Possible factors influencing the separation mechanism of diastereomeric amino acid derivatives obtained from s-triazine type reagents

Diastereomeric derivatives prepared from an amino acid and an amino amide using trichloro s-triazine as a coupling platform are known to produce good chromatographic diastereoselectivity for many amino acid analytes. The chromatographic diastereoselectivity of these derivatives is difficult to rationalize based on the possibility of four possible conformational isomers, which can interconvert by rotation about the C-N bonds between the amino substituents and the triazine ring. The observed diastereoselectivity implicates an unobvious but significant driving force which causes one of several conformations to be favored over the others. Several possibilities are discussed. Intramolecular hydrogen bonding between acid and amide substituents was explored using computer aided molecular modeling. While such hydrogen bonding may be geometrically possible between the amino acid and the amide substituents, it does not explain why derivatives produced from other chiral compounds which are not capable of the same hydrogen bonding interaction nevertheless exhibit substantial diastereoselectivity. Two other more general effects, steric hindrance to solvation and ion pairing, are therefore suggested as possible contributing factors to the chromatographic diastereoselectivity. Based on the conformational equilibrium behavior of related triazine compounds as reported in the literature, either one of these effects could influence the conformation of the diastereomeric derivatives even in the absence of intramolecular hydrogen bonding interactions between the two chiral substituents, and these effects may therefore be a contributing factor for the observed elution order of the diastereomers.     

Efficient, stereoselective synthesis of trans-2,5-disubstituted morpholines

[reaction: see text] Enantio- and diastereoselective syntheses of trans-2,5-disubstituted morpholine derivatives are described. The routes are initiated by the reaction of enantiopure epoxides (2) with amino alcohols (3) and address the problem of regioselective hydroxyl activation-ring closure of the resulting amino diol adducts for (amino alcohol-derived) alkyl substituents of different steric demands.     

Substituent Effects on the Structural Features and Nonlinear Optical Properties of the Organic Alkalide Li+(calix[4]pyrrole)Li−

The effects of substituents on the structure, character, and nonlinear optical (NLO) properties of the organic alkalide Li⁺(calix[4]pyrrole)Li^? were studied by density functional theory. Natural bond orbital analysis and vertical ionization energies reveal that electron‐donating substituents strengthen the alkalide character of Li⁺(calix[4]pyrrole)Li^? and that they are beneficial for a larger first hyperpolarizability (β₀) value. However, electron‐withdrawing substituents have the opposite effect. The dependence of the NLO properties on the number of substituents and their relative position was detected in multisubstituted Li⁺(calix[4]pyrrole)Li^? compounds. For both the amino‐ and methyl‐substituted derivatives, the polarizabilities and the first hyperpolarizabilities increase as more pyrrole β‐H atoms are substituted. Moreover, distribution of the substituents so that they are as far away from each other as possible resulted in an increase in the β₀ value. The new knowledge obtained in this study may provide an effective approach to enhance the NLO responses of alkalides by employing pyrrole derivatives as complexants.     

The facile synthesis of a series of tryptophan derivatives

This study reports a facile method for the synthesis of a variety of 5- and 6-substituted tryptophan derivatives that are difficult to prepare using alternative enzymatic approaches. Acylation of an activated amino acid, derived from serine in situ, is coupled with an enzymatic resolution step to furnish enantiopure analogues bearing a range of electron withdrawing and releasing substituents. Isolation of a dehydroalanine derivative as a by-product from some reactions provides some insights into the likely mechanism of the reaction.     

Derivatization procedures for the detection of beta(2)-agonists by gas chromatographic/mass spectrometric analysis

An evaluation of derivatization procedures for the detection of beta(2)-agonists is presented. The study was performed with the beta(2)-agonists bambuterol, clenbuterol, fenoterol, formoterol, salbutamol, salmeterol and terbutaline. Different derivatizating agents were employed, aiming to obtain derivatives with high selectivity to be used in the gas chromatographic/mass spectrometric analysis of beta(2)-agonists in biological samples. Trimethylsilylation was compared with different agents and the role of some catalysts was evaluated. Acylation, combined trimethylsilylation and acylation, and the formation of cyclic methylboronates were also studied. Sterical hindrance caused by different substituents at the nitrogen atom of the beta-ethanolamine lateral chain of beta(2)-agonist molecules is mainly responsible for differences in the abundances of the derivatives obtained. The use of catalysts produces an increase in the derivatization yield, especially for compounds with low steric hindrance (substituents with primary and secondary carbon atoms). The formation of trimethylsilyl (TMS) ethers is not influenced by structural molecular differences when only hydroxy groups are involved in derivatization. Combined trimethylsilylation and acylation showed that compounds with a secondary carbon atom linked to the nitrogen atom form mainly N-TFA-O-TMS derivatives, with a small amount of N-TMS-O-TMS derivatives. Compounds with tert-butyl substituents at the amino group (bambuterol, salbutamol and terbutaline) formed O-TMS derivatives as the main products, although a limited amount of trifluoroacylation at the nitrogen atom also occurred. Cyclic methylboronates were formed with bambuterol, clenbuterol, formoterol, salbutamol and salmeterol. Owing to hydroxy substituents in unsuitable positions for ring formation, this procedure was not effective for fenoterol and terbutaline. Mass spectra of different derivatives and tentative fragmentation profiles are also shown. For screening purpose (e.g. sports drug testing), derivatization with MSTFA or BSTFA alone is recommended as a comprehensive derivatization technique for beta(2)-agonists owing to minimal by-product formation; formation of cyclic methylboronates can be useful for confirmation purposes. Detection limits were obtained for the TMS and cyclic methylboronate derivatives using the derivatizing reagents MSTFA and trimethylboroxine, respectively. For most of the compounds, lower detection limits were found for the TMS derivatives.     

Nitrogen NMR Shieldings of Some Nitro Derivatives of 2-Amino-4-methylpyridine Systems

High precision ¹⁴N NMR shieldings (chemical shifts), bulk susceptibility corrected, are reported for dilute solutions in pure, dry acetone for a group of nitro derivatives of (N-substituted) 2-amino-4-methylpyridines, with nitro substituents in either positions 5 or 3 or both, where at least some of these should reveal serious steric hindrance between the substituents involved. The nitrogen shieldings as well as the corresponding PM3 optimized geometries show quite clearly that the 5-nitro derivatives are planar or nearly planar, without any significant hindrance to the -conjugation throughout the molecular system concerned, while the 3-nitro derivatives experience deviations from coplanarity of the pyridine ring and the nitro and amino substituents, with concomitant impairment of -conjugation between these moieties. The nitrogen shieldings of the pyridine nitrogen atoms in N-nitramino-2-alkyl-4-methyl 3 (or 5)-nitropyridines indicate that the N-nitramino group acts as a modest donor of -electrons, much weaker with respect to the donor strength of amino, alkylamino, or phenylamino substituents.     

Vibrational and Thermodynamic Properties of 2,2',4,4',6,6'-Hexanitroazobenzene and Its Derivatives: A Density Functional Theory Study

HNAB (2,2′,4,4′,6,6′‐hexanitroazobenzene) and its derivatives have been optimized to obtain their molecular geometries and electronic structures by using density functional theory at the B3LYP/6‐31G* level. Their IR spectra have been computed and assigned by vibrational analysis. The strongest peaks are attributed to the N? O asymmetric stretching of nitro groups. Its central position moves towards higher frequency as the number of nitro groups increases. It is obvious that there is hydrogen‐bonding between amino and nitro groups in amino derivatives. Based on the frequencies scaled by 0.96 and the principle of statistical thermodynamics, the thermodynamic properties have been evaluated, which are linearly related with the temperature, as well as the number of nitro and amino groups, respectively, obviously showing good group additivity. And the thermodynamic functions for the nitro derivatives increase much more than those for the amino derivatives with the increase of the number of substituents. The values of heat of formation (HOF) for the nitro derivatives increase gradually with n, while those of the amino derivatives decrease smoothly with n.     

Selective azetidine and tetrahydropyridine formation via Pd-catalyzed cyclizations of allene-substituted amines and amino acids

[reaction: see text] By choosing the right substituents either highly functionalized unusual four-membered ring amino acids or the isomeric pipecolic acid derivatives are obtained in enantiomerically pure form. Starting material is a linear allene-containing amino acid that has been resolved via biocatalysis.     

Chiral Phosphine Ligands with Amino Acid Moieties

Abstract

Amino acids containing functionalized aromatic substituents are of considerable interest as building blocks for the syntheses and the design of new types of proteins and pharmacologically active compounds. In contrast to amino acids bearing phosphonated phenyl substituents [1], phosphinophenyl derivatives have been reported only very recently[2]. We have been able to synthesize phosphinophenyl amino acids of type 1 or 2 by nucleophilic phosphination [3] of the potassium salts of 2-and 4-fluoro-a-phenylglycine and-alanine with potassium phosphides Ph(R')PK in high yields.     

An ab initio study of substituent effects on the excited states of purine derivatives

Several excited singlet electronic states of purine nucleobases and related derivatives have been calculated using high-level multireference perturbation theory methods. Purine derivatives with one or two amino or carbonyl groups substituted at positions C(2) and/or C(6) of the purine ring have been included in the study. The effect of the substituents on excited-state energies and wave functions is examined. Some trends have been observed, such as the fact that substitution at the C(2) position decreases the energy of the first pi --> pi* state considerably. Although basic qualitative features of the effects can be explained with the simple frontier molecular orbital theory, ab initio calculations are required to describe the effects quantitatively.     

Synthetic Transformations of Higher Terpenoids. 40. Synthesis and Assessment of Analgesic Activity of N-Containing Derivatives of Lambertianic Acid

Chemistry of Natural Compounds - New labdanoid derivatives containing hydrophilic substituents (amino, methylamino) in the C-4 position were synthesized via selective transformations of...     

Tris(2,4,6-trimethoxyphenyl)methyl carbenium ion for charge derivatization of amines and amino acids

Primary and secondary alkyl amines substitute readily one of the para-methoxy substituents of tris(2,4,6-trimethoxyphenyl)methyl carbenium ion. With this rapid process, the preparation of permanently charged positive derivatives of amines, amino acids and small C-protected peptides is achieved. This is utilized here to facilitate the matrix assisted laser desorption ionization-time-of-flight (MALDI-TOF) analysis of these compounds.     

Synthesis and spectroscopic investigations of iron(III) complexes with chlorides and dianionic,symmetrically halogen substituted phthalocyanines as ligands

The synthesis of iron(III) complexes of general formula FeCl(R-pc), where R-pc are dianionic, symmetrically halogen substituted phthalocyanines at the positions 2,9,16,23 or 1,8,15,22, from the corresponding amino substituted derivatives is described (R=Cl, Br, I). The complexes are characterized by UV-visible and infrared spectra, powder X-ray diffraction and magnetic susceptibility measurements. The effect of substituents at the periphery and the basicity of the solvents used on the electronic spectra are discussed. The Q band of the electronic spectra for symmetrically halogen substituted derivatives are redshifted and the substituents at 2,9,16,23- positions are more effective in redshifting the Q bands than those at 1,8,15,22-positions. Depending upon the basicity of the solvents, the ligand-to-metal charge transfer (LMCT) transitions on Q band envelop shift to the higher energy region in the order of pyridine>DMF>DMSO. The infrared absorption signals for C-H and metal-ligand vibrations appear to be sharper for 1,8,15,22 substituted derivatives than for 2,9,16,23 substituted ones.     

A rationally designed pyrrolysyl-tRNA synthetase mutant with a broad substrate spectrum

Together with tRNA(CUA)(Pyl), a rationally designed pyrrolysyl-tRNA synthetase mutant N346A/C348A has been successfully used for the genetic incorporation of a variety of phenylalanine derivatives with large para substituents into superfolder green fluorescent protein at an amber mutation site in Escherichia coli. This discovery greatly expands the genetically encoded noncanonical amino acid inventory and opens the gate for the genetic incorporation of other phenylalanine derivatives using engineered pyrrolysyl-tRNA synthetase-tRNA(CUA)(Pyl) pairs.     

Retro [2 + 2 + 2] ring opening in tricyclobutabenzene derivatives. Thermochemistry and reaction barriers. A theoretical hybrid density functional study

The starting materials, transition states, and products of the concerted retro [2 + 2 + 2] ring-opening reactions of several tricyclobutabenzene derivatives substituted by double-bonded substituents were calculated at the B3LYP/6-31G theoretical level. It was found that the geometries of the products (cyclododecatriyne derivatives) are governed by the electronegativity of the substituents and hyperconjugation effects. The transition-state geometries of all the derivatives are similar. It was found that the retro [2 + 2 + 2] ring-opening reactions are endothermic (ca. 30-85 kcal mol(-1), depending on the substituents) with high barriers, ranging between ca. 95 and 115 kcal mol(-1). It is predicted that the tricyclobutabenzene derivatives under study will be stable when prepared and that they can be made by [2 + 2 + 2] intramolecular ring closure of the respective cyclododecatriyne derivative, especially with the use of transition metals as mediators or catalysts.     

On the capillary gas chromatographic separation of enantiomers of N-trifluoroacetyl-O-alkyl esters of selected amino acids on 2,3-di-O-pentyl-6-O-acyl cyclodextrins

In this work, the separation of enantiomers of N-TFA-O-alkyl amino acids on the 2,3-di-O-pentyl-6-O-acyl alpha-, beta- and gamma-cyclodextrin stationary phases has been studied. The influence of structure differences in the alkyl substituents bonded to the stereogenic carbon atom (R1), as well as in the ester group (R2) of the selected amino acid derivatives, and the selectivity of modified alpha-, beta- and gamma-cyclodextrin phases in gas chromatographic separation of derivatized amino acid enantiomers was studied in detail. A model set of N-TFA-alkyl esters of four amino acids was separated on five columns. The separation of enantiomers was evaluated in terms of the interactions of the alkyl substituents bonded to the stereogenic carbon (R1) and/or the ester group (R2) of the N-TFA-O-alkyl amino acid derivatives as well as the nature of the 3-O-acyl group in the 2,6-di-O-pentyl-3-O-acyl alpha-, beta- and gamma-cyclodextrins. It was shown that the variation in the enantiomeric separation with temperature and the retention order of enantiomers on a given cyclodextrin capillary column depends both on the nature of the bonded R1 and R2 alkyl groups. It was found that the temperature dependencies of selectivity factors, ln alpha on 1/T, were mostly non-linear. The thermodynamic data [delta(deltaS) and [delta(deltaH)] which characterize the chiral recognition were used to gain more insight into the mechanistic aspects of enantio separation of the N-TFA-O-alkyl amino acid derivatives on 2,6-di-O-pentyl-3-O-acyl-alpha-, beta- and gamma-cyclodextrins.     

Studies on the hydrogen bonding of aniline's derivatives by FT-IR

The hydrogen bonding of 23 aniline's derivatives in various solvents and in solid states are studied by Fourier transform infrared spectroscopy. The Infrared absorption of their amino group is greatly influenced by solvents. Compared with those data determined in hexane, the symmetric stretching frequency (nu(s)) and asymmetric stretching frequency (nu(as)) of amino group have an obvious bathochromic shift in benzene, but a relatively smaller shift in CCl4. It is also found that the concentration of these compounds has very little effect on the frequencies, the band shapes and relative absorption intensities of amino group. This indicates that the intermolecular hydrogen bonds are very weak between the aniline's derivatives in the solution. The substituent of methyl (-CH3) has different electronic effects in organic solvents with various polarities. Methyl group behaves as an electron-donating functional group in hexane, however, it shows an electron-withdrawing effect in benzene. When methoxyl (CH3O-) is ortho-substituted, v(as) of amino group increases and nu(s) almost does not change. While methoxyl (CH3O-) is meta-substituted, v(as) of amino group increases, but nu(s) decreases. The groups of chloro- (Cl-) and nitro- (-NO2) cause a hyposochromic shift of the nu(as) and nu(s) of amino group, while substituent of -NH2 makes a bathochromic shift. The solvents influence the relative intensities of nu(as) and nu(s) of amino group more greatly than the substituents do. In solid states, the amino group of aniline's derivatives has more than two absorption bands because of forming the inter- or intra-molecular hydrogen bonds.     

Steric and Electronic Effects, Enantiospecificity, and Reactive Orientation in DNA Binding/Cleaving by Substituted Derivatives of [SalenMn(III)](+)

Twenty-six derivatives of [SalenMn(III)](+) (1) bearing halogen, nitro, amino, ether, alkyl, or aryl substituents on the aromatic rings and/or at the imine positions or containing 1,3-propylene-, 1,2-phenylene-, 1,2-cyclohexane-, or 1,2-diphenylethylenediamine in place of ethylenediamine as the bridging moiety have been synthesized. The DNA binding/cleaving properties of these complexes in the presence of terminal oxidants have been examined using DNA affinity cleaving techniques. Active derivatives produced DNA cleavage from the minor groove at sites containing multiple contiguous A:T base pairs. For aryl-substituted derivatives, DNA cleavage efficiency was found to vary with both the identity and position of attachment of substituents. The precise patterns of cleavage at A:T target sites varied with the position of attachment of substituents, but not with the identity of the substituents. The results suggest that substituents alter specificity through both steric and electronic effects. The 3,3'-difluoro and -dichloro derivatives produced cleavage patterns that match those of the parent complex, suggesting that the activated form of 1 produces cleavage from an orientation in which the concave edge of the complex faces away from the floor of the DNA minor groove. Bridge modifications yield complexes with reduced DNA cleaving activity relative to 1. DNA cleaving efficiency was found to vary with both the structure and stereochemistry of the bridge. Cleavage efficiency for the complex derived from (R,R)-cyclohexanediamine was 5 times greater than that for the (S,S) enantiomer. Cleavage patterns produced by the enantiomeric complexes at A:T rich target sites were different, demonstrating enantiospecific recognition and cleavage of right-handed double-helical DNA.     

Synthesis and Spectroscopy of Novel‐α‐Pyrazolylglycine Derivatives

The synthesis of α‐pyrazolylglycine derivatives(7a‐d) with different substituents, starting from glycine have been pre pared. The spectroscopy of intermediate compounds and the final amino acids have been discussed.     

Recoding the Genetic Code with Selenocysteine

Selenocysteine (Sec) is naturally incorporated into proteins by recoding the stop codon UGA. Sec is not hardwired to UGA, as the Sec insertion machinery was found to be able to site‐specifically incorporate Sec directed by 58 of the 64 codons. For 15 sense codons, complete conversion of the codon meaning from canonical amino acid (AA) to Sec was observed along with a tenfold increase in selenoprotein yield compared to Sec insertion at the three stop codons. This high‐fidelity sense‐codon recoding mechanism was demonstrated for Escherichia coli formate dehydrogenase and recombinant human thioredoxin reductase and confirmed by independent biochemical and biophysical methods. Although Sec insertion at UGA is known to compete against protein termination, it is surprising that the Sec machinery has the ability to outcompete abundant aminoacyl‐tRNAs in decoding sense codons. The findings have implications for the process of translation and the information storage capacity of the biological cell.