influence of the methyl substituent and N‐oxide formation on the geometry of molecules and intermolecular interactions in their crystals, three new examples have been prepared and their crystal structures determined by X‐ray diffraction. 1‐[(2,6‐Dimethylphenoxy)ethyl]piperidin‐4‐ol, C₁₅H₂₃NO₂, 1 , and 1‐[(2,3‐dimethylphenoxy)ethyl]piperidin‐4‐ol, C₁₅H₂₃NO₂, 2 , crystallize in the orthorhombic system (space groups P2₁2₁2₁ and Pbca, respectively), with one molecule in the asymmetric unit, whereas the N‐oxide 1‐[(2,3‐dimethylphenoxy)ethyl]piperidin‐4‐ol N‐oxide monohydrate, C₁₅H₂₃NO₃·H₂O, 3 , crystallizes in the monoclinic space group P2₁/c, with one N‐oxide molecule and one water molecule in the asymmetric unit. The geometries of the investigated compounds differ significantly with respect to the conformation of the O—C—C linker, the location of the hydroxy group in the piperidine ring and the nature of the intermolecular interactions, which were investigated by Hirshfeld surface and corresponding fingerprint analyses. The crystal packing of 1 and 2 is dominated by a network of O—H…N hydrogen bonds, while in 3 , it is dominated by O—H…O hydrogen bonds and results in the formation of chains.     

Influence of protonation on the geometry of 2-{[(2,6-dimethylphenoxy)ethyl]amino}-1-phenylethan-1-ol: crystal structures of the free base and of its chloride and 3-hydroxybenzoate salt forms

The aroxyalkylaminoalcohol derivatives are a group of compounds known for their pharmacological action. The crystal structures of four new xylenoxyaminoalcohol derivatives having anticonvulsant activity are reported, namely, 2-{[2-(2,6-dimethylphenoxy)ethyl]amino}-1-phenylethan-1-ol, C₁₈H₂₃NO₂, 1 , the salt N-[2-(2,6-dimethylphenoxy)ethyl]-1-hydroxy-1-phenylethan-2-aminium 3-hydroxybenzoate, C₁₈H₂₄NO₂⁺·C₇H₅O₃^?, 2 , and two polymorphs of the salt (R)-N-[2-(2,6-dimethylphenoxy)ethyl]-1-hydroxy-1-phenylethan-2-aminium chloride, C₁₈H₂₄NO₂⁺·Cl^?, 3 and 3p . Both polymorphs crystallize in the space group P2₁2₁2 and each has two cations and two anions in the asymmetric unit (Z′ = 2). The molecules in the polymorphs show differences in their molecular conformations and intermolecular interactions. The crystal packing of neutral 1 is dominated by intermolecular O—H…N hydrogen bonds, resulting in the formation of one-dimensional chains. In the crystal structures of the salt forms ( 2 , 3 and 3p ), each protonated N atom is engaged in a charge-assisted hydrogen bond with the corresponding anion. The protonation of the N atom also influences the conformation of the molecular linker between the two aromatic rings and changes the orientation of the rings. The crystal packing of the salt forms is dominated by intermolecular O—H…O hydrogen bonds, resulting in the creation of chains and rings. Structural studies have been enriched by the calculation of Hirshfeld surfaces and the corresponding fingerprint plots.     

Manganese(II), lead(II) and cadmium(II) coordination complexes containing a tetrazole‐based acylamide ligand: synthesis and the influence of the metal ions on the structures

Three new manganese(II), lead(II) and cadmium(II) coordination complexes have been prepared by reaction of N‐(1H‐tetrazol‐5‐yl)cinnamamide (HNTCA) with divalent metal salts (MnCl₂, PbCl₂ and CdCl₂) in a mixed‐solvent system, affording mononuclear to trinuclear structures namely, bis(methanol‐κO)bis[5‐(3‐phenylprop‐2‐enamido)‐1H‐1,2,3,4‐tetrazol‐1‐ido‐κ²N¹,O]manganese(II), [Mn(C₁₀H₈N₅O)₂(CH₃OH)₂], (1), bis[μ‐5‐(3‐phenylprop‐2‐enamido)‐1H‐1,2,3,4‐tetrazol‐1‐ido]‐κ³N¹,O:N²;κ³N²:N¹,O‐bis{aqua[5‐(3‐phenylprop‐2‐enamido)‐1H‐1,2,3,4‐tetrazol‐1‐ido‐κ²N¹,O]lead(II)}, [Pb₂(C₁₀H₈N₅O)₄(H₂O)₂], (2), and hexakis[μ₂‐5‐(3‐phenylprop‐2‐enamido)‐1H‐1,2,3,4‐tetrazol‐1‐ido‐κ³N¹,O:N²]tricadmium(II), [Cd₃(C₁₀H₈N₅O)₆], (3). The structures of these three compounds reveal that the nature of the metal ions and the side groups of the organic building blocks have a significant effect on the structures of the coordination compounds formed. Intermolecular hydrogen bonds link the molecules into two‐dimensional [complex (1)] and three‐dimensional hydrogen‐bonded networks. Complexes (2) and (3) show significant fluorescence, while complex (1) displays no fluorescence.     

Conversion of 3‐amino‐4‐arylamino‐1H‐isochromen‐1‐ones to 1‐arylisochromeno[3,4‐d][1,2,3]triazol‐5(1H)‐ones: synthesis,spectroscopic characterization and the structures of four products and one ring‐opened derivative

An efficient synthesis of 1‐arylisochromeno[3,4‐d][1,2,3]triazol‐5(1H)‐ones, involving the diazotization of 3‐amino‐4‐arylamino‐1H‐isochromen‐1‐ones in weakly acidic solution, has been developed and the spectroscopic characterization and crystal structures of four examples are reported. The molecules of 1‐phenylisochromeno[3,4‐d][1,2,3]triazol‐5(1H)‐one, C₁₅H₉N₃O₂, (I), are linked into sheets by a combination of C—H…N and C—H…O hydrogen bonds, while the structures of 1‐(2‐methylphenyl)isochromeno[3,4‐d][1,2,3]triazol‐5(1H)‐one, C₁₆H₁₁N₃O₂, (II), and 1‐(3‐chlorophenyl)isochromeno[3,4‐d][1,2,3]triazol‐5(1H)‐one, C₁₅H₈ClN₃O₂, (III), each contain just one hydrogen bond which links the molecules into simple chains, which are further linked into sheets by π‐stacking interactions in (II) but not in (III). In the structure of 1‐(4‐chlorophenyl)isochromeno[3,4‐d][1,2,3]triazol‐5(1H)‐one, (IV), isomeric with (III), a combination of C—H…O and C—H…π(arene) hydrogen bonds links the molecules into sheets. When compound (II) was exposed to a strong acid in methanol, quantitative conversion occurred to give the ring‐opened transesterification product methyl 2‐[4‐hydroxy‐1‐(2‐methylphenyl)‐1H‐1,2,3‐triazol‐5‐yl]benzoate, C₁₇H₁₅N₃O₃, (V), where the molecules are linked by paired O—H…O hydrogen bonds to form centrosymmetric dimers.     

Substituent position effect on the crystal structures of N‐phenyl‐2‐phthalimidoethanesulfonamide derivatives

In order to determine the impact of different substituents and their positions on intermolecular interactions and ultimately on the crystal packing, unsubstituted N‐phenyl‐2‐phthalimidoethanesulfonamide, C₁₆H₁₄N₂O₄S, (I), and the N‐(4‐nitrophenyl)‐, C₁₆H₁₃N₃O₆S, (II), N‐(4‐methoxyphenyl)‐, C₁₆H₁₆N₃O₆S, (III), and N‐(2‐ethylphenyl)‐, as the monohydrate, C₁₈H₁₈N₂O₄S·H₂O, (IV), derivatives have been characterized by single‐crystal X‐ray crystallography. Sulfonamides (I) and (II) have triclinic crystal systems, while (III) and (IV) are monoclinic. Although the molecules differ from each other only with respect to small substituents and their positions, they crystallized in different space groups as a result of differing intra‐ and intermolecular hydrogen‐bond interactions. The structures of (I), (II) and (III) are stabilized by intermolecular N—H…O and C—H…O hydrogen bonds, while that of (IV) is stabilized by intermolecular O—H…O and C—H…O hydrogen bonds. All four structures are of interest with respect to their biological activities and have been studied as part of a program to develop anticonvulsant drugs for the treatment of epilepsy.     

Vier Natrium‐di(arensulfonyl)amide: Lamellare Schichten mit kurzen Zwischenschichtkontakten C–H…O(Nitro), C–H…F–C oder C–I…I–C

Structures of Ionic Di(arenesulfonyl)amides. 3. Four Sodium Di(arenesulfonyl)amides: Lamellar Layers Exhibiting Short C–H…O(nitro), C–H…F–C, or C–I…I–C Interlayer Contacts Low‐temperature X‐ray crystal structures are reported for NaN(SO₂C₆H₄‐4‐X)₂ · n H₂O, where X = NO₂ and n = 3 ( 1 , monoclinic, space group P2₁, Z = 2), X = F and n = 3 ( 2 , monoclinic, P2₁/c, Z = 4), X = F and n = 1 ( 3 , orthorhombic, Pccn, Z = 8), or X = I and n = 1 ( 4 , monoclinic, P2₁/c, Z = 4). The four compounds are examples of layered inorgano‐organic solids where the inorganic component is comprised of metal cations, N(SO₂)₂ groups and H₂O molecules and the outer regions are formed by the 4‐substituted phenyl rings of the folded anions. In the two‐dimensional coordination networks, the cations adopt either an octahedral [Na(O–S)₂(OH₂)₄] ( 1 , 2 ) or a distorted monocapped octahedral [NaN(O–S)₄(OH₂)₂] ( 3 , 4 ) environment. Taking into account the differing crystal symmetries within the two pairs of compounds, it is remarkable that the trihydrates 1 / 2 and the monohydrates 3 / 4 each display chemically identical and nearly isometric Na–O or Na–O/N networks. In the crystal packings, parallel layers are connected through weak hydrogen bonds C–H…O(nitro) ( 1 ) or C–H…F ( 2 , 3 ), or through short “type I” I…I contacts ( 4 ). There is good evidence that the strikingly distinct crystal symmetries in the halogenated homologues 3 / 4 are determined by the specific complementarity requirements of the interlayer binding centres.     

Conformational flexibility in amidophosphoesters: a CSD analysis completed with two new crystal structures of (C6H5O)2P(O)X [X = NHC7H13 and N(CH2C6H5)2]

The crystal structures of diphenyl (cycloheptylamido)phosphate, C₁₉H₂₄NO₃P or (C₆H₅O)₂P(O)(NHC₇H₁₃), ( I ), and diphenyl (dibenzylamido)phosphate, C₂₆H₂₄NO₃P or (C₆H₅O)₂P(O)[N(CH₂C₆H₅)₂], ( II ), are reported. The NHC₇H₁₃ group in ( I ) provides two significant hydrogen‐donor sites in N—H…O and C—H…O hydrogen bonds, needed for a one‐dimensional hydrogen‐bond pattern along [100] in the crystal, while ( II ), with a (C₆H₅CH₂)₂N moiety, lacks these hydrogen bonds, but its three‐dimensional supramolecular structure is mediated by C—H…π interactions. The conformational behaviour of the phenyl rings in ( I ), ( II ) and analogous structures from the Cambridge Structural Database (CSD) were studied in terms of flexibility, volume of the other group attached to phosphorus and packing forces. From this study, synclinal (±sc), anticlinal (±ac) and antiperiplanar (±ap) conformations were found to occur. In the structure of ( II ), there is an intramolecular C_ortho—H…O interaction that imposes a +sc conformation for the phenyl ring involved. For the structures from the CSD, the +sc and ±ap conformations appear to be mainly imposed by similar C_ortho—H…O intramolecular interactions. The large contribution of the C…H/H…C contacts (32.3%) in the two‐dimensional fingerprint plots of ( II ) is a result of the C—H…π interactions. The differential scanning calorimetry (DSC) analyses exhibit peak temperatures (T_m) at 109 and 81 °C for ( I ) and ( II ), respectively, which agree with the strengths of the intermolecular contacts and the melting points.     

A concise and versatile route to tetrahydro‐1‐benzazepines carrying [a]‐fused heterocyclic units: synthetic sequence and spectroscopic characterization,and the molecular and supramolecular structures of one intermediate and two products

A concise, efficient and versatile route from simple starting materials to tricyclic tetrahydro‐1‐benzazepines carrying [a]‐fused heterocyclic units is reported. Thus, the easily accessible methyl 2‐[(2‐allyl‐4‐chlorophenyl)amino]acetate, (I), was converted, via (2RS,4SR)‐7‐chloro‐2,3,4,5‐tetrahydro‐1,4‐epoxy‐1‐benzo[b]azepine‐2‐carboxylate, (II), to the key intermediate methyl (2RS,4SR)‐7‐chloro‐4‐hydroxy‐2,3,4,5‐tetrahydro‐1H‐benzo[b]azepine‐2‐carboxylate, (III). Chloroacetylation of (III) provided the two regioisomers methyl (2RS,4SR)‐7‐chloro‐1‐(2‐chloroacetyl)‐4‐hydroxy‐2,3,4,5‐tetrahydro‐1H‐benzo[b]azepine‐2‐carboxylate, (IVa), and methyl (2RS,4SR)‐7‐chloro‐4‐(2‐chloroacetoxy)‐2,3,4,5‐tetrahydro‐1H‐benzo[b]azepine‐2‐carboxylate, C₁₄H₁₅Cl₂NO₄, (IVb), as the major and minor products, respectively, and further reaction of (IVa) with aminoethanol gave the tricyclic target compound (4aRS,6SR)‐9‐chloro‐6‐hydroxy‐3‐(2‐hydroxyethyl)‐2,3,4a,5,6,7‐hexahydrobenzo[f]pyrazino[1,2‐a]azepine‐1,4‐dione, C₁₅H₁₇ClN₂O₄, (V). Reaction of ester (III) with hydrazine hydrate gave the corresponding carbohydrazide (VI), which, with trimethoxymethane, gave a second tricyclic target product, (4aRS,6SR)‐9‐chloro‐6‐hydroxy‐4a,5,6,7‐tetrahydrobenzo[f][1,2,4]triazino[4,5‐a]azepin‐4(3H)‐one, C₁₂H₁₂ClN₃O₂, (VII). Full spectroscopic characterization (IR, ¹H and ¹³C NMR, and mass spectrometry) is reported for each of compounds (I)–(III), (IVa), (IVb) and (V)–(VII), along with the molecular and supramolecular structures of (IVb), (V) and (VII). In each of (IVb), (V) and (VII), the azepine ring adopts a chair conformation and the six‐membered heterocyclic rings in (V) and (VII) adopt approximate boat forms. The molecules in (IVb), (V) and (VII) are linked, in each case, into complex hydrogen‐bonded sheets, but these sheets all contain a different range of hydrogen‐bond types: N—H…O, C—H…O, C—H…N and C—H…π(arene) in (IVb), multiple C—H…O hydrogen bonds in (V), and N—H…N, O—H…O, C—H…N, C—H…O and C—H…π(arene) in (VII).     

A new two‐dimensional ZnII coordination polymer based on 1,3‐bis(2‐methyl‐1H‐imidazol‐1‐yl)benzene and 5‐nitrobenzene‐1,3‐dicarboxylic acid: synthesis,crystal structure and physical properties

A novel two‐dimensional (2D) Zn^II coordination framework, poly[[μ‐1,3‐bis(2‐methyl‐1H‐imidazol‐1‐yl)benzene](μ‐5‐nitrobenzene‐1,3‐dicarboxylato)zinc(II)], [Zn(C₈H₃NO₆)(C₁₄H₁₄N₄)]_n or [Zn(NO₂‐BDC)(1,3‐BMIB)]_n [1,3‐BMIB is 1,3‐bis(2‐methyl‐1H‐imidazol‐1‐yl)benzene and NO₂‐H₂BDC is 5‐nitrobenzene‐1,3‐dicarboxylic acid], has been prepared and characterized by IR, elemental analysis, thermal analysis and single‐crystal X‐ray diffraction. Single‐crystal X‐ray diffraction analysis revealed that the compound is a new 2D polymer with a 6³ topology parallel to the (10) crystal planes based on left‐handed helices, right‐handed helical NO₂‐BDC–Zn chains and [Zn₂(1,3‐BMIB)₂]_n clusters. In the crystal, adjacent layers are further connected by C—H…O hydrogen bonds, C—H…π interactions, C—O…π interactions and N—O…π interactions to form a three‐dimensional structure in the solid state. In addition, the compound exhibits strong fluorescence emissions in the solid state at room temperature.     

Crystal packing in the structures of diethanolamine derivatives

Four distinct hydrogen‐bonding topologies were observed in the structures of six diethanolamine ligands. These compounds are (1R*,2R*)‐2‐[(2‐hydroxyethyl)(methyl)amino]‐1,2‐diphenylethanol, C₁₇H₂₁NO₂, (I), 1‐[(2S)‐2‐(hydroxydiphenylmethyl)pyrrolidin‐1‐yl]‐2‐methylpropan‐2‐ol, C₂₁H₂₇NO₂, (II), 2‐[(2‐hydroxyethyl)(methyl)amino]‐1,1‐diphenylethanol, C₁₇H₂₁NO₂, (III), 1‐{(2‐hydroxy‐2‐methylpropyl)[(1S)‐1‐phenylethyl]amino}‐2‐methylpropan‐2‐ol, C₁₆H₂₇NO₂, (IV), 1‐{[(2R)‐2‐hydroxy‐2‐phenylethyl][(1S)‐1‐phenylethyl]amino}‐2‐methylpropan‐2‐ol, C₂₀H₂₇NO₂, (V), and (1R*,2S*)‐2‐[(2‐hydroxyethyl)(methyl)amino]‐1,2‐diphenylethanol, C₁₇H₂₁NO₂, (VI). In each compound, all `active' hydroxy H atoms are engaged in hydrogen bonding, but the N atoms are not involved in intermolecular hydrogen bonding. In the structures of (I), (II) and (IV)–(VI), molecules are linked into chains by intermolecular O—H...O interactions. These chains are organized in such a way as to hide the hydrophilic groups inside, and so the outer surfaces of the chains are hydrophobic. The structure of (VI) contains two distinct non‐equivalent systems of intermolecular O—H...O hydrogen bonds formed by disordered hydroxy H atoms.     

Qualitative and quantitative analysis of intermolecular interactions in xanthenedione derivatives

The existence of intermolecular interactions and the conformational geometry adopted by molecules are related to biological activity. Xanthenedione molecules are promising and emerging antioxidants and acetylcholinesterase inhibitors. To examine the role of different functional groups involved in the intermolecular interactions and conformational geometries adopted in xanthenediones, a series of three substituted xanthenediones have been crystallized [9‐(3‐hydroxyphenyl)‐3,3,6,6‐tetramethyl‐3,4,5,6,7,9‐hexahydro‐1H‐xanthene‐1,8(2H)‐dione, C₂₃H₂₆O₄, 9‐(5‐bromo‐2‐methoxyphenyl)‐3,3,6,6‐tetramethyl‐3,4,6,7‐tetrahydro‐2H‐xanthene‐1,8(5H,9H)‐dione, C₂₄H₂₇BrO₄, and 3,3,6,6‐tetramethyl‐9‐(pyridin‐2‐yl)‐3,4,6,7‐tetrahydro‐2H‐xanthene‐1,8(5H,9H)‐dione, C₂₂H₂₅NO₃] and their intermolecular interactions analyzed via Hirshfeld analysis. The results show that all the derivatives adopt the same structural conformation, where the central ring has a shallow boat conformation and the outer rings have a twisted boat conformation. The intermolecular interactions in the molecules are predominantly O—H…O, C—H…O and π–π interactions. The optimized structures of the derivatives from theoretical B3LYP/6‐311G** calculations show a good correlation with the experimental structures. The lattice energy involved in the intermolecular interactions has been explored using PIXELC.     

Three‐dimensional hydrogen‐bonded framework structures in flunarizinium nicotinate and flunarizinediium bis(4‐toluenesulfonate) dihydrate

The structures of two salts of flunarizine, namely 1‐bis[(4‐fluorophenyl)methyl]‐4‐[(2E)‐3‐phenylprop‐2‐en‐1‐yl]piperazine, C₂₆H₂₆F₂N₂, are reported. In flunarizinium nicotinate {systematic name: 4‐bis[(4‐fluorophenyl)methyl]‐1‐[(2E)‐3‐phenylprop‐2‐en‐1‐yl]piperazin‐1‐ium pyridine‐3‐carboxylate}, C₂₆H₂₇F₂N₂⁺·C₆H₄NO₂⁻, (I), the two ionic components are linked by a short charge‐assisted N—H...O hydrogen bond. The ion pairs are linked into a three‐dimensional framework structure by three independent C—H...O hydrogen bonds, augmented by C—H...π(arene) hydrogen bonds and an aromatic π–π stacking interaction. In flunarizinediium bis(4‐toluenesulfonate) dihydrate {systematic name: 1‐[bis(4‐fluorophenyl)methyl]‐4‐[(2E)‐3‐phenylprop‐2‐en‐1‐yl]piperazine‐1,4‐diium bis(4‐methylbenzenesulfonate) dihydrate}, C₂₆H₂₈F₂N₂²⁺·2C₇H₇O₃S⁻·2H₂O, (II), one of the anions is disordered over two sites with occupancies of 0.832 (6) and 0.168 (6). The five independent components are linked into ribbons by two independent N—H...O hydrogen bonds and four independent O—H...O hydrogen bonds, and these ribbons are linked to form a three‐dimensional framework by two independent C—H...O hydrogen bonds, but C—H...π(arene) hydrogen bonds and aromatic π–π stacking interactions are absent from the structure of (II). Comparisons are made with some related structures.     

Mechanochemical synthesis and X‐ray structural characterization of three 3‐nitrophenol cocrystals with three aminal cage azaadamantanes: the role of the stereoelectronic effect on intermolecular hydrogen‐bonding patterns

The structures of the cocrystalline adducts of 3‐nitrophenol (3‐NP) with 1,3,5,7‐tetraazatricyclo[3.3.1.1^3,7]decane [HMTA, ( 1 )] as the 2:1:1 hydrate, 2C₆H₅NO₃·C₆H₁₂N₄·H₂O, ( 1a ), with 1,3,6,8‐tetraazatricyclo[4.3.1.1^3,8]undecane [TATU ( 2 )] as the 2:1 cocrystal, 2C₆H₅NO₃·C₇H₁₄N₄, ( 2a ), and with 1,3,6,8‐tetraazatricyclo[4.4.1.1^3,8]dodecane [TATD, ( 3 )] as the 2:1 cocrystal, 2C₆H₅NO₃·C₈H₁₆N₄, ( 3a ), are reported. In the binary crystals ( 2a ) and ( 3a ), the 3‐nitrophenol molecules are linked via O—H…N hydrogen bonds into aminal cage azaadamantanes. In ( 1a ), the structure is stabilized by O—H…N and O—H…O hydrogen bonds, and generates ternary cocrystals. There are C—H…O hydrogen bonds present in all three cocrystals, and in ( 1a ), there are also C—H…O and C—H…π interactions present. The presence of an ethylene bridge in the structures of ( 2 ) and ( 3 ) defines the formation of a hydrogen‐bonded motif in the supramolecular architectures of ( 2a ) and ( 3a ). The differences in the C—N bond lengths of the aminal cage structures, as a result of hyperconjugative interactions and electron delocalization, were analysed. These three cocrystals were obtained by the solvent‐free assisted grinding method. Crystals suitable for single‐crystal X‐ray diffraction were grown by slow evaporation from a mixture of hexanes.     

Effect of the position of a methoxy substituent on the antimicrobial activity and crystal structures of 4‐methyl‐1,6‐diphenylpyrimidine‐2(1H)‐selenone derivatives

Derivatives of pyrimidine‐2(1H)‐selenone are a group of compounds with very strong antimicrobial activity. In order to study the effect of the position of the methoxy substituent on biological activity, molecular geometry and intermolecular interactions in the crystal, three derivatives were prepared and evaluated with respect to their antimicrobial activities, and their crystal structures were determined by X‐ray diffraction. The investigated compounds, namely, 1‐(X‐methoxyphenyl)‐4‐methyl‐6‐phenylpyrimidine‐2(1H)‐selenones (X = 2, 3 and 4 for 1 , 2 and 3 , respectively), C₁₈H₁₆N₂OSe, showed very strong activity against selected strains of Gram‐positive bacteria and fungi. Two compounds, 1 and 2 , crystallize in the monoclinic space group P2₁/c, while 3 crystallizes in the space group P2₁/n; 1 has two molecules in the asymmetric unit and the other two ( 2 and 3 ) have one molecule. The geometries of the investigated compounds differ slightly in the mutual orientations of the aromatic and pyrimidineselenone rings. The O atom in 1 stabilizes the conformation of the molecules via intramolecular C—H…O hydrogen bonding. The packing of molecules is determined by weak C—H…N and C—H…Se intermolecular interactions and additionally in 1 and 2 by C—H…O intermolecular interactions. The introduction of the methoxy substituent results in greater selectivity of the investigated compounds.     

3D Coordination Polymers with Chiral Structures, [Ln2(tda)2(H2O)3]·5H2O: Hydrothermal Synthesis,Structural Characterization,and Luminescent Properties

Reactions of H₃tda (H₃tda = 1H‐1, 2, 3‐triazole‐4, 5‐dicarboxylic acid) with Sm(NO₃)₃ · 6H₂O, Eu(NO₃)₃ · 6H₂O, and Tb(NO₃)₃ · 6H₂O, in the presence of NaOH under hydrothermal conditions, produced three new coordination polymers, [Ln₂(tda)₂(H₂O)₃] · 5H₂O [Ln = Sm ( 1 ), Eu ( 2 ), Tb ( 3 )]. These compounds were structurally characterized by elemental analysis, IR spectroscopy, thermogravimetric analysis (TGA), PXRD and single‐crystal X‐ray diffraction. The single‐crystal X‐ray diffraction studies of compounds 1 – 3 reveal that all compounds are three‐dimensional porous structures with chiral frameworks. Furthermore, the luminescence studies of compound 2 and 3 in the solid state reveal that they are potential luminescent materials at room temperature.     

Weak C—H...O hydrogen bonds in anisaldehyde,salicylaldehyde and cinnamaldehyde

In situ cryocrystallization has been employed to grow single crystals of 4‐methoxybenzaldehyde (anisaldehyde), C₈H₈O₂, 2‐hydroxybenzaldehyde (salicylaldehyde), C₇H₆O₂, and (2E)‐3‐phenylprop‐2‐enal (cinnamaldehyde), C₉H₈O, all of which are liquids at room temperature. Several weak C—H...O interactions of the types C_aryl—H...O, C_formyl—H...O and Csp³—H...O are present in these related crystal structures.     

Conformational study of (Z)‐5‐(4‐chlorobenzylidene)‐2‐[4‐(2‐hydroxyethyl)piperazin‐1‐yl]‐3H‐imidazol‐4(5H)‐one in different environments: insight into the structural properties of bacterial efflux pump inhibitors

The 2‐amine derivatives of 5‐arylidene‐3H‐imidazol‐4(5H )‐one are a new class of bacterial efflux pump inhibitors, the chemical compounds that are able to restore antibiotic efficacy against multidrug resistant bacteria. 5‐Arylidene‐3H‐imidazol‐4(5H )‐ones with a piperazine ring at position 2 reverse the mechanisms of multidrug resistance (MDR) of the particularly dangerous Gram‐negative bacteria E. coli by inhibition of the efflux pump AcrA/AcrB/TolC (a main multidrug resistance mechanism in Gram‐negative bacteria, consisting of a membrane fusion protein, AcrA, a Resistant‐Nodulation‐Division protein, AcrB, and an outer membrane factor, TolC). In order to study the influence of the environment on the conformation of (Z )‐5‐(4‐chlorobenzylidene)‐2‐[4‐(2‐hydroxyethyl)piperazin‐1‐yl]‐3H‐imidazol‐4(5H )‐one, ( 3 ), two different salts were prepared, namely with picolinic acid {systematic name: 4‐[(Z )‐4‐(4‐chlorobenzylidene)‐5‐oxo‐3,4‐dihydro‐1H‐imidazol‐2‐yl]‐1‐(2‐hydroxyethyl)piperazin‐1‐ium pyridine‐2‐carboxylate, C₁₆H₂₀ClN₄O₂⁺·C₆H₄NO₂⁻, ( 3 a )} and 4‐nitrophenylacetic acid {systematic name: 4‐[(Z )‐4‐(4‐chlorobenzylidene)‐5‐oxo‐3,4‐dihydro‐1H‐imidazol‐2‐yl]‐1‐(2‐hydroxyethyl)piperazin‐1‐ium 2‐(4‐nitrophenyl)acetate, C₁₆H₂₀ClN₄O₂⁺·C₈H₆NO₄⁻, ( 3 b )}. The crystal structures of the new salts were determined by X‐ray diffraction. In both crystal structures, the molecule of ( 3 ) is protonated at an N atom of the piperazine ring by proton transfer from the corresponding acid. The carboxylate group of picolinate engages in hydrogen bonds with three molecules of the cation of ( 3 ), whereas the carboxylate group of 4‐nitrophenylacetate engages in hydrogen bonds with only two molecules of ( 3 ). As a consequence of these interactions, different orientations of the hydroxyethyl group of ( 3 ) are observed. The crystal structures are additionally stabilized by both C—H…N [in ( 3 a )] and C—H…O [in ( 3 a ) and ( 3 b )] intermolecular interactions. The geometry of the imidazolone fragment was compared with other crystal structures possessing this moiety. The tautomer observed in the crystal structures presented here, namely 3H‐imidazol‐4(5H )‐one [systematic name: 1H‐imidazol‐5(4H )‐one], is also that most frequently observed in other structures containing this heterocycle.     

Supramolecular architectures of succinates of 1‐hydroxypropan‐2‐aminium derivatives

Aminoalkanol and aroxyalkyl derivatives are known as potential anticonvulsants. Two new salts, namely bis{(R,S)‐N‐[2‐(2,6‐dimethylphenoxy)ethyl]‐1‐hydroxypropan‐2‐aminium} succinate ( 1s ), C₁₃H₂₂NO₂⁺·0.5C₄H₄O₄²⁻, and bis{(S)‐(+)‐N‐[2‐(2,6‐dimethylphenoxy)ethyl]‐1‐hydroxypropan‐2‐aminium} succinate ( 2s ), C₁₃H₂₂NO₂⁺·0.5C₄H₄O₄²⁻, have been prepared and characterized by single‐crystal X‐ray diffraction. The N atoms are protonated by proton transfer from succinic acid. Salt 1s crystallizes in the space group P2₁/n with one cation and half an anion in the asymmetric unit across an inversion centre, while ( 2s ) crystallizes in the space group P2₁ with four cations and two anions in the asymmetric unit. The hydroxy group of the cation of 1s is observed in two R/S disorder positions. The crystals of these two salts display similar supramolecular architectures (i.e. two‐dimensional networks), built mainly by intermolecular N⁺—H…O^δ− and O—H…O^δ− hydrogen bonds, where `δ−' represents a partial charge. The succinate anions are engaged in hydrogen bonds, not only with protonated N atoms, but also with hydroxy groups.