Modeling the COVID-19 epidemic and awareness diffusion on multiplex networks

The coronavirus disease 2019(COVID-19)has been widely spread around the world,and the control and behavior dynamics are still one of the important research directions in the world.Based on the characteristics of COVID-19’s spread,a coupled disease-awareness model on multiplex networks is proposed in this paper to study and simulate the interaction between the spreading behavior of COVID-19 and related information.In the layer of epidemic spreading,the nodes can be divided into five categories,where the topology of the network represents the physical contact relationship of the population.The topological structure of the upper network shows the information interaction among the nodes,which can be divided into aware and unaware states.Awareness will make people play a positive role in preventing the epidemic diffusion,influencing the spread of the disease.Based on the above model,we have established the state transition equation,through the microscopic Markov chain approach(MMCA),and proposed the propagation threshold calculation method under the epidemic model.Furthermore,MMCA iteration and the Monte Carlo method are simulated on the static network and dynamic network,respectively.The current results will be beneficial to the study of COVID-19,and propose a more rational and effective model for future research on epidemics.     

基于手机大数据的中国人口迁徙模式及疫情影响研究

新型冠状病毒感染的肺炎(COVID-19)可通过人员接触与流动迅速传播,因此研究人类迁徙和出行模式的变化对疫情防控至关重要.本文基于手机运营商2020年春运及疫情暴发前后连续两个月的全国地级市之间的人口流动数据,运用时序网络分析方法构建人口流动网络拓扑结构指标,并通过引入地理衰减因子提出Spatial-Louvain社团检测算法,研究平时、春运、疫情防控隔离和生产复工四阶段的人口迁徙模式的时空演化规律.研究发现:受各地疫情防控措施影响,武汉封城后全国城市间人口流量急剧下降,并持续至2月中旬.疫情期间人口流动网络结构呈现四阶段的时空演化模式;本文提出的空间网络社团检测算法比传统Louvain算法平均模块度值提高了14%;中国城市分布以经济交互和地理位置为基础,形成了以核心城市为中心,向周边辐射的城市群格局;疫情因素仅能在短暂时间内改变部分城市的城市群归属,当该因素消失或减弱后,城市群能迅速恢复原有格局.     

Threshold effects for two pathogens spreading on a network

Diseases spread through host populations over the networks of contacts between individuals and a number of results about this process have been derived in recent years by exploiting connections between epidemic processes and bond percolation on networks. Here we investigate the case of two pathogens in a single population, which has been the subject of recent interest among epidemiologists. We demonstrate that two pathogens competing for the same hosts can both spread through a population only for intermediate values of the bond occupation probability that lie above the classic epidemic threshold and below a second higher value, which we call the coexistence threshold, corresponding to a distinct topological phase transition in networked systems.     

Martensitic phase transition from cubic to tetragonal V<Subscript>3</Subscript>Si: an electronic structure study

We analyze the epidemic spread via a contact infection process in an immobile population within the Susceptible-Infected-Removed (SIR) model. We present both the results of stochastic simulations assuming different numbers of individuals (degrees of freedom) per cell as well as the solution of the corresponding deterministic equations. For the last ones we show that the appropriate system of nonlinear partial differential equations (PDE) allows for a complete separation of variables and present the approximate analytical expressions for the infection wave in different ranges of parameters. Comparing these results with the direct Monte-Carlo simulations we discuss the domain of applicability of the PDE models and their restrictions.     

Are Mobility and COVID-19 Related? A Dynamic Analysis for Portuguese Districts

In this research work, we propose to assess the dynamic correlation between different mobility indices, measured on a daily basis, and the new cases of COVID-19 in the different Portuguese districts. The analysis is based on global correlation measures, which capture linear and non-linear relationships in time series, in a robust and dynamic way, in a period without significant changes of non-pharmacological measures. The results show that mobility in retail and recreation, grocery and pharmacy, and public transport shows a higher correlation with new COVID-19 cases than mobility in parks, workplaces or residences. It should also be noted that this relationship is lower in districts with lower population density, which leads to the need for differentiated confinement policies in order to minimize the impacts of a terrible economic and social crisis.     

Optimal control strategy for COVID-19 concerning both life and economy based on deep reinforcement learning

At present, the global COVID-19 is still severe. More and more countries have experienced second or even third outbreaks. The epidemic is far from over until the vaccine is successfully developed and put on the market on a large scale. Inappropriate epidemic control strategies may bring catastrophic consequences. It is essential to maximize the epidemic restraining and to mitigate economic damage. However, the study on the optimal control strategy concerning both sides is rare, and no optimal model has been built. In this paper, the Susceptible-Infectious-Hospitalized-Recovered (SIHR) compartment model is expanded to simulate the epidemic's spread concerning isolation rate. An economic model affected by epidemic isolation measures is established. The effective reproduction number and the eigenvalues at the equilibrium point are introduced as the indicators of controllability and stability of the model and verified the effectiveness of the SIHR model. Based on the Deep Q Network (DQN), one of the deep reinforcement learning (RL) methods, the blocking policy is studied to maximize the economic output under the premise of controlling the number of infections in different stages. The epidemic control strategies given by deep RL under different learning strategies are compared for different reward coefficients. The study demonstrates that optimal policies may differ in various countries depending on disease spread and anti-economic risk ability. The results show that the more economical strategy, the less economic loss in the short term, which can save economically fragile countries from economic crises. In the second or third outbreak stage, the earlier the government adopts the control strategy, the smaller the economic loss. We recommend the method of deep RL to specify a policy which can control the epidemic while making quarantine economically viable.     

Epidemic dynamics behavior in some bus transport networks

We abstract bus transport networks (BTNs) to complex networks using the Space P approach. First, we select three actual BTNs in three major cities in China, namely, Beijing, Shanghai and Hangzhou. Using the SIS model, we simulate and study the epidemic spreading in the three BTNs. We obtain the density of infected vertices varying with time and the stationary density of infected vertices varying with infection rate. Second, we simulate and study the epidemic spreading in a recently introduced BTN evolution model, the network properties of which correspond well with those of actual BTNs. Third, we use mean-field theory to analyze the epidemic dynamics behavior of the BTN evolution model and obtain the theoretical epidemic threshold of this model. The theoretical value agrees well with the simulation results. Based on the work in this paper, we provide the following possible forecasts for epidemic dynamics in actual BTNs. An actual BTN should have a finite positive epidemic threshold. If the effective infection rate is above this threshold, the epidemic spread in the network and the density of infected vertices finally stabilizes in a balanced state. Below this threshold, the number of infected vertices decays exponentially fast and the epidemic cannot spread on a large scale.     

Inference on COVID-19 Epidemiological Parameters Using Bayesian Survival Analysis

The need to provide accurate predictions in the evolution of the COVID-19 epidemic has motivated the development of different epidemiological models. These models require a careful calibration of their parameters to capture the dynamics of the phenomena and the uncertainty in the data. This work analyzes different parameters related to the personal evolution of COVID-19 (i.e., time of recovery, length of stay in hospital and delay in hospitalization). A Bayesian Survival Analysis is performed considering the age factor and period of the epidemic as fixed predictors to understand how these features influence the evolution of the epidemic. These results can be easily included in the epidemiological SIR model to make prediction results more stable.     

Proximity networks and epidemics

Disease spread in most biological populations requires the proximity of agents. In populations where the individuals have spatial mobility, the contact graph is generated by the “collision dynamics” of the agents, and thus the evolution of epidemics couples directly to the spatial dynamics of the population. We first briefly review the properties and the methodology of an agent-based simulation (EPISIMS) to model disease spread in realistic urban dynamic contact networks. Using the data generated by this simulation, we introduce the notion of dynamic proximity networks which takes into account the relevant time-scales for disease spread: contact duration, infectivity period, and rate of contact creation. This approach promises to be a good candidate for a unified treatment of epidemic types that are driven by agent collision dynamics. In particular, using a simple model, we show that it can account for the observed qualitative differences between the degree distributions of contact graphs of diseases with short infectivity period (such as air-transmitted diseases) or long infectivity periods (such as HIV).     

An Improved Heterogeneous Mean-Field Theory for the Ising Model on Complex Networks

Heterogeneous mean-field theory is commonly used methodology to study dynamical processes on complex networks,such as epidemic spreading and phase transitions in spin models.In this paper,we propose an improved heterogeneous mean-field theory for studying the Ising model on complex networks.Our method shows a more accurate prediction in the critical temperature of the Ising model than the previous heterogeneous mean-field theory.The theoretical results are validated by extensive Monte Carlo simulations in various types of networks.     

新型冠状病毒肺炎疫情确诊病例的统计分析及自回归建模

基于安徽省卫生健康委员会截至2020年2月19日公布的800余例新型冠状病毒肺炎病例信息,根据病例中公布的接触史构建确诊患者间的有向传播关系,发现源传染患者中男性居多,被传染患者中女性居多.从病例信息中可知,安徽省新型冠状病毒肺炎疫情的发展从初期的具有武汉居住或接触史的输入病例转入后期本地传播为主的小范围社区传播,且严格的防控隔离措施有效切断了社区内的进一步传播.源传染患者与被传染患者的确诊时间间隔可用G分布拟合,确诊时间间隔的中位数为2 d,平均值为2.67 d.基于有向传播关系的统计特点,构建安徽省疫情发展后期的自回归传播模型,模型仿真结果与疫情发展数据符合.对除湖北省的全国确诊病例数据同样采取自回归建模与仿真,结果仍与疫情发展数据符合.这一发现为控制疫情在湖北省以外区域的防控提供了参考:通过严格的防控措施和隔离措施,疫情在湖北省之外的传播具有很大的黏滞性,多为家庭程度的密切接触传播,且能有效控制新型冠状病毒肺炎在当地的传播深度,有效控制了疫情的蔓延.     

Understanding the Impact of Walkability,Population Density,and Population Size on COVID-19 Spread: A Pilot Study of the Early Contagion in the United States

The novel coronavirus disease 2019 (COVID-19) pandemic is an unprecedented global event that has been challenging governments, health systems, and communities worldwide. Available data from the first months indicated varying patterns of the spread of COVID-19 within American cities, when the spread was faster in high-density and walkable cities such as New York than in low-density and car-oriented cities such as Los Angeles. Subsequent containment efforts, underlying population characteristics, variants, and other factors likely affected the spread significantly. However, this work investigates the hypothesis that urban configuration and associated spatial use patterns directly impact how the disease spreads and infects a population. It follows work that has shown how the spatial configuration of urban spaces impacts the social behavior of people moving through those spaces. It addresses the first 60 days of contagion (before containment measures were widely adopted and had time to affect spread) in 93 urban counties in the United States, considering population size, population density, walkability, here evaluated through walkscore, an indicator that measures the density of amenities, and, therefore, opportunities for population mixing, and the number of confirmed cases and deaths. Our findings indicate correlations between walkability, population density, and COVID-19 spreading patterns but no clear correlation between population size and the number of cases or deaths per 100 k habitants. Although virus spread beyond these initial cases may provide additional data for analysis, this study is an initial step in understanding the relationship between COVID-19 and urban configuration.     

新型冠状病毒肺炎早期时空传播特征分析

通过最新公布的流行病学数据估计了易感者-感染者模型参数,结合百度迁徙数据和公开新闻报道,刻画了疫情前期武汉市人口流动特征,并代入提出的支持人口流动特征的时域差分方程模型进行动力学模拟,得到一些推论:1)未受干预时传染率在一般环境下以95%的置信度位于区间[0.2068,0.2073],拟合优度达到0.999;对应地,基本传染数R0位于区间[2.5510,2.6555];极限环境个案推演的传染率极值为0.2862,相应的R0极值为3.1465;2)百度迁徙规模指数与铁路发送旅客人数的Pearson相关系数达到0.9108,有理由作为人口流动的有效估计;3)提出的模型可有效推演疫情蔓延至外省乃至全国的日期,其中41.38%的预测误差≤1 d,79.31%的预测误差≤3 d,96.55%预测误差≤5 d,总体平均误差约为2.14 d.     

Shift of percolation thresholds for epidemic spread between static and dynamic small-world networks

The study compares the epidemic spread on static and dynamic small-world networks. They are constructed as a 2-dimensional Newman and Watts model (500 × 500 square lattice with additional shortcuts), where the dynamics involves rewiring shortcuts in every time step of the epidemic spread. We assume susceptible-infectious-removed (SIR) model of the disease. We study the behaviour of the epidemic over the range of shortcut probability per underlying bond ϕ = 0–0.5. We calculate percolation thresholds for the epidemic outbreak, for which numerical results are checked against an approximate analytical model. We find a significant lowering of percolation thresholds on the dynamic network in the parameter range given. The result shows the behaviour of the epidemic on dynamic network is that of a static small world with the number of shortcuts increased by 20.7±1.4 %, while the overall qualitative behaviour stays the same. We derive corrections to the analytical model which account for the effect. For both dynamic and static small worlds we observe suppression of the average epidemic size dependence on network size in comparison with the finite-size scaling known for regular lattice. We also study the effect of dynamics for several rewiring rates relative to infectious period of the disease.     

Epidemic spreading on networks with vaccination

In this paper, a new susceptible-infected-susceptible (SIS) model on complex networks with imperfect vaccination is proposed. Two types of epidemic spreading patterns (the recovered individuals have or have not immunity) on scale-free networks are discussed. Both theoretical and numerical analyses are presented. The epidemic thresholds related to the vaccination rate, the vaccination-invalid rate and the vaccination success rate on scale-free networks are demonstrated, showing different results from the reported observations. This reveals that whether or not the epidemic can spread over a network under vaccination control is determined not only by the network structure but also by the medicine's effective duration. Moreover, for a given infective rate, the proportion of individuals to vaccinate can be calculated theoretically for the case that the recovered nodes have immunity. Finally, simulated results are presented to show how to control the disease prevalence.     

A simple statistical physics model for the epidemic with incubation period

Based on the classical SIR model, we derive a simple modification for the dynamics of epidemics with a known incubation period of infection. The model is described by a system of integro-differential equations. Parameters of our model are directly related to epidemiological data. We derive some analytical results, as well as perform numerical simulations. We use the proposed model to analyze COVID-19 epidemic data in Armenia.     

新型冠状病毒肺炎的流行病学参数与模型

一种新型冠状病毒感染导致的肺炎自2019年12月至今在我国以及200多个国家和地区传播.本文旨在介绍近期关于新型冠状病毒肺炎的几个重要流行病学参数的研究进展和估计方法,包括基本再生数、潜伏期和代间隔,同时还介绍两个动力学模型及其结果.这些参数刻画了新型冠状病毒肺炎的传播特点,影响控制策略的制定和有效性.简要来说,新型冠状病毒肺炎的基本再生数R0的中位数为2.6,潜伏期均值约为5.0 d,代间隔均值约为5.5 d.这表明新型冠状病毒肺炎传播速度快.诸如对确诊病人的隔离治疗、对疑似病例的隔离、对密切接触者的追踪、对疾病信息的宣传和采取自我防护等防控措施能有效降低疾病暴发的风险和规模.     

Stochastic epidemics and rumours on finite random networks

In this paper, we investigate the stochastic spread of epidemics and rumours on networks. We focus on the general stochastic (SIR) epidemic model and a recently proposed rumour model on networks in Nekovee et al. (2007) [3], and on networks with different random structures, taking into account the structure of the underlying network at the level of the degree–degree correlation function. Using embedded Markov chain techniques and ignoring density correlations between neighbouring nodes, we derive a set of equations for the final size of the epidemic/rumour on a homogeneous network that can be solved numerically, and compare the resulting distribution with the solution of the corresponding mean-field deterministic model. The final size distribution is found to switch from unimodal to bimodal form (indicating the possibility of substantial spread of the epidemic/rumour) at a threshold value that is higher than that for the deterministic model. However, the difference between the two thresholds decreases with the network size, n, following a n^−1/3 behaviour. We then compare results (obtained by Monte Carlo simulation) for the full stochastic model on a homogeneous network, including density correlations at neighbouring nodes, with those for the approximating stochastic model and show that the latter reproduces the exact simulation results with great accuracy. Finally, further Monte Carlo simulations of the full stochastic model are used to explore the effects on the final size distribution of network size and structure (using homogeneous networks, simple random graphs and the Barabasi–Albert scale-free networks).     

Epidemic propagation on adaptive coevolutionary networks with preferential local-world reconnecting strategy

In the propagation of an epidemic in a population, individuals adaptively adjust their behavior to avoid the risk of an epidemic. Differently from existing studies where new links are established randomly, a local link is established preferentially in this paper. We propose a new preferentially reconnecting edge strategy depending on spatial distance (PR- SD). For the PR-SD strategy, the new link is established at random with probability p and in a shortest distance with the probability 1 p. We establish the epidemic model on an adaptive network using Cellular Automata, and demonstrate the effectiveness of the proposed model by numerical simulations. The results show that the smaller the value of parameter p, the more difficult the epidemic spread is. The PR-SD strategy breaks long-range links and establishes as many short-range links as possible, which causes the network efficiency to decrease quickly and the propagation of the epidemic is restrained effectively.     

To Freeze or Not to Freeze? Epidemic Prevention and Control in the DSGE Model Using an Agent-Based Epidemic Component

The ongoing COVID-19 pandemic has raised numerous questions concerning the shape and range of state interventions the goals of which are to reduce the number of infections and deaths. The lockdowns, which have become the most popular response worldwide, are assessed as being an outdated and economically inefficient way to fight the disease. However, in the absence of efficient cures and vaccines, there is a lack of viable alternatives. In this paper we assess the economic consequences of the epidemic prevention and control schemes that were introduced in order to respond to the COVID-19 pandemic. The analyses report the results of epidemic simulations that were obtained using the agent-based modelling methods under the different response schemes and their use in order to provide conditional forecasts of the standard economic variables. The forecasts were obtained using the dynamic stochastic general equilibrium model (DSGE) with the labour market component.