The structure of bis(trialkyltin) carbonates: Evidence for two non-equivalent tin sites

Bis(tributyltin) oxide or trimethyltin hydroxide react with carbon dioxide to afford the bis(trialkyltin) carbonates, (R₃SnO)₂CO; ¹¹⁹Sn NMR (in the case of R = Bu) or ^119mSn Mössbauer spectroscopy show that these compounds contain 4- and 5-coordinate tin atom sites.     

Molecular dynamics simulation exploration of cooperative migration mechanism of calcium ions in sarcoplasmic reticulum Ca2+‐ATPase

Calcium ATPase is a member of the P‐type ATPase, and it pumps calcium ions from the cytoplasm into the reticulum against a concentration gradient. Several X‐ray structures of different conformations have been solved in recent years, providing basis for elucidating the active transport mechanism of Ca²⁺ ions. In this work, molecular dynamics (MD) simulations were performed at atomic level to investigate the dynamical process of calcium ions moving from the outer mouth of the protein to their binding sites. Five initial locations of Ca²⁺ ions were considered, and the simulations lasted for 2 or 6 ns, respectively. Specific pathways leading to the binding sites and large structural rearrangements around binding sites caused by uptake of calcium ions were identified. A cooperative binding mechanism was observed from our simulation. Firstly, the first Ca²⁺ ion binds to site I , and then, the second Ca²⁺ ion approaches. The interactions between the second Ca²⁺ and the residues around site I disturb the binding state of site I and weaken its binding ability for the first bound Ca²⁺. Because of the electrostatic repulsion of the second Ca²⁺ and the electrostatic attraction of site II , the first bound Ca²⁺ shifts from site I to site II . Concertedly, the second Ca²⁺ binds to site I , forming a binding state with two Ca²⁺ ions, one at site I and the other at site II . Both of Glu908 and Asp800 coordinate with the two Ca²⁺ ions simultaneously during the concerted binding process, which is believed to be the hinge to achieve the concerted binding. In our simulations, four amino acid residues that serve as the channel to link the outer mouth and the binding sites during the binding process were recognized, namely Tyr837, Tyr763, Asn911, and Ser767. The analyses regarding the activity of the proteins via mutations of some key residues also supported our cooperative mechanism. © 2009 Wiley Periodicals, Inc. J Comput Chem 2009     

Determination of organotin compounds in environmental samples by supercritical fluid extraction and gas chromatography with atomic emission detection

The extraction of six tetraalkyltin and seven ionic organotin compounds from spiked topsoil samples with supercritical carbon dioxide and carbon dioxide modified with 5 percent methanol was investigated. Analysis of the soil extracts was performed by gas chromatography with atomic emission detection. Retention times, minimum detectable concentrations, and detector linear ranges are included for nine organotin compounds (seven of the nine compounds were derivatized with n-pentylmagnesium bromide prior to gas chromatographic analysis). A 2³ factorial experimental design was used to study the effect of three variables (pressure, temperature, and extraction time) on compound recovery. The results indicate that the tetraalkyltin compounds are extracted from topsoil samples with recoveries ranging from 90 to 110 percent. Recoveries for the ionic organotin compounds ranged from 50 to 75 percent for trimethyltin chloride, triethyltin bromide, and tributyltin iodide; they were below 20 percent for dimethyltin dichloride, dibutyltin dichloride, diphenyltin dichloride, and butyltin trichloride. When sodium diethyldithiocarbamate was added to the soil samples prior to extraction, followed by extraction with carbon dioxide modified with 5 percent methanol, recoveries ranged from 70 to 90 percent for trimethyltin chloride, triethyltin bromide, dimethyltin dichloride, tributyltin iodide, and dibutyltin dichloride; recoveries were approximately 40 percent for butyltin trichloride and diphenyltin dichloride.     

The acute toxicity of tri-n-butyltin taurocholate

The acute toxicity for tri-n-butyltin taurocholate (TBT-TA), a newly synthesized organotin steroid, was determined using Long Evans rats. The organotin compound was suspended in corn oil and administered by gavage using standard techniques. The TBT-TA exhibited a taurocholic acid toxicity at 24 h and a tributyltin toxicity at three days. The LD₅₀ values were 611 and 384 mg kg^?1 respectively. The dead rats exhibited distended stomachs, enlarged cecums, and lesions in the gastrointestinal tract. The toxicity is similar to that observed with other trialkyltin compounds.     

Speciation of Organotin Compounds by Capillary Electrophoresis Coupled with Hydride Generation Atomic Fluorescence Spectrometry

Abstract

Capillary electrophoresis (CE) coupled with hydride generation atomic fluorescence spectrometry (HG‐AFS) was developed for the speciation analysis of organotin compounds. The four organotin cations of trimethyltin (TMT), monobutyltin (MBT), dibutyltin (DBT), and tributyltin (TBT) were completely separated by CE in a 50 cm×75 µm i.d. fused‐silica capillary at 15 kV and using a mixture of 50 mmol l^?1 H₃BO₃?50 mmol l^?1 Tris‐5% v/v methanol (pH 7.10) as electrolyte. 0.008 mmol l^?1 cetyltrimethylammonium bromide (CTAB) added to the electrolyte suppressed the adsorption of the organotin cations on the inner wall of capillary. The generated hydride species were detected on‐line with AFS. The precisions (RSD, n=5) were in the range of 1.7–3.1% for migration time and 3.8–4.7% for peak area response for the four organotin species. The detection limits ranged from 1–10 µmol l^?1 (as Sn).     

Metal binding discrimination of the calmodulin Q41C/K75C mutant on Ca2+ and La3+

Calmodulin (CaM) is a multifunctional Ca²⁺-binding protein regulating the activity of many enzymes in response to fluctuation of the intracellular Ca²⁺ level. It has been shown that a CaM Q41C/K75C mutant (CaMSS) with a disulfide bond in the N-terminal domain exhibits greatly reduced affinity to Ca²⁺. In the present study, the experimental results revealed a unique metal binding pattern in CaMSS towards La³⁺ and Ca²⁺ separately: the mutant protein binds Ca²⁺ at site I, III and IV; however, it binds La³⁺ at site I, II and IV. A putative mechanism was proposed which is the conformation of site II (or site III) of CaMSS could be altered and thus loses its metal ion affinity in response to metal binding in the opposite terminal domain possibly through the long range domain interaction. The present work may offer new perspectives for understanding the mechanisms of specific metal ion affinity in CaM and for CaM-based protein design.     

The use of ESI-MS to probe the binding of divalent cations to calmodulin

Proteins have evolved with distinct sites for binding particular metal ions. This allows metalloproteins to perform a myriad of specialized tasks with conformations tailor-made by the combination of its primary sequence and the effect on this of the ligated metal ion. Here we investigate the selectivity of the calcium trigger protein calmodulin for divalent metal ions. This ubiquitous and highly abundant protein exists in equilibrium between its apo and its holo form wherein four calcium ions are bound. Amongst its many functions, calmodulin modulates the calcium concentration present in cells, but this functional property renders it a target for competition from other metal ions. We study the competition posed by four other divalent cations for the calcium binding sites in calmodulin using electrospray ionization mass spectrometry (ESI-MS). We have chosen two other group II cations Mg²⁺, Sr²⁺, and two heavy metals Cd²⁺, Pb²⁺. The ease with which each of these metals binds to apo and to holo CaM[4Ca] is described. We find that each metal ion has different properties with respect to calmodulin binding and competition with calcium. The order of affinity for apo CaM is Ca²⁺ ≫ Sr²⁺ ∼ Mg²⁺ > Pb²⁺ ∼ Cd²⁺. In the presence of calcium the affinity alters to Pb²⁺ > Ca²⁺ > Cd²⁺ > Sr²⁺ > Mg²⁺. Once complexes have been formed between the metal ions and protein (CaM:[xM]) we investigate whether the structural change which must accompanies calcium ligation to allow target binding takes place for a given CaM:[xM] system. We use a 20 residue target peptide, which forms the CaM binding site within the enzyme neuronal nitric-oxide synthase. Our earlier work (Shirran et al. 2005) [1] has demonstrated the particular selectivity of this system for CaM:4Ca²⁺. We find that along with Ca²⁺ only Pb²⁺ forms complexes of the form CaM:4M²⁺:nNOS. This work demonstrates the affinity for calcium above all other metals, but also warns about the ability of lead to replace calcium with apparent ease.     

Synthesis and characterization of trialkyltin esters of pyridinecarboxylic acids and crystal structure of [nBu3SnO2CC5H4N‐2]∞

Reactions of trialkyltin oxides with 2‐, 3‐, and 4‐pyridinecarboxylic acids in 1:1 stoichiometry yield 10 corressponding trialkyltin esters R₃SnO₂CC₅H₄N. All compounds are characterized by elemental analysis, IR, ¹H, ¹¹³C, and ¹¹⁹Sn NMR. The crystal structure of tributyltin ester of 2‐pyridinecarboxylic acid is determined by single crystal X‐ray diffraction. In this compound, the tin atom is rendered five‐coordinate in a trigonal bipyramidal structure by coordinating with 2‐pyridinecarboxylate group. The resulting structure is a linear polymer containing Sn O bonds (0.2278(5) and 0.2308(6) nm). © 2004 Wiley Periodicals, Inc. Heteroatom Chem 15:524–529, 2004; Published online in Wiley InterScience (www.interscience.wiley.com). DOI 10.1002/hc.20057     

Local factor analysis of rank-deficient reaction systems

A variety of biochemical and physical properties of proteins are regulated by calcium ion (Ca²⁺) binding with varying specificity and affinity. Calcium ion binding can adjust the phospholipid-protein interactions through changing the properties of phospholipid membrane. As an attractive detection technique, whole column imaging detection (WCID) coupled to capillary isoelectric focusing (cIEF) displays several advantages in the study of protein-ligand and protein-protein interactions, including fast and high-efficient separation, high resolution, and simple operation. In this study, a cIEF-WCID method was evaluated for studying the effect of Ca²⁺ binding on protein structural changes and phospholipid-protein interactions. Four proteins with different isoelectirc point (pI), trypsin inhibitor (pI = 4.5), β-lactoglobulin B (pI = 5.2), phosphorylase b (pI = 6.3), and trypsinogen (pI = 9.3), were used for this purpose. The targeted proteins exhibited altered cIEF profiles due to protein conformation changes resulting from the Ca²⁺ binding. The study showed that Ca²⁺ can be buried in the phospholipid membrane, modify the membrane property, and change the phospholipid-protein interactions. The utility of the cIEF-WCID technique demonstrates that the calcium binding plays a crucial role in the protein structural changes and the phospholipid-protein interactions, and elucidates the possible mechanisms involved in calcium-protein binding and calcium bound phospholipid-protein interactions.     

Characterization of the 1st and 2nd EF-hands of NADPH oxidase 5 by fluorescence, isothermal titration calorimetry, and circular dichroism

Background

Superoxide generated by non-phagocytic NADPH oxidases (NOXs) is of growing importance for physiology and pathobiology. The calcium binding domain (CaBD) of NOX5 contains four EF-hands, each binding one calcium ion. To better understand the metal binding properties of the 1^st and 2^nd EF-hands, we characterized the N-terminal half of CaBD (NCaBD) and its calcium-binding knockout mutants.

Results

The isothermal titration calorimetry measurement for NCaBD reveals that the calcium binding of two EF-hands are loosely associated with each other and can be treated as independent binding events. However, the Ca²⁺ binding studies on NCaBD(E31Q) and NCaBD(E63Q) showed their binding constants to be 6.5 × 10⁵ and 5.0 × 10² M^-1 with ??Hs of -14 and -4 kJ/mol, respectively, suggesting that intrinsic calcium binding for the 1^st non-canonical EF-hand is largely enhanced by the binding of Ca²⁺ to the 2^nd canonical EF-hand. The fluorescence quenching and CD spectra support a conformational change upon Ca²⁺ binding, which changes Trp residues toward a more non-polar and exposed environment and also increases its ??-helix secondary structure content. All measurements exclude Mg²⁺-binding in NCaBD.

Conclusions

We demonstrated that the 1^st non-canonical EF-hand of NOX5 has very weak Ca²⁺ binding affinity compared with the 2^nd canonical EF-hand. Both EF-hands interact with each other in a cooperative manner to enhance their Ca²⁺ binding affinity. Our characterization reveals that the two EF-hands in the N-terminal NOX5 are Ca²⁺ specific.

Graphical abstract

     

A Thermodynamic Study on the Binding of Calcium Ion with Myelin Basic Protein

The interaction of myelin basic protein (MBP) from the bovine central nervous system with divalent calcium ion was studied by isothermal titration calorimetry at 27 °C in aqueous solution. The extended solvation model was used to reproduce the enthalpies of Ca²⁺-MBP interaction over the whole range of Ca²⁺ concentrations. The solvation parameters recovered from the solvation model were attributed to the structural change of MBP due to the metal ion interaction. It was found that there is a set of two identical and non-interacting binding sites for Ca²⁺ ions. The association equilibrium constant is 0.021 μmol⋅dm⁻³. The molar enthalpy of binding is ΔH=−15.10 kJ⋅mol⁻¹.     

取代基对系列有机锡单体与MMA共聚活性的影响

本文采用红外光谱技术测定了共聚物的组成,用最小二乘曲线拟合法计算了甲基丙烯酸三甲基锡酯(TMTM),三乙基锡酯(TETM),三丁基锡酯(TBTM),和三苯基锡酯(TPTM)与甲基丙烯酸甲酯(MMA)的共聚合竞聚率,其数值分别为:r_1=1.07,r_2=0.63(TMTM/MMA);0.87,0.62(TETM/MMA);0.62,0.58(TBTM/MMA);0.68,0.60(TPTM/MMA),并计算了各单体的δ和e值,讨论了不同取代基结构对其共聚合相对活性的影响。     

Analysis of ultratrace triorganotin compounds in aquatic organisms by using capillary electrophoresis-inductively coupled plasma mass spectrometry

A microwave-assisted extraction used to extract trace triorganotin from aquatic organisms and a sensitive analytical method for the determination of ultratrace triorganotin (namely trimethyltin, triethyltin, tripropyltin and tributyltin) with capillary electrophoresis-inductively coupled plasma mass spectrometry were firstly described in this study. The extraction method is simple, effective and can be used to extract trace triorganotin in aquatic organisms within several min. The analytical method has a much lower detection limit of 0.2-0.7 ng Sn/mL for triorganotin compounds, and can be used to determine trace triorganotin in aquatic organisms directly without any derivatization and preconcentration. Using above methods, we have successfully determined trimethyltin, triethyltin, tripropyltin and tributyltin in dried Mya arenaria Linnaeus and Corbicula fluminea within 17 min with a recovery of 93-104% and a RSD (relative standard deviation, n = 6) of 2-5%. Our results showed that dried M. arenaria Linnaeus contained an extremely high tributyltin of 5.1 μg Sn/g dried weight, indicating that it may be a good biomarker for the organotin pollution in ocean.     

Unraveling Ultrafast Photoinduced Proton Transfer Dynamics in a Fluorescent Protein Biosensor for Ca2+ Imaging

Imaging Ca²⁺ dynamics in living systems holds great potential to advance neuroscience and cellular biology. G‐GECO1.1 is an intensiometric fluorescent protein Ca²⁺ biosensor with a Thr‐Tyr‐Gly chromophore. The protonated chromophore emits green upon photoexcitation via excited‐state proton transfer (ESPT). Upon Ca²⁺ binding, a significant population of the chromophores becomes deprotonated. It remains elusive how the chromophore structurally evolves prior to and during ESPT, and how it is affected by Ca²⁺. We use femtosecond stimulated Raman spectroscopy to dissect ESPT in both the Ca²⁺‐free and bound states. The protein chromophores exhibit a sub‐200 fs vibrational frequency shift due to coherent small‐scale proton motions. After wavepackets move out of the Franck–Condon region, ESPT gets faster in the Ca²⁺‐bound protein, indicative of the formation of a more hydrophilic environment. These results reveal the governing structure–function relationship of Ca²⁺‐sensing protein biosensors.     

Investigation of calcium-induced, noncovalent association of calmodulin with melittin by electrospray ionization mass spectrometry

Noncovalent association of Ca²⁺-loaded calmodulin with a target peptide melittin was studied by electrospray ionization mass spectrometry (ESI-MS). ESI-MS does not reveal any binding of the apocalmodulin to the melittin. Partial loading of calmodulin with calcium leads to weak association with melittin. Upon binding of two calcium ions to the protein, changes in the conformation of calmodulin occur; these changes are sufficient to promote binding of melittin. Saturation of the protein with Ca²⁺ (a distribution of up to seven calcium ions is detected) induces a large increase of the binding to melittin. The stoichiometry of peptide binding to calmodulin is 1:1.     

Direct Observation of Ca2+‐Induced Calmodulin Conformational Transitions in Intact Xenopus laevis Oocytes by 19F NMR Spectroscopy

The Ca²⁺‐mediated conformational transition of the protein calmodulin (CaM) is essential to a variety of signal transduction pathways. Whether the transition in living cells is similar to that observed in buffer is not known. Here, we report the direct observation by ¹⁹F NMR spectroscopy of the transition of the Ca²⁺‐free and ‐bound forms in Xenopus laevis oocytes at different Ca²⁺ levels. We find that the Ca²⁺‐bound CaM population increased greatly upon binding the target protein myosin light‐chain kinase (MLCK) at the same Ca²⁺ level. Paramagnetic NMR spectroscopy was also exploited for the first time to obtain long‐range structural constraints in cells. Our study shows that ¹⁹F NMR spectroscopy can be used to obtain long‐range structural constraints in living eukaryotic cells and paves the way for quantification of protein binding constants.     

Ca<Superscript>2+</Superscript> binding to complement-type repeat domains 5 and 6 from the low-density lipoprotein receptor-related protein

Background

The binding of ligands to clusters of complement-type repeat (CR)-domains in proteins of the low-density lipoprotein receptor (LDLR) family is dependent on Ca²⁺ ions. One reason for this cation requirement was identified from the crystal structure data for a CR-domain from the prototypic LDLR, which showed the burial of a Ca²⁺ ion as a necessity for correct folding and stabilization of this protein module. Additional Ca²⁺ binding data to other CR-domains from both LDLR and the LDLR-related protein (LRP) have suggested the presence of a conserved Ca²⁺ cage within CR-domains from this family of receptors that function in endocytosis and signalling.

Results

We have previously described the binding of several ligands to a fragment comprising the fifth and the sixth CR-domain (CR56) from LRP, as well as qualitatively described the binding of Ca²⁺ ions to this CR-domain pair. In the present study we have applied the rate dialysis method to measure the affinity for Ca²⁺, and show that CR56 binds 2 Ca²⁺ ions with an average affinity of K_D = 10.6 microM, and there is no indication of additional Ca²⁺ binding sites within this receptor fragment.

Conclusions

Both CR-domains of CR56 bind a single Ca²⁺ ion with an affinity of 10.6 microM within the range of affinities demonstrated for several other CR-domains.

     

UVB Irradiation Enhances TiO2 Nanoparticle‐induced Disruption of Calcium Homeostasis in Human Lens Epithelial Cells

Currently, titanium dioxide nanoparticles (TiO₂ NPs) have been widely used in various applications including cosmetics, food additives and biomedicine. However, there are few reports available using TiO₂ NPs to treat ocular diseases. Posterior capsular opacification (PCO) is the most frequent complication after cataract surgery, which is induced by the proliferation and migration of lens epithelial cells. Thus, inhibiting the proliferation of lens epithelial cells will efficiently reduce the occurrence of PCO. In this study, we investigated the effects of TiO₂ NPs on HLE B‐3 cells with or without ultraviolet B (UVB) irradiation in vitro. We found that TiO₂ NPs can inhibit HLE B‐3 cell growth, cause the elevation of intracellular [Ca²⁺], produce excessive reactive oxygen species (ROS), further reduce Ca²⁺‐ATPase activity and decrease the expression of plasma membrane calcium ATPase 1 (PMCA1), finally disrupt the intracellular calcium homeostasis and induce cell damage. Importantly, UVB irradiation can apparently enhance these effects on HLE B‐3 cells in the presence of TiO₂ NPs. Taken together, the generation of excessive ROS and the disruption of intracellular calcium homeostasis may be both involved in TiO₂ nanoparticle‐induced HLE B‐3 cell damage under UVB irradiation.     

Design and Applications of Small Molecular Probes for Calcium Detection

The physiological significance of calcium ions such as the role in cellular signalling, cell growth, etc. have driven the development of methods to detect and monitor the level of Ca²⁺ ions, both in vivo and in vitro. Although various approaches for the detection of calcium ions have been reported, methods based on small molecular fluorescent probes have unique advantages including small probe size, easy monitoring of detection processes and applicability in biological systems. In this review article, we will discuss the progress in the development of Ca²⁺‐binding fluorescent probes by taking into account the types of chelating groups that have been employed for Ca²⁺ binding.     

Determination of calcium binding sites in gas-phase small peptides by tandem mass spectrometry

Low-energy (LE) and high-energy (HE) collisionally activated decompositions (CAD) of calcium/peptide complexes of the form [M-H+Ca]⁺ and [M+Ca]²⁺ reflect the site of calcium binding in various gas-phase peptides that are models of the calcium binding site III of rabbit skeletal troponin C. The Ca²⁺ binding sites involve an aspartic acid, glutamic acid, and asparagine, which are in the metal-binding loops of calcium-binding proteins. Both fast atom bombardment (FAB) and electrospray ionization (ESI) were used to generate the metal/peptide complexes. When submitted to LE CAD, ESI-produced Ca²⁺/peptide complexes undergo fragmentations that are controlled by Ca²⁺ binding and provide information on the Ca²⁺ binding site. The LE CAD spectra are simple, indicating that Ca²⁺ binding involves specific oxygen ligands including acidic side chains and that only a few low-energy fragmentation channels exist. The HE CAD spectra of FAB-produced Ca²⁺/peptide complexes are more complex, owing to the introduction of high internal energy into the precursor ion. Interactions of the other alkaline-earth metal ions Mg²⁺ and Ba²⁺ with these peptides reveal that the ligand preferences of these metal ions are slightly different than those of Ca²⁺.