Structural effects in poly(3-alkylthiophene)s on the exposition to poor solvent

The exposure to pentane vapour of poly(3-alkylthiophene)s with different alkyl chains produces a modification in the optical properties of the thin films. The treatment induces a red-shift of the electronic absorption maximum and the appearance of vibronic structure in the UV spectra. We have followed these changes with IR and Raman spectroscopies to monitor the modification of the backbone conjugation, and with X-ray diffraction to evidence the structural order of the chains.     

Polymer chain organization and orientation in ultrathin films: A spectroscopic investigation

The effect of confinement on the crystallinity and chain orientation of ultrathin poly(di-n-hexylsilane) films has been investigated using UV absorption, fluorescence and IR spectroscopies. UV absorption measurements in a series of poly(di-n-hexylsilane) films having thicknesses between 50 and 3500 Å have shown that, for thicknesses less than 500 Å, the polymer backbone disorders and extensive crystallization of the films is hindered irrespective of molecular weight or surface hydrophobicity. Fluorescence studies showed that rapid energy transfer occurs from the disordered chain segments to the crystalline ones. The orientation of both the polymer backbone and side chains was probed with IR absorption and grazing incidence reflection measurements. The side chains are extended, although not completely in the all-trans conformation, with their carbon plane mostly perpendicular to the substrate. The backbone lies extended, with the polymer axis parallel to the plane of the film. The hexyl side-chains disorder in films less than 2000 Å thick and this disordering occurs through the introduction of gauche bonds. Our findings suggest the possibility of using thickness to control the chain organization and morphology of a polymer thin film. © 1996 John Wiley & Sons, Inc.     

Chain-length dependence of the conformational order in self-assembled dialkylammonium monolayers on mica studied with soft X-ray absorption

Self-assembled alkyl chain based monolayers on mica are important for industrial and technological processes since they can be employed for an organic modification of the inorganic substrate. The conformational structure and orientational order of the films determine the interaction of the modified substrate with the environment and the chemical character and stability of its surface. We have studied the conformational order in ion exchanged dialkylammonium monolayers adsorbed on mica depending on the length of the alkyl chains systematically with near-edge X-ray absorption fine structure spectroscopy (NEXAFS). In addition, films were characterized by water contact angle measurements. The experimentally determined average tilt angles of the chains are discussed in terms of the degree of order. It was found that the absolute number of gauche defects in the films increases with decreasing chain length.     

Miscibility studies of poly(3-octylthiophene)/poly(ethylene-co-vinylacetate) blends with a solvatochromatic shift in the solid state

The mixing of electrically conducting polymers in the undoped state with flexible polymers has been limited due to the stiffness of the delocalized coplanar backbone. The substitution with alkyl side chains has resulted in the distortion of the aromatic rings in the backbone with an increase of the flexibility. The alkyl substituents also prevent the thiophene back-bones from packing together, thus making blending with other polymers promising. We have investigated the phase behavior of poly(3-octylthiophene) (P3OT) with a flexible polymer, poly(ethylene-co-vinylacetate) (vinylacetate composition 20%, EVA20), and defined a miscibility window based on melting point data, on cloud point measurements, and on analysis by optical microscopy. The miscible region has been studied by UV-VIS and CPMAS NMR spectroscopies. A UV absorption in the visible region originates from a π-π ^* transition in the delocalized structure of P3OT, and a change in the length of the conjugated segment in the backbone results in a shift of this absorption. A gradual solvatochromatic shift of P3OT in the solid state with dilution was observed in the miscible region. T₁ relaxation times for the methylene carbons in solid state show a gradual change in the relaxation process as a function of composition. © 1995 John Wiley & Sons, Inc.     

Differential ordering of the protein backbone and side chains during protein folding revealed by site-specific recombinant infrared probes

The time scale for ordering of the polypeptide backbone relative to the side chains is a critical issue in protein folding. The interplay between ordering of the backbone and ordering of the side chains is particularly important for the formation of β-sheet structures, as the polypeptide chain searches for the native stabilizing cross-strand interactions. We have studied these issues in the N-terminal domain of protein L9 (NTL9), a model protein with mixed α/β structure. We have developed a general approach for introducing site-specific IR probes for the side chains (azide) and backbone ((13)C═(18)O) using recombinant protein expression. Temperature-jump time-resolved IR spectroscopy combined with site-specific labeling enables independent measurement of the respective backbone and side-chain dynamics with single residue resolution. We have found that side-chain ordering in a key region of the β-sheet structure occurs on a slower time scale than ordering of the backbone during the folding of NTL9, likely as a result of the transient formation of non-native side-chain interactions.     

Nucleobase orientation and ordering in films of single-stranded DNA on gold

We demonstrate how the orientation and ordering of DNA bases in ultrahigh vacuum (UHV) and ambient environments can be determined using complementary spectroscopic methods. Near-edge X-ray absorption fine structure (NEXAFS) with fluorescence detection, X-ray photoelectron (XPS), and Fourier transform infrared (FTIR) spectroscopies are used to quantify the coverage, chemical composition, orientation, and ordering of thymine bases in model self-assembled monolayers of thymine homo-oligonucleotides [oligo(dT)] on gold. We find that, in monolayers of thiol-modified oligo(dT), thymine bases tend to orient parallel to the Au substrate, and this preferential orientation is significantly more pronounced in monolayers of thiolated 5-mers compared to 25-mers. We interpret this preferential orientation as a signature of significant correlations (local ordering) between individual nuleobases, which offers a way to quantify and compare nucleobase interactions in films under both ambient and UHV conditions.     

Solvent dependence of the molecular order in ion-exchanged self-assembled dialkylammonium monolayers on mica studied with soft X-ray absorption

Dialkyldimethylammonium films on mica prepared via ion exchange from solution have been reported to be of high quality in terms of their density and molecular orientation. Different preparation procedures are described in the literature. The molecular order and the inclination of the alkyl chains, however, are often deduced from indirect experimental evidence such as the wettability and the film thickness. In the present study we employed near edge X-ray absorption fine structure spectroscopy (NEXAFS) to determine directly the order of the molecules adsorbed from different solvents (water, methanol, water/methanol 1:1, cyclohexanol, and chloroform). It was found that films prepared from different solvents are displaying large differences in the established surface coverage and orientation. In particular, NEXAFS disclosed that the orientation of the alkyl chains can differ significantly even when similar water contact angle values are observed.     

FT–IR spectroscopic study on the thermal and thermal oxidative degradation of nylons

The effects of heat and oxygen on nylon films were studied by FT–IR spectroscopy. Nylons 6, 66 and nylons containing carbonyl groups in either the diamine or the diacid moiety were prepared. Nylon films cast on aluminum were studied in an environmental chamber under controlled conditions. The progress of chemical and physical changes was monitored by FT–IR spectroscopy. Thermal energy caused largely an increase in crystallinity due to annealing and also an increase of nonhydrogen-bonded amide groups, which seemed to entail mainly amide groups from the amorphous region. The intensities of IR absorption bands related to the folded structure reduced as soon as heating began. The IR spectra of the carbonyl groups formed by thermal oxidation showed band shapes that indicated that the formed carbonyl groups were of many different origins. The presence of keto groups purposely inserted into the backbone chains increased the rate of oxidation. Pyrolysis of the nylons was also studied to supplement data obtained at lower temperatures.     

Selective adsorption of atomic hydrogen on a h-BN thin film

The adsorption of atomic hydrogen on hexagonal boron nitride (h-BN) is studied using two element-specific spectroscopies, i.e., near-edge x-ray absorption fine structure (NEXAFS) spectroscopy and x-ray photoelectron spectroscopy (XPS). B K-edge NEXAFS spectra show a clear change in the energy region of the π* band before and after reaction with atomic deuterium. On the other hand, N K-edge NEXAFS spectra show only a little change. B 1s XPS spectra show a distinct component at the low binding energy side of a main component, while N 1s XPS spectra show peak broadening at the high binding energy side. These experimental results are analyzed by the discrete variational Xα method with a core-hole effect and are explained by a model in which hydrogen atoms are preferentially adsorbed on the B sites of h-BN. Based on the experimental and theoretical results, we propose a site-selective property of BN material on adsorption of atomic hydrogen.     

Oligo(vinylidene fluoride) Langmuir-Blodgett films studied by spectroscopic ellipsometry and the density functional theory

Thin films of amphiphilic vinylidene fluoride oligomers prepared by Langmuir-Blodgett deposition on silicone substrates were investigated by comparing experimental and theoretical mid-infrared (IR) spectra. The experimental spectra were obtained using infrared spectroscopic ellipsometry. Theoretical spectra were calculated using density functional theory. Excellent correspondence of major IR bands in both data sets shows that the molecular backbone is oriented with the long axis normal to the substrate plane. This is in contrast to poly(vinylidene fluoride) LB films, in which the polymer chains are parallel to the substrate.     

Surface-energy characteristics of films of molecular brushes based on polyimide and poly(methyl methacrylate)

Surface characteristics of film samples of molecular brushes with a polyimide backbone and PMMA side chains, as well as of films of polyimide constituting the backbone and linear PMMA homopolymers obtained via the selective destruction of the polyimide backbone of these brushes, are investigated for the first time. The surface-energy characteristics of the films of molecular brushes are determined by the structure and conformational state of the PMMA side chains. The conformations of molecular brushes possessing a polyimide backbone well screened by side chains are preserved after the transition from solutions to “dry” copolymer films and are characterized by high stability. The observed surface activity of molecular brushes is due to adhesion interactions with functional groups of the substrate. The difference in surface activities is caused by small-scale conformational changes in the side chains of molecular brushes. A globular core of molecular brushes formed by the polyimide backbone remains practically spherical and probably does not change in volume.     

Control of surface properties using fluorinated polymer brushes produced by surface-initiated controlled radical polymerization

Surface-grafted styrene-based homopolymer and diblock copolymer brushes bearing semifluorinated alkyl side groups were synthesized by nitroxide-mediated controlled radical polymerization on planar silicon oxide surfaces. The polymer brushes were characterized by X-ray photoelectron spectroscopy (XPS), near-edge X-ray absorption fine structure (NEXAFS), and time-dependent water contact angle measurements. Angle-resolved XPS studies and water contact angle measurements showed that, in the case of the diblock copolymer brushes, the second block to be added was always exposed at the polymer-air interface regardless of its surface energy. Values of z*/Rg were estimated based on the radius of gyration, Rg, of the grafted homopolymer or block copolymer chains for the grafted brushes and thickness of the brush, z*. The fact that z*/Rg > 1 suggests that all these brushes are stretched. These results support the idea that after grafting the first block onto the surface the nitroxide-end capped polymer chains were able to polymerize the second block in a "living" fashion and the stretched brush so formed was dense enough that the outermost block in all cases completely covers the surface. NEXAFS analysis showed a relationship between the surface orientation of the fluorinated side chains and brush thickness with thicker brushes having more oriented side chains. Time-dependent water contact angle measurements revealed that the orientation of the side chains of the brush improved the surface stability toward reconstruction upon prolonged exposure to water.     

Layer structure estimation of three‐dimensional crystal and two‐dimensional molecular film for fluorinated comb copolymers

Comb copolymers containing both hydrogenated and fluorinated side‐chains were prepared by copolymerization using acrylic or methacrylic monomers in several ratios. The crystal structures of these copolymers and layer structures of their organized molecular films were investigated by wide‐angle X‐ray diffraction (WAXD), small‐angle X‐ray scattering (SAXS), and out‐of plane X‐ray diffraction. Further, to selectively estimate the regularity of shorter fluorocarbon side‐chains, organized molecular films of copolymers were investigated by polarized near‐edge X‐ray adsorption fine structure (NEXAFS) spectroscopy. From the results of these measurements, it was inferred that these copolymers formed highly ordered layer structures, and a long spacing was predominantly determined by the arrangement of hydrogenated side‐chains, except in copolymers having extremely high fluorocarbon contents. In the case of the organized molecular films, the fluorinated side‐chains of methacrylate copolymers cannot form a highly ordered arrangement, whereas those of acrylate copolymers were oriented on monolayers. However, in both cases, the hydrogenated side‐chains predominantly formed layer structures in the organized films, and the fluorinated side‐chains did not contribute to the formation of the layer structures. © 2008 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 46: 534–546, 2008     

An NMR study of mobility in a crystalline side‐chain comblike polymer

Carbon‐13 spin–lattice relaxation times are measured for poly(octadecyl acrylate) above and below the melting point of the crystalline side chains. The chain backbone has long spin–lattice relaxation times below the melting point that shorten by more than an order of magnitude as the melting point range is traversed. Below the melting point, the backbone is nearly immobilized with spin–lattice relaxation changing very slowly with temperature. Above the melting point, the shorter spin–lattice relaxation times are typical of a rubber above the glass transition and decrease with increasing temperature. The methylene groups in the side chain are quite mobile well below the melting point, indicating fairly rapid anisotropic motion within the crystal. The methyl group at the end of the chain and the adjacent methylene group have longer spin–lattice relaxation times, indicating the greatest side‐chain mobility at the end, which is in the middle of the crystal structure. The side‐chain carbon adjacent to the carbonyl group is as mobile as the majority of the side‐chain carbon, indicating side‐chain mobility extends to all of the side‐chain CH₂ groups. The abrupt transition in the mobility of the backbone is not typical of the amorphous phase in a semicrystalline polymer where the backbone units can crystallize. The close proximity of every backbone segment to the crystalline domain locks backbone segmental motion below the melting point. Melting and crystallization of the side chains switch segmental motion of the backbone on and off. © 2001 John Wiley & Sons, Inc. J Polym Sci Part B: Polym Phys 39: 1548–1552, 2001     

Direct observation of phenylalanine orientations in statherin bound to hydroxyapatite surfaces

Extracellular biomineralization proteins such as salivary statherin control the growth of hydroxyapatite (HAP), the principal component of teeth and bones. Despite the important role that statherin plays in the regulation of hard tissue formation in humans, the surface recognition mechanisms involved are poorly understood. The protein-surface interaction likely involves very specific contacts between the surface atoms and the key protein side chains. This study demonstrates for the first time the power of combining near-edge X-ray absorption fine structure (NEXAFS) spectroscopy with element labeling to quantify the orientation of individual side chains. In this work, the 15 amino acid N-terminal binding domain of statherin has been adsorbed onto HAP surfaces, and the orientations of phenylalanine rings F7 and F14 have been determined using NEXAFS analysis and fluorine labels at individual phenylalanine sites. The NEXAFS-derived phenylalanine tilt angles have been verified with sum frequency generation spectroscopy.     

Adlayers of dimannoside thiols on gold: surface chemical analysis

Carbohydrate films on gold based on dimannoside thiols (DMT) were prepared, and a complementary surface chemical analysis was performed in detail by X-ray photoelectron spectroscopy (XPS), time-of-flight secondary ion mass spectrometry (ToF-SIMS), near-edge X-ray absorption fine structure (NEXAFS), FT-IR, and contact angle measurements in order to verify formation of ω-carbohydrate-functionalized alkylthiol films. XPS (C 1s, O 1s, and S 2p) reveals information on carbohydrate specific alkoxy (C-O) and acetal moieties (O-C-O) as well as thiolate species attached to gold. Angle-resolved synchrotron XPS was used for chemical speciation at ultimate surface sensitivity. Angle-resolved XPS analysis suggests the presence of an excess top layer composed of unbound sulfur components combined with alkyl moieties. Further support for DMT attachment on Au is given by ToF-SIMS and FT-IR analysis. Carbon and oxygen K-edge NEXAFS spectra were interpreted by applying the building block model supported by comparison to data of 1-undecanethiol, poly(vinyl alcohol), and polyoxymethylene. No linear dichroism effect was observed in the angle-resolved C K-edge NEXAFS.     

Near-edge X-ray absorption fine structure investigations of order in carbon nanotube-based systems

Probing order in nanotube systems is of fundamental importance in devising applications of these tubes in field emission applications as well as for components of composite materials. We use near-edge X-ray absorption fine structure (NEXAFS) spectroscopy to qualitatively and quantitatively study the degree of order and alignment in a wide range of carbon nanotube-based systems, including single-walled carbon nanotube (SWNT) powder, SWNT films, and aligned multiwalled carbon nanotubes. The results are compared to analogous data obtained from a highly ordered pyrolytic graphite (HOPG) sample.     

Synthesis and characterization of β-forming poly[S-(ω-N-carbazolylalkyl)-L-cysteine]s

Poly(L -cysteine derivative)s containing carbazole groups in the side chains separated from the backbone by several distances have been synthesized. It is revealed by measuring the IR spectra that they assume the antiparallel-chain pleated sheet (β-conformation) in the solid films independent of side chain length. DSC thermograms, and CD and fluorescence spectra of the films of these polymers are also presented in relation to the alignment of side-chain carbazole groups.     

Photoemission studies of polythiophene and polyphenyl films produced via surface polymerization by ion-assisted deposition

Conducting polymer films are grown by mass-selected, hyperthermal thiophene ions coincident on a surface with a thermal beam of organic monomers of either alpha-terthiophene (3T) or p-terphenyl (3P) neutrals. Mass spectrometry and X-ray photoelectron spectroscopy previously verified polymerization of both 3T and 3P by 200 eV C(4)H(4)S(+) during surface polymerization by ion-assisted deposition (SPIAD). The electronic structure of these films are probed here by ultraviolet photoelectron spectroscopy (UPS) and polarized near-edge X-ray absorption fine structure spectroscopy (NEXAFS) and compared with similar spectra of evaporated films. The conducting polymer films formed by SPIAD display new valence band features resulting from a reduction in both their band gap and barrier to hole injection, which are calculated from the occupied and unoccupied valence band states measured by UPS and NEXAFS. These changes in film electronic structure result from an increase in the electron conjugation length and other changes in film structure induced by SPIAD.     

Surface organization, light-driven surface changes, and stability of semifluorinated azobenzene polymers

A series of polymers with 4-perfluoroalkyl-modified azobenzene side groups was investigated for its light-induced changes in surface properties. The ultraviolet (UV) light activated trans to cis isomerization of the azobenzene group, and the influence of molecular order and orientation on this process were studied using near-edge X-ray absorption fine structure (NEXAFS) spectroscopy and water contact angle measurements. Light-induced molecular reorganization in the near-surface region was studied by NEXAFS using in situ UV irradiation of polymer thin films. Differential scanning calorimetry and wide-angle X-ray scattering studies showed that sufficiently long fluoroalkyl groups formed well-ordered smectic mesophases in the bulk, as well as on the surface, which was evidenced by NEXAFS. The disruption of mesogen packing by photoisomerization was found to be influenced by the fluoroalkyl segment length. Surfaces with perfluorohexyl and perfluorooctyl groups that showed high orientational order were also highly resistant to light-induced changes. In such cases, the trans-cis isomerization resulted in greater lowering of the azobenzene phenyl ring order parameters than the perfluoroalkyl order parameters. UV exposure caused reorientation of the phenyl rings of the azobenzene group, but the terminal perfluoroalkyl segments remained more or less ordered.