Trans-cis isomerization of an azoxybenzene liquid crystal

Trans-cis isomerization was investigated in a room temperature liquid crystal mixture of two azoxybenzene compounds. Experiments were performed on isolated molecules in dilute solutions and on the liquid crystal phase composed of the pure compounds. The absorption spectra of the trans and cis isomers were found to be similar to those of azobenzene compounds, as were the birefringence and order parameter of the nematic liquid crystal phase. The photo-optic properties were also similar in that irradiation by ultraviolet light caused the conversion from trans to cis isomers, while short wavelength visible light incident on these compounds resulted in the conversion from cis to trans isomers. The activation energy for thermal relaxation from the cis to trans isomer in the liquid crystal phase was determined to be (66±7) kJ/mole, which is less than for azobenzene in solution. While a photostationary state in a dilute solution with approximately equal numbers of trans and cis isomers was achieved, the nematic-isotropic transition of the mixture of the pure compounds decreased from 70°C to room temperature with a cis concentration of only about 12%. One unusual finding was that the photostationary concentration of trans and cis isomers due to irradiation with light of a specific visible wavelength depended on the starting concentrations of the two isomers, indicating that there may be a molecular conformation that is not photo-responsive and relaxes only thermally.     

Kinetic aspects of stereoselectivity in hydrogenation of fatty acids

Kinetic peculiarities of stereoselectivity in hydrogenation of fatty acids are discussed. The reaction mechanism should be able to account for independence of the reaction rate on hydrogen pressure and conversion, stereoselectivity on conversion as well as an increase in cis/trans ratio with pressure increase. Various mechanisms advanced in the literature for formation of cis- and trans mono-unsaturated acids and their derivatives are considered, showing behavior contradicting with experiments. A reaction mechanism is proposed, which is consistent with experimental observations.     

Construction and investigation of photo-switch property of azobenzene-bridged pillar[5]arene-based [3]rotaxanes

Series of azobenzene-bridged pillar[5]arene-based [3]rotaxanes with different alkyl chain length of guest molecules were constructed by threading-endcapping method with alkylenetriazole as axile and tetrahydrochromene as endcapping group.The encapsulation of pillar[5]arenes were proved by highresolution mass,¹ H NMR and NOESY spectra.The photo-responsive property were examined by irradiation of the synthesized [3]rotaxanes with 365 nm and blue light LED,which caused trans to cis and cis to trans isomerization,respectively.Irradiation of corresponding model guest compounds without pillar[5]arene encapsulation resulted in near completely trans to cis and cis to trans isomerization,indicating the existence of pillar[5]arenes is the determining factor for the comprised photo isomerization efficiency.     

Ab initio analysis of the conformational changes of the prolyl-proline model peptide

For- -Pro- -Pro-NH₂ is an ab initio model of the prolyl-proline sequence unit present in numerous peptides and proteins. Cis–trans isomerization of the peptide linkage is a crucial step in accessing the active conformation of several proline containing macromolecules.

The present study focuses on the flexibility of the five-membered pyrrolidine ring, which is considered to help other conformational changes as well as cis–trans isomerization. Ring flexibility is characterized by the pseudorotational amplitude, A, and the phase angle, P. Calculations are carried out at the RHF/6-31+G(d) level of theory. The choice of method and level of theory is further supported by single point DFT calculations.

In the course of NMR structure determination of peptides or proteins, proline residues present in the sequences need special attention. Because of the lack of an amide hydrogen, sequential assignment of proline is rather complicated. Furthermore, in solution state, peptide cis–trans isomers are almost always present. Ab initio study on the For- -Pro- -Pro-NH₂ model is a useful tool to discover the structural characteristics of the prolyl-proline sequence unit.     

A novel, versatile synthetic approach to linearly fused tricyclopentanoids via photo-thermal olefin metathesis

Fifteen examples of a new, speedy and general approach to linearly fused tricyclopentanoids bearing the tricyclo[6.3.0.0^2,6]undecane (triquinane) frame of high contemporary interest is delineated. The key concept in our synthetic sequence to triquinanes is the novel photo-thermal olefin metathesis of cheap, abundantly available Diels-Alder adducts of 1,3 cyclopentadienes and p-benzoquinones. Thus photolysis of endo-tricyclo[6.2.1.0^2,7] undeca-4,9-dien-3,6-diones (9a–9j, 13a,b) furnished pentacyclo [5.4.0.0^2,6.0^3,10.0^5,9]undecan-8,11-diones (10a–10j, 14a,b), which on thermal fragmentation of the cyclobutane ring gave cis, syn, cis-tricyclo [6.3.0.0^2,6]undeca-4,9-dien-3,11-diones (11a–11j, 15a,b in just three steps and in exceptionally good yields. A few interesting transformations of the readily available parent bis-enone 11a which indicates its wider uses in syntheses, are described. Finally, a smooth thermal isomerisation of cis, syn, cis-bis-enones to cis, anti, cis-bis-enones is reported, which further enhances the scope and versatility of our synthetic theme.     

Pigment Yellow 101: A showcase for photo-initiated processes in medium-sized molecules

Pigment Yellow 101 (P.Y.101) is a fluorescent yellow pigment which exhibits a surprisingly rich photochemistry of several competing reaction pathways as revealed by recent time-resolved femtosecond experiments. Our elaborate quantum chemical investigations employing density functional theory (DFT) and time-dependent DFT (TDDFT) show that the observed fluorescence competes with excited state intramolecular proton transfer and trans–cis isomerization processes. Moreover, the experimentally observed spectral features of the complicated excited state dynamics can be assigned to stable trans-diol, trans-keto and cis-diol, cis-keto isomers on the ground and excited state surfaces. Still, due to its molecular size P.Y.101 poses a challenge to electronic structure theory and many problems occur in particular with respect to the excited state calculations. Thus, P.Y.101 serves also as an educative example for which TDDFT yields a reasonable vertical electronic spectrum, but fails in the prediction of excited state structures, when standard GGA or hybrid functionals with low fractions of Hartree–Fock exchange are employed. This failure is attributed to the charge-transfer failure of TDDFT.     

Photodynamics of azobenzene in a hindering environment

We have run trajectory surface hopping simulations of the trans → cis photoisomerization of azobenzene, subject to a pulling force. The model mimics two situations: a trans-azobenzene derivative with bulky substituents that may not be easily displaced, and a recent experiment by Gaub’s group [T. Hugel, N.B. Holland, A. Cattani, L. Moroder, M. Seitz, H.E. Gaub, Science 296 (2002) 1103; N.B. Holland, T. Hugel, G. Neuert, A. Cattani-Scholz, C. Renner, D. Oesterhelt, L. Moroder, M. Seitz, H.E. Gaub, Macromolecules 36 (2003) 2015; G. Neuert, T. Hugel, R.R. Netz, H.E. Gaub, Macromolecules 39 (2005) 789], in which a polymer with azobenzene units was stretched in an atomic force microscope. In both cases, the shortening of the azobenzene moiety in going from the trans to the cis form is opposed by a pulling force. Our simulations show that the trans → cis photoconversion is only partially suppressed by considerably large forces (≈500 pN or more). However, the cis isomer reverts to trans in the ground state, with the help of the pulling force and using the vibrational energy that is available in the first 1–2 ps. The lowering of the quantum yields is therefore the combined result of hindering of the excited state process and of the hot ground state back reaction.     

Stereocontrolled synthesis of (RR)- and (RS)-5-hydroxy-2-methylhexanoic acid lactones : Pheromone of the carpenter bee via palladium-catalyzed reactions

(E,Z)-2,4-Hexadiene was transformed to the lactone cis-1 ( 93% cis)(pheromone of the carpenter bee) in a stereospedfic reaction sequence via a Pd-calalyzed 1,4-acetoxychlorination. The same reaction sequence applied to (E,E)-2,4-hexadiene afforded the isomeric lactone trans-1 (91% trans).     

Cyclopropyl carbanions derived from esters of 2-phenylcyclopropylcarboxylic acids: Configurational stability and reaction with electrophiles

The base-catalyzed cis-trans isomerization of cis and trans-alkyl 2-phenylcyclopropylcarboxylates was studied in several aprotic solvents. It was found that contact ion-pain of the derived carbanion lithium salts were configurationally more stable than the solvent-separated ones. Reaction of either the cis or the trans esters with MeI, and the reaction of the cis ester with Ph₂C = O, resulted in the corresponding I-substituted derivatives having cis geometry only. This was explained as due to steric hindrance to elctrophilic attack exerted by the 2-phenyl group in the case of the trans substrate. The trans esters did not react with Ph₂C=O. Inhibition of the trans-to-cis isomerization of the carbanion salt of the trans substrate in presence of Ph₂C=O could lead to this result.     

The manifestation of non-bonded attraction in the physical properties of cis and trans olefins

Non-bonded attraction is suggested to account for a host of differences in the physical properties of cis and trans olefins of the type XHC=CHX. The main predictions are: (i) The cis isomer is more stable than the trans isomer; (ii) The C=C bond is longer and the C-X bonds are shorter for the cis isomer; (iii) The π MO's orbital energies of the two isomers differ such that the trans isomer is a better electron donor and electron acceptor than the cis isomer. Ab initio calculations at the STO-3G and the 4-31G levels in support of the model are presented. The photoelectron spectra of cis and trans difluoro, dichloro and dibromoethylene are discussed, and found to be in accord with our qualitative model.     

A comparative ab initio study of the geometry and force field of thionformic acid with formic and thiolformic acids

The energy and force field for the planar cis and trans conformers of thionformic acid have been calculated using the 4–31 G basis set, augmented by a complete set of d-functions on the sulfur atom, with full geometry optimization. Extensive comparisons are made between the changes in geometry and selected force constants in going from cis- (chain) to the trans- (ring) structures of thionformic, thiolformic and formic acid. These changes are discussed in terms of a hydrogen bonding type of interaction in the O---HS, S---HO and O---HO structural units respectively. Of the thioacid conformers, the trans-thiol is found to be the most stable; the trans-thion and cis-thiol both about 10 kJ mol⁻¹ less stable; and the cis-thion the least stable by about 38 kJ mol⁻¹.     

Reaction of carbethoxycarbene with 2-phenyloxirane and 2-phenyloxetane

Thermal or photochemical decomposition of ethyl diazoacetate in 2-phenyloxirane gave a complex mixture, the analysis of which indicated that the reaction of carbethoxycarbene had proceeded according to the scheme summarized in Fig. 1. The reaction probably involves intermediate formation of an oxygen-ylide (IV), thus accounting for the observed oxygen-transfer and oxetane formation. Copper-catalysed thermal decomposition resulted in a more selective distribution of products, secondary reactions as well as the tar-formation being drastically reduced. The action of other carbenes such as dihalo-, phenyl- and diphenyl-carbene yielded less or no oxygen-transfer products and the formation of oxetane was not observed. In some cases, especially in the reaction of bis(benzene-sulphonyl)carbene, the major product was cyclic dimers of 2-phenyloxirane.

2-Phenyloxetane reacts more selectively with carbethoxycarbene to produce a mixture of cis and trans isomers of 2-carbethoxy-3-phenyltetrahydrofuran in 72–80% yield.     

2005年诺贝尔化学奖成果简介

2005年诺贝尔化学奖授予在烯烃复分解合成转换方面做出重要贡献的3位科学家:Y ves Chauvin,Richard R.Schrock和Robert H.Grubbs.简要介绍了3位获奖者的主要贡献,烯烃复分解反应的分类和催化反应机理,金属卡宾催化剂及烯烃复分解反应的一些应用.另外,介绍了此领域目前研究的主要科学问题.     

Reductions of acetylenes and conjugated diolefins by lithium aluminum hydride

A convenient method is described for the stereospecific reduction of acetylenes by LAH. For example, 2-pentyne, 3-hexyne, 1-phenylpropyne and diphenylethyne in an ether solvent have been reduced to the corresponding trans olefin in high yield 2,4-Hexadiene was reduced in a similar manner to give a mixture of 2- and 3-hexenes. With toluene as the solvent, the main products from acetylenes are the saturated hydrocarbons. Whereas a trans addition of the hydride to the triple bond occurs in ether solvents, it appears that cis addition occurs in toluene.     

Selectivity for the methoxycarbonylation of ethylene versus CO---ethylene copolymerization with catalysts based on C4-bridged bidentate phosphines and phospholes

The C₄-bridged phospholes 11,12-bis(2,3,4,5-tetramethylphospholylmethyl)-9,10-dihydro-9,10-ethano-anthracene (cis, 4a; trans, 4b) and diphosphines 11,12-bis(diphenylphosphinomethyl)-9,10-dihydro-9,10-ethano-anthracene (cis, 5a; trans, 5b) and their corresponding palladium complexes [(P---P)PdCl₂] (6a–d) have been prepared and characterized. Single-crystal X-ray analyses of 6a–d have been undertaken and they reveal that 4a and b and 5a and b coordinate in a bidentate manner forming seven-membered chelate rings with natural bite angles between 98.62 and 100.30°. The palladium-catalyzed carbonylation of ethylene has been studied using 4a and b and 5a and b. Catalyst mixtures generated from 4a and b, palladium acetate and methanesulfonic acid are selective for the copolymerization of ethylene with carbon monoxide, generating low molecular weight polymers. Surprisingly, the activity of catalyst systems based on cis-(4a) is markedly higher than that based on its trans-isomer, 4b. The marked influence of the nature of the four-carbon tether is highlighted by comparative catalyst testing with [{1,4-bis(2,3,4,5-tetramethylphospholyl)butane}Pd(OAc)₂], which rapidly decomposes under the conditions used for copolymerization. In contrast, under identical conditions catalyst mixtures formed from 5a and b show a marked dependence of the selectivity on the stereochemistry of the ethano-anthracene tether, the former generating a low molecular weight copolymer while the latter generate mainly methyl propanoate. Interestingly, polyketone generated from catalysts based on bisphosphole 4a has a markedly higher average molecular weight than that formed using its diphenylphosphino counterpart, 5a.     

Non-metathesis reactions of ruthenium carbene catalysts and their application to the synthesis of nitrogen-containing heterocycles

Non-metathesis reactions of ruthenium carbene catalysts, such as olefin isomerization, hydrogenation, radical reaction, activation of silane, cyclopropanation, epimerization cocyclopropane, [3 + 2] cycloaddition, and cycloisomerization, are summarized. The utility of these reactions was demonstrated by the synthesis of indole using olefin isomerization and subsequent ring-closing metathesis, the synthesis of indoline using cycloisomerization, and the synthesis of the putative structure of fistulosin using cycloisomerization as a key step.     

Time resolved spectroscopy on Pigment Yellow 101 in solid state

The photochemistry of the fluorescent Pigment Yellow 101 (P.Y.101) in the crystalline phase is investigated combining time resolved vibrational and electronic spectroscopy. The experiments reveal a complex reaction dynamics spanning several orders of magnitude in time and including excited state intramolecular proton transfer (ESIPT) from the initial trans-diol conformer. Following photoexcitation and the subsequent wavepacket motion out of the Franck–Condon region two tautomers, an excited trans-diol and trans-keto state are formed. The cis–trans isomerization of the keto form, which was experimentally observed and theoretically confirmed in DFT calculations in studies on P.Y.101 in solution is obstructed in the solid state, consequently the formation of the cis conformer is not directly observed. In addition, a long lived photoproduct with red shifted vibrational frequencies is identified. The life time of this intermediate is determined to be 50 μs, although an unambiguous assignment to a specific molecular configuration cannot be given at present.     

Towards the bio-production of trans-carveol and carvone from limonene: induction after cell growth on limonene and toluene

Rhodococcus opacus PW4 cells were found to produce trans- and cis-carveol and/or carvone as result of limonene metabolism, depending on the type and concentration of the carbon source used for cell growth. In aqueous systems, cells grown on ethanol and toluene only produced trans-carveol, whilst cells grown on limonene and on toluene with a larger head-space available produced both trans-carveol and carvone. In biphasic systems, limonene was converted to trans- and cis-carveol as well as to carvone, regardless of the carbon source used, although carveol and carvone production rates were higher in toluene and limonene grown cells, respectively. A good and stable emulsion was obtained in a magnetically stirred two-phase reactor but both trans-carveol and carvone were produced at low rates: 0.08 and 0.02 nmol/min mg prot, respectively. No cis-carveol was formed. When (−)-carveol was added, carvone production increased 4.7 fold to 0.12 nmol/min mg prot. Using an aerated two-phase reactor, carvone production was enhanced even with cells grown on toluene. The highest trans- and cis-carveol and carvone production rates were attained with cells grown on limonene by continuously supplying limonene to the reactor through the air stream, carvone production reaching 0.58 nmol/min mg prot. The best trans-/cis-carveol ratio (2.26) was observed with cells grown on toluene when limonene was supplied in the gas phase. When 50 mM limonene was added initially, carvone was produced 27.9 and 141.4 times faster than trans-carveol with cells grown on toluene and limonene, respectively.     

X-ray diffraction studies on cis- and trans-4'-cyanobiphenyl-4-yl 3-n-propylcyclobutane-1-carboxylate

X-ray diffraction has been used to study the nematic phases of the cis and trans isomers of an elongated molecule containing the cyclobutane group. It has been shown that these nematic phases consist of a mixture of single molecules and overlapping core dimers. It has been found that increasing the temperature of the cis isomer rapidly reduces the dimer population, whereas increasing the temperature of the trans isomer enhances the dimer population. This provides an explanation of the relatively high clearing temperature of the trans isomer. The different temperature dependences of the dimer population in the cis and trans isomers has been explained by a model involving inversion of the cylobutane group.     

An ab initio potential energy surface for the υ4 vibrational mode of hydrogen peroxide

In this paper, the levels and the torsional microstates of hydrogen peroxide are determined from fully optimized ab initio calculations using a nuclear model in one dimension. Calculations have been performed at the MP2 level with the 6-311 G(2df,2pd), 6-31 1+G(2df,2pd), cc-pVTZ and AUG-cc-pVTZ basis sets including polarization orbitals and diffuse functions. The most stable conformation, calculated with the MP2/AUG-cc-pVTZ approach, is a trans–gauche conformer lying at 67.5° from the trans structure. By using the same level of calculations, the heights of the trans and cis barriers have been determined to be 386.5 and 2643.8 cm⁻¹ in a good agreement with the experimental data. The variational torsional levels split into four components by the tunnelling effect of the barriers. The splitting of the fundamental level caused by the trans barrier has been found to be 11.8683 cm⁻¹, whereas the splitting caused by the cis barrier is insignificant under n=2. Current ab initio energies confirm the experimental assignments and verify the separability of the torsion from the rest of the vibrations. However, the experimental relation of dependence on the torsion of the rotational constants cannot be reproduced in one-dimension and depends on several additional vibrational effects.