聚合物链构象的研究I: 1,2-聚丁二烯的构象分析

本文应用Flory的链分子统计理论研究1,2-聚丁二烯的链构象,选择固定键长和键角的分子模型,计算构象能,构成势能面图,并由势能面的构型积分,得到了表征1,2-聚丁二烯链构象特征的统计权重矩阵.     

Bond energies and formation enthalpies of mono- and polyradicals in nitroalkanes 1. Nitromethanes

The enthalpies of formation of nitromethane derivatives were obtained on the basis of experimental and literature data. The procedure for the calculation of the bond dissociation energies in nitromethanes from the atomization enthalpies and energies of nonvalent interactions of nitro groups was proposed. The calculated values were compared with the data on the thermal decomposition kinetics. The atomization enthalpies and energies of nonvalent interactions of nitro groups were also used for the calculation of the bond dissociation energies in radicals.     

Actinide sulfides in the gas phase: experimental and theoretical studies of the thermochemistry of AnS (An = Ac, Th, Pa, U, Np, Pu, Am and Cm)

The gas-phase thermochemistry of actinide monosulfides, AnS, was investigated experimentally and theoretically. Fourier transform ion cyclotron resonance mass spectrometry was employed to study the reactivity of An(+) and AnO(+) (An = Th, Pa, U, Np, Pu, Am and Cm) with CS(2) and COS, as well as the reactivity of the produced AnS(+) with oxidants (COS, CO(2), CH(2)O and NO). From these experiments, An(+)-S bond dissociation energies could be bracketed. Density functional theory studies of the energetics of neutral and monocationic AnS (An = Ac, Th, Pa, U, Np, Pu, Am and Cm) provided values for bond dissociation energies and ionization energies; the computed energetics of neutral and monocationic AnO were also obtained for comparison. The theoretical data, together with comparisons with known An(+)-O bond dissociation energies and M(+)-S and M(+)-O dissociation energies for the early transition metals, allowed for the refining of the An(+)-S bond dissociation energy ranges obtained from experiment. Examination of the reactivity of AnS(+) with dienes, coupled to comparisons with reactivities of the AnO(+) analogues, systematic considerations and the theoretical results, allowed for the estimation of the ionization energies of the AnS; the bond dissociation energies of neutral AnS were consequently derived. Estimates for the case of AcS were also made, based on correlations of the data for the other An and the electronic energetics of neutral and ionic An. The nature of the bonding in the elementary molecular actinide chalcogenides (oxides and sulfides) is discussed, based on both the experimental data and the computed electronic structures. DFT calculations of ionization energies for the actinide atoms and the diatomic sulfides and oxides are relatively reliable, but the calculation of bond dissociation energies is not uniformly satisfactory, either with DFT or CCSD(T). A key conclusion from both the experimental and theoretical results is that the 5f electrons do not substantially participate in actinide-sulfur bonding. We emphasize that actinides form strikingly strong bonds with both oxygen and sulfur.     

The Influence of the Exchange-Correlation Functional on the Non-Interacting Kinetic Energy and Its Implications for Orbital-Free Density Functional ApproximationsSCI北大核心CSCD

In this work it is shown that the kinetic energy and the exchange-correlation energy are mutual dependent on each other.This aspect is first derived in an orbital-free context.It is shown that the total Fermi potential depends on the density only,the individual parts,the Pauli kinetic energy and the exchange-correlation energy,however,are orbital dependent and as such mutually influence each other.The numerical investigation is performed for the orbital-based non-interacting Kohn-Sham system in order to avoid additional effects due to further approximations of the kinetic energy.The numerical influence of the exchange-correlation functional on the non-interacting kinetic energy is shown to be of the orderof a few Hartrees.For chemical purposes,however,the energetic performance as a function of the nuclear coordinates is much more important than total energies.Therefore,the effect on the bond dissociation curve was studied exemplarily for the carbon monoxide.The data reveals that,the mutual influence between the exchange-correlation functional and the kinetic energy has a significant influence on bond dissociation energies and bond distances.Therefore,the effect of the exchange-correlation treatment must be considered in the design of orbital-free density functional approximations for the kinetic energy.     

Bond energies and the enthalpies of formation of mono- and polyradicals in nitroalkanes 2. Nitro derivatives of ethane and propane

Based on the experimental results and the published data, the enthalpies of formation of ethane and propane nitro derivatives were obtained for both the standard state and gas phase. The bond dissociation energies of the ethane and propane nitro derivatives were calculated using the enthalpies of atomization and the energies of nonvalent interactions of nitro groups. The calculated values were compared with the kinetic data on thermal decomposition. The bond dissociation energies in radicals of the ethane and propane nitro derivatives were also calculated using the enthalpies of atomization and the energies of nonvalent interactions of nitro groups. Regularities of changes in the bond dissociation energies of the ethane and propane nitro derivatives and their radicals were established.     

Principal component analysis of the main factors of line intensity enhancements observed in oscillating direct current plasma

Enhancement of emission line intensities by induced oscillations of direct current (DC) arc plasma with continuous aerosol sample supply was investigated using multivariate statistics. Principal component analysis (PCA) was employed to evaluate enhancements of 34 atomic spectral lines belonging to 33 elements and 35 ionic spectral lines belonging to 23 elements. Correlation and classification of the elements were done not only by a single property such as the first ionization energy, but also by considering other relevant parameters. Special attention was paid to the influence of the oxide bond strength in an attempt to clarify/predict the enhancement effect. Energies of vaporization, atomization, and excitation were also considered in the analysis. In the case of atomic lines, the best correlation between the enhancements and first ionization energies was obtained as a negative correlation, with weak consistency in grouping of elements in score plots. Conversely, in the case of ionic lines, the best correlation of the enhancements with the sum of the first ionization energies and oxide bond energies was obtained as a positive correlation, with four distinctive groups of elements. The role of the gas-phase atom-oxide bond energy in the entire enhancement effect is underlined.     

Theoretical evidence that Cu(I) complexation promotes degradation of S-nitrosothiols

The degradation of S-nitrosothiols (RSNOs) to release NO is believed to be catalyzed by CuI ions, but the mechanism remains unclear. Kinetic experiments have shown that decomposition rates vary significantly with the chemical nature of the RSNO considered. On the basis of first-principles calculations, the catalytic role of CuI ion is investigated for the decomposition of S-nitrosocysteine and its N-acetylated and ethyl ester derivatives, and for S-nitrosohomocysteine. This preliminary study focuses on the CuI-RSNO intermediates involved in the decomposition pathway. The model chemistry has been validated by comparing calculated CuI-ligand binding energies and S-N bond homolysis energies with available experimental data. Calculations show that the formation of CuI-RSNO intermediates results in weakening of the S-N bond and strengthening of the N-O bond, which would promote S-N bond breaking and NO release from S-nitrosothiols.     

Local exchange-correlation approximations and first-row molecular dissociation energies

Recent Xα calculations of bond energies and other related properties of first-row diatomic molecules show very encouraging agreement with experiment. In the worst cases, however, the Xα dissociation energies overestimate the experimental values by almost 2 eV. Therefore, we have examined several refinements of the Xα theory and their effects on molecular bond lengths, bond energies, and vibrational frequencies. Among them, gradient corrections to the Xα exchange energy and also some variations of the local spin-density correlation energy approximation are considered. We find that a local exchange-correlation functional with gradient corrections gives dissociation energies in significantly better agreement with experiment than the Xα approximation.     

第一过渡系金属硅烯配合物的理论研究

以HF/6-311+G^*基组研究了硅烯SiH₂同第一过渡系金属的配合物MSiH₂的分子轨道特征及键解离能.MSiH₂为共平面构型.其中基态的3TiSiH₂和4CoSiH₂带有明显的双键特征.M-Si键具有共价性质.M-Si的键解离能,从Sc到Cu呈现周期性变化,这种变化趋势同M的金属离子激发能之间存在近似的线性关系.     

Ab initio valence-bond calculations of H2O

The first and second bond dissociation energies for H₂O have been calculated in anab initio manner using a multistructure valence-bond scheme. The basis set consisted of a minimal number of non-orthogonal atomic orbitals expressed in terms of gaussian-lobe functions. The valence-bond structures considered properly described the change in the molecular system as the hydrogen atoms were individually removed to infinity. The calculated equilibrium geometry for the H₂O molecule has an O-H bond length of 1.83 Bohrs and an HOH bond angle of 106.5°. With 49 valence-bond structures the energy of H₂O at this geometry was ?76.0202 Hartrees. The calculated equilibrium bond length for the OH radical was 1.86 Bohrs and the energy, using the same basis set, was ?75.3875 Hartrees. After correction for zero point energies the calculated bond dissociation energies are: H₂O → OH + H, D₁=75.38 kcal/mole and OH → O+H, D₂=54.79 kcal/mole.     

Ground-state properties of benzenoid hydrocarbons by simple bond orbital resonance theory approach

π-electron energies and bond orders of benzenoid hydrocarbons with up to five fused hexagons have been considered by the simple Bond Orbital Resonance Theory (BORT) approach. The corresponding ground states were determined according to four BORT models. In the first three models a diagonalisation of the Hückel-type Hamiltonian was performed in the bases of Kekulé, of Kekulé and mono-Claus and of Kekulé and Claus resonance structures, respectively. In the fourth model a simple BORT ansatz was used. According to this ansatz, the ground state is a linear combination of the positive Kekulé structures, all with equal coefficients. It was shown that π-electron energies and bond orders obtained by these models correlate much better with the PPP energies and bond orders than with the Hückel energies and bond orders. This indicates that a simple BORT approach is quite reliable in predicting the more sophisticated PPP results. Concerning the relative performance of the four BORT models, the best results were obtained with the BORT ansatz. The performance deteriorates with the expansion of the basis set. This is attributed to the fact that in these models the improvement of the basis set is not accompanied with the corresponding improvement of the Hamiltonian. Comparing the BORT-ansatz bond orders with the Pauling bond orders, it was shown that BORT-ansatz bond orders correlate much better with the PPP bond orders. This revised version was published online in July 2006 with corrections to the Cover Date.     

The structure of gold nanoparticles and Au based thiol self-organized monolayers

Spatial and electronic structure of gold nanoparticles (AuNPs) and AuNPs with thiol base self-assambled monolayers (SAMs) are reviewed. Theoretical and experimental data on the symmetry, bond lengths, band gaps and binding energies are presented. Coordination of sulfur and its compounds to Au structures and AuS bond length emphasized especially. The works on synthesis of thiol based SAMs on AuNPs are reviewed. The applications of EXAFS and photoelectron spectroscopy for the investigated SAMs on AuNPs are considered.     

Theoretical study of environmental effects on proton transfer reaction through the peptide bond in a model system

This study considered the possibility of proton transfer reactions through the peptide bond under different environments using the dipeptide and the 12-mer polyglycine α-helix models, in which diglycine is substituted by the 12-mer polyglycine helix. Ab initio molecular orbital calculations were carried out at the B3LYP/6-31+G(d) level of theory. To evaluate the free energies in solution, calculations of the solvation energies were performed using PCM. The correction functions on the calculated solvation energies were provided to reproduce experimental pKa values. The proton transfer reactions through the peptide bond are concluded to be possible in the protein for a wide range of proton acceptors. His complex has two free energy minima along a putative proton transfer pathway in spite of one minimum in the other complexes. The α-helix is estimated to suppress the proton transfer reactions through the peptide bond at the termini of the helix, although it is possible to proceed when the proton affinity of the acceptor is low. Contribution to the Mark S. Gordon 65th Birthday Festschrift Issue.     

A systematic density functional theory study of the C-N bond cleavage of methylamine on metals

The C-N bond cleavage for the relative large molecule of methylamine on Cu(1111), Ag(111), Au(111), Ni(111), Rh(111), Pd(111), Pt(111), and Mo(100) has been systemically studied using the DFT-GGA method; the reaction energy changes and the activation energies were obtained. The calculated results show that the activation energy of C-N bond cleavage decreases as the metal element goes up and to the left across the periodic table, which is in general agreement with the experimental observation. Moreover, it was found that the steric effect should be considered for the metals with high activity and small radius such as Ni, which is much different from the case for the small molecule decomposition in which the steric effect may be ignored. The linear relationships between the activation energies and electronic properties (d-band center) are presented. It is expected that such a rule can be used to predict the reactivity of metal for other dissociative adsorption systems.     

Estimation of Enthalpies of Alkoxy Radical Formation and Bond Strengths in Alcohols and Ether

Kinetic data on the thermal decomposition of peroxides were analyzed, and energies of the O–O bond dissociation were calculated. Enthalpies of formation of various alkoxy radicals and peroxides were determined. The dissociation energies for the O–H bonds in alcohols and C–O bonds in ethers were estimated. Comparative analysis of literature and obtained data was performed.     

Databases for transition element bonding: metal-metal bond energies and bond lengths and their use to test hybrid, hybrid meta, and meta density functionals and generalized gradient approximations

We propose a data set of bond lengths for 8 selected transition metal dimers (Ag(2), Cr(2), Cu(2), CuAg, Mo(2), Ni(2), V(2), and Zr(2)) and another data set containing their atomization energies and the atomization energy of ZrV, and we use these for testing density functional theory. The molecules chosen for the test sets were selected on the basis of the expected reliability of the data and their ability to constitute a diverse and representative set of transition element bond types while the data sets are kept small enough to allow for efficient testing of a large number of computational methods against a very reliable subset of experimental data. In this paper we test 42 different functionals: 2 local spin density approximation (LSDA) functionals, 12 generalized gradient approximation (GGA) methods, 13 hybrid GGAs, 7 meta GGA methods, and 8 hybrid meta GGAs. We find that GGA density functionals are more accurate for the atomization energies of pure transition metal systems than are their meta, hybrid, or hybrid meta analogues. We find that the errors for atomization energies and bond lengths are not as large if we limit ourselves to dimers with small amounts of multireference character. We also demonstrate the effects of increasing the fraction of Hartree-Fock exchange in multireference systems by computing the potential energy curve for Cr(2) and Mo(2) with several functionals. We also find that BLYP is the most accurate functional for bond energies and is reasonably accurate for bond lengths. The methods that work well for transition metal bonds are found to be quite different from those that work well for organic and other main group chemistry.     

Complete basis set ab initio computational study of ionization potential, electron affinity and the C-F bond dissociation energy for perfluorinated methane derivatives

A computational study of perfluorinated methane derivatives was performed with complete basis set ab initio methods. The total energies for their neutral, cation, and anionic states were computed. From these values, the energy gaps between different electronic states, ionization potentials, electron affinities, and C-F bond dissociation energies were calculated. The computed values are compared with experimental data and the reliability of complete basis set ab initio methods is discussed. New values for C-F bond dissociation energies are suggested. Received: 12 January 1998 / Accepted: 2 April 1998 / Published online: 29 July 1998     

Semiempirical computation of homolytic O-H bond dissociation energies of alcohols: comparison of the AM1 and PM3 methods

The heats of formation of various alcohols and alkoxy radicals were calculated using the AM1 and PM3 semiempirical methods, which were then used to calculate the bond dissociation energies of the alcohols. Both restricted Hartree-Fock (RHF) and unrestricted Hartree-Fock (UHF) calculations were performed to determine which technique was most applicable to the computation of bond dissociation energies within the semiempirical frameworks. It was determined that AM1/RHF calculations gave the most accurate results for O-H bond dissociation energies of alcohols. The effect of using configuration interaction calculations to calculate bond dissociation energies within the semiempirical framework was also examined.     

A new database and benchmark of the bond energies of noble-gas-containing molecules

We have developed a new database of structures and bond energies of 59 noble-gas-containing molecules. The structures were calculated by CCSD(T)/aug-cc-pVTZ methods and the bond energies were obtained using the CCSD(T)/complete basis set method. Many wavefunction-based and density functional theory methods have been benchmarked against the 59 accurate bond energies. Our results show that the MPW1B95, B2GP-PLYP, and DSD-BLYP functionals with the aug-cc-pVTZ basis set excel in predicting the bond energies of noble-gas molecules with mean unsigned errors (MUEs) of 2.0 to 2.1 kcal/mol. When combinations of Dunning's basis sets are used, the MPW1B95, B2GP-PLYP, DSD-BLYP, and BMK functionals give significantly lower MUEs of 1.6 to 1.9 kcal/mol. Doubly hybrid methods using B2GP-PLYP and DSD-BLYP functionals and MP2 calculation also provide satisfactory accuracy with MUEs of 1.4 to 1.5 kcal/mol. If the Ng bond energies and the total atomization energies of a group of 109 main-group molecules are considered at the same time, the MPW1B95/aug-cc-pVTZ single-level method (MUE = 2.7 kcal/mol) and the B2GP-PLYP and DSD-PLYP functionals with combinations of basis sets or using the doubly hybrid method (MUEs = 1.9-2.2 kcal/mol) give the overall best result.