A non-charged,easily polarizable,intramolecular, hydrogen bond in 2-(α-pyridyl N-oxide)ethane sulphonic acid

Non-charged intramolecular hydrogen bonds formed in 2-(α-pyridyl N-oxide)ethane sulphonic acid cause strong continuous absorption; thus, these hydrogen bonds are easily polarizable. A double minimum proton potential with a deeper well at the oxygen atom of the NO group is present in these hydrogen bonds.     

Crystal structure of Schiff base derivative of gossypol with 3,6,9-trioxa-decylamine

Crystals of the Schiff base derivative of gossypol with 3,6,9-trioxa-decylamine were examined using X-ray diffraction, FT-IR and CPMAS spectroscopy. The Schiff base crystallizes as a racemate in the space group C2/c with a=24.390(5), b=12.026(2), c=14.810(3) Å, β=102.78(3)°, and Z=4. The results of the FT-IR, and CPMAS study of the crystals are in agreement with the X-ray data. The FT-IR spectrum of the crystals shows that the OH groups at position 1,1′ and 6,6′ as well as the N₁₆-H proton are involved in weak intermolecular and intramolecular hydrogen bonds, respectively. The FTIR and CP-MAS spectral behaviour is in agreement with the crystallographic results demonstrating the existence of the enamine-enamine tautomeric form of the Schiff base studied.     

Formation of intramolecular hydrogen bonds in heterodisubstituted ferrocene diamides with a secondary and a tertiary amido group: X-ray structure of 1′-(N′-butyl-carbamoyl)-morpholino ferrocenecarboxamide

Various unsymmetrically substituted ferrocene 1,1′-diamides have been synthesized via homogeneous catalytic carbonylation starting from 1,1′-diiodoferrocene. The unique features observed in the ¹H NMR and IR spectra of the compounds bearing a secondary and a tertiary amido group are explained by the formation of an internal hydrogen bond between the substituents. Addition of chloride ions (as a tetrabutylammonium salt) into the solutions of these compounds results in spectroscopic changes due to the formation of intermolecular hydrogen bonds between the ferrocene diamide and the anion. The solid state structure of 1′-(N′-butyl-carbamoyl)-morpholino ferrocenecarboxamide (1a) has also been determined by X-ray crystallography. A strong intramolecular H-bond between the NH group of the N′-butyl-carbamoyl moiety and the CO of the tertiary amido group was observed.     

Temperature-dependent polymorphism of N-(4-fluorophenyl)-1,5-dimethyl-1H-imidazole-4-carboxamide 3-oxide: experimental and theoretical studies on intermolecular interactions in the crystal state

X-ray analysis of N-(4-fluorophenyl)-1,5-dimethyl-1H-imidazole-4-carboxamide 3-oxide reveals the temperature-dependent polymorphism associated with the crystallographic symmetry conversion. The observed crystal structure transformation corresponds to a symmetry reduction from I4₁ /a (I) to P4₃ (II) space groups. The phase transition mainly concerns the subtle but clearly noticeable reorganization of molecules in the crystal space, with the structure of individual molecules left almost unchanged. The Hirshfeld surface analysis shows that various intermolecular contacts play an important role in the crystal packing, revealing graphically the differences in spatial arrangements of the molecules in both polymorphs. The N-oxide oxygen atom acts as a formally negatively charged hydrogen bonding acceptor in intramolecular hydrogen bond of N–H…O^? type. The combined crystallographic and theoretical DFT methods demonstrate that the observed intramolecular N-oxide N–H…O hydrogen bond should be classified as a very strong charge-assisted and closed-shell non-covalent interaction.     

A novel hydrogen-bonding N-oxide–sulfonamide–nitro N—H…O synthon determining the architecture of benzenesulfonamide cocrystals

The structures of novel cocrystals of 4-nitropyridine N-oxide with benzenesulfonamide derivatives, namely, 4-nitrobenzenesulfonamide–4-nitropyridine N-oxide (1/1), C₅H₄N₂O₃·C₆H₆N₂O₄S, and 4-chlorobenzenesulfonamide–4-nitropyridine N-oxide (1/1), C₆H₆ClNO₂S·C₅H₄N₂O₃, are stabilized by N—H…O hydrogen bonds, with the sulfonamide group acting as a proton donor. The O atoms of the N-oxide and nitro groups are acceptors in these interactions. The latter is a double acceptor of bifurcated hydrogen bonds. Previous studies on similar crystal structures indicated competition between these functional groups in the formation of hydrogen bonds, with the priority being for the N-oxide group. In contrast, the present X-ray studies indicate the existence of a hydrogen-bonding synthon including N—H…O(N-oxide) and N—H…O(nitro) bridges. We present here a more detailed analysis of the N-oxide–sulfonamide–nitro N—H…O ternary complex with quantum theory computations and the Quantum Theory of Atoms in Molecules (QTAIM) approach. Both interactions are present in the crystals, but the O atom of the N-oxide group is found to be a more effective proton acceptor in hydrogen bonds, with an interaction energy about twice that of the nitro-group O atoms.     

Smectic A liquid crystals from dihydrazide derivatives with lateral intermolecular hydrogen bonding

Six dissymmetrical dihydrazide derivatives, N-(4-alkoxybenzoyl)-N′-(4′-nitrobenzoyl) hydrazine (Cn-NO₂) and N-(4-alkoxybenzoyl)-N′-(4′-biphenyl carbonyl) hydrazine (Cn-Ph), were synthesized and investigated by means of differential scanning calorimetry, polarized optical microscopy and wide angle X-ray diffraction. The compounds exhibit smectic A₁ phase. Based on the results of ¹H NMR and variable temperature FT-IR spectroscopy, lateral intermolecular hydrogen bonding between -CO and -N-H groups was proposed and the effect of hydrogen bonding on the phase transitions was discussed. It was concluded that the combination of lateral intermolecular hydrogen bonding and microphase segregation stabilized the smectic A phase.     

Metal complexes derived from hydrazoneoxime ligands: IV. Molecular and supramolecular structures of some nickel(II) complexes derived from diacetylmonoxime S-benzyldithiocarbazonate

Four new nickel(II) complexes, [{Ni(L)}₂], [NiL · HPyr], [NiL · HIm] and [Ni(HL)₂] · H₂O, derived from diacetylmonoxime-S-benzyldithiocarbazonate (H₂L) have been synthesized and characterized by elemental analyses, field desorption and electrospray ionization mass spectra, UV–Vis, infrared absorption spectra, as well as ¹H NMR spectra. X-ray molecular structures showed that the Ni(II) in both [NiL · HPyr] and [NiL · HIm] are in a distorted square planar environment and is coordinated to the dianionic NNS tridentate hydrazoneoxime ligand via deprotonated oximate nitrogen, hydrazone imine nitrogen, and thiolate sulphur. The fourth coordination sites are occupied, respectively, by the pyrazole and imidazole nitrogens. The oximate O1 of [NiL · HPyr] is involved in intramolecular hydrogen bond with the pyrazole NH proton as well as intermolecular hydrogen bond pyrazole C6H proton, forming a helical chain propagating along the b-axis. The structure is stabilized by a set of π?π and CH?π interactions. The molecular units in [NiL · HIm] are linked together by hydrogen bond formation between the oximate oxygen and imidazole NH proton, giving rise to an infinite zigzag chain extended along the a-axis. The chains are interconnected by π?π and CH?O interactions. In [Ni(HL)₂] · H₂O, the Ni(II) is in a distorted octahedral environment. The two mononegative hydrazoneoxime ligands are coordinated in the meridional configuration where the two thiol sulphur atoms and the two oxime nitrogen atoms are cis to each other, while the imine nitrogen atoms are trans. The oxime proton O2H is involved in a reciprocal bifurcated hydrogen bond formation with both N2 and S3 of the adjacent molecule giving rise to hydrogen bonded dimer. This dimeric structure is further stabilized by a pair of reciprocal CH?O interactions. A one dimensional chain of alternating dimeric unit and water molecule propagating along the c-axis is formed via hydrogen bond formation between the oxime O1 oxygen and the bridged water molecule proton.     

A novel 1:2 cucurbit[8]uril inclusion complex with N-phenylpiperazine hydrochloride

A new 1:2 inclusion complex of cucurbit[8]uril (CB[8]) and protonated N-phenylpiperazine was synthesized and characterized by ¹H NMR and X-ray crystallography. The crystal structure showed that the phenyl rings of the two equivalents of guest encapsulated in the cavity of CB[8] are parallel to one another with a mean plane separation of 3.899 Å. In contrast, the piperazinyl phenyl ammonium moieties slightly protrude from the ureidyl carbonyl lined portals in order to accommodate the ion–dipole interaction between host and guest which provides a substantial driving force for the assembly. The oxygen atoms of the carbonyl groups form hydrogen bonds with the hydrogen atoms in both bridging methylene groups of CB[8] and water molecules. There are also hydrogen bonds formed among CB[8], water, and the protonated piperazinyl rings. These hydrogen bonds are formed between the ureidyl C=O groups and hydrogens in methylenes of piperazinyl rings; through hydrogen bonding N⁺–H···O(H)–H···O=C. The protonated piperazinyl rings connect the carbonyl groups with the bridging water molecules.     

1H NMR studies on intramolecular hydrogen bonding in perchlorates of N-(pyridyl)amides of 6-methylpicolinic acid N-oxide

The ¹H NMR spectra of perchlorates of N-(pyridyl)amides of 6-methylpicolinic acid N-oxide (PYAP) in CD₃CN at 100 MHz show two proton signals belonging to two distinct intramolecular hydrogen bonds. The position of these signals is independent of concentration and temperature. That of the proton of the N? H ?O bond in PYAP is shifted to still lower field than in N-(pyridyl)amides of 6-methylpicolinic acid N-oxide (PYA) due to the inductive effect of the pyridine cation and the formation of another intramolecular hydrogen N⁺? H ?O bond. The proton of the N⁺? H ?O bond interacts strongly with its environment and is highly sensitive to traces of water. Presumably, water leads to dissociation of the intramolecular bond.     

Very short OH?hydrogen bond in l-histidinium difluoride

The crystal structure of C₆H₁₁N₃O₂²⁺·2F²⁻ is reported. The structure contains a fluoride ion strongly H-bonded to a carboxylic O atom, a rare, very strong, hydrogen bond. The donor-acceptor distance is 2.3818(10) Å, the shortest value reported to date, considerably less than the sum of the van der Waals radii of the atoms implicated, as expected from a very strong hydrogen bond. The di-cation has an open conformation. There is an extensive H-bonding network between anions and cations assembling rings on the ac plane and chains in several directions. Two extra intermolecular interactions of the type CH?π are found, exhausting the aromatic π electron system ability to act as a proton acceptor.     

Experimental and theoretical study of N-(2-hydroxyethyl)morpholine betaine

N-(2-hydroxyethyl)morpholine betaine (HEMB) has been characterized by a single crystal X-ray analysis, FTIR spectroscopy and DFT calculations. The crystals are monoclinic, space group P2₁/c with a=10.273(2), b=9.360(2), c=9.447(2) Å and β=104.72(3)Å. Two molecules of HEMB form a centrosymmetric dimer (X2) connected by a pair of hydrogen bonds between the CH₂CH₂OH and COO⁻ groups, with the O?O distance of 2.672(2) Å. The morpholine ring adopts a chair conformation with the CH₂CH₂OH group in the axial and the CH₂COO⁻ group in the equatorial position. The structures of the dimer, B2, and two monomers, B1a and B1b, have been optimized by the B3LYP approach using the 6-31G(d,p) basis set. The computed structure of B2, agrees well with the experimental X2. From two stable monomeric conformers the more favored is B1a, with the intramolecular hydrogen bond with the O-H?O distance of 2.566 Å. The effects of hydrogen bonding and electrostatic interactions on the conformation of the molecules investigated have been discussed. The FTIR spectrum shows a broad absorption in the 3300-2600 cm⁻¹ region, typical of moderate O-H?O hydrogen bonds.     

Synthesis, characterization and crystal structures of new bidentate Schiff base ligand and its vanadium(IV) complex: The catalytic activity of vanadyl complex in epoxidation of alkenes

The Schiff base ligand N-salicylidin-2-bromoethylimine (L) and its vanadium(IV) complex, VOL₂ (1), were synthesized and characterized by using X-ray, CHN, ¹H NMR and FT-IR methods. X-ray analysis shows the Schiff base ligand L acts as a bidentate (O, N) chelating ligand and coordinates via imine nitrogen and phenolato oxygen atoms to the V(IV) center. The coordination geometry around the V(IV) center in 1 is approximately square pyramidal, as indicated by the unequal metal-ligand bond distances and angles, with the basal plane formed by the N₂O₂ donors of the two bidentate Schiff base ligands, the two phenolato O atoms and the two imine N atoms are in the trans position. The coordination sphere of the V(IV) is completed by one oxygen atom in apical position. In the Schiff base ligand, L, there are some classical intramolecular O1-H1?N1 and non-classical intermolecular C9-H9b?O1 hydrogen bonds, while in 1, there are two non-classical intermolecular C7-H7?O3 and C8-H8b?O3 hydrogen bonds. The catalytic activity of 1 in epoxidation of cyclooctene was investigated in different conditions to obtain optimum conditions. The effects of solvent, oxidant, catalyst concentration and alkene/oxidant ratio were studied and the results showed that in CCl₄ in the presence of tert-butylhydroperoxide in 1:3 alkene/oxidant ratio, high epoxide yield was obtained. The epoxidation of alkenes was also carried out in optimized conditions that high catalytic activity and selectivity were obtained.     

Four different types of hydrogen bonds observed in 1,2-bis(N-benzenesulfonylamino)benzenes due to conformational properties of the sulfonamide moiety

The crystal structures of 1,2-bis(N-benzenesulfonylamino)benzenes with secondary and/or tertiary sulfonamide groups were determined by X-ray crystallographic analysis. Every Ar-sulfonamide group existed in synclinal conformation in the crystals even though it was secondary or tertiary. Each compound showed different types of hydrogen bonds in the crystal structure. 1,2-Bis(N-benzenesulfonylamino)benzene (1) formed two double hydrogen bonds connected to the next molecules, 1-(N-benzenesulfonylamino)-2-(N-benzenesulfonyl-N-methylamino)benzene (2) contained double hydrogen bond involved by both the sulfonamide moieties, 1,2-bis(N-4-toluenesulfonylamino)benzene (3) had both intra- and intermolecular hydrogen bonds, and 1-(N-methyl-N-4-toluenesulfonylamino)-2-(N-4-toluenesulfonylamino)benzene (4) had one double hydrogen bond involved by only one sulfonamide moiety. Sulfonamides 1 and 3 formed infinite arrays of the molecules, and sulfonamides 2 and 4 formed racemic dimer of their conformational enantiomers via the hydrogen bonds.     

Intramolecular easily polarizable charged and non-charged hydrogen bonds: IR continua and hydrogen bond length

Substances with intramolecular, easily polarizable hydrogen bonds of different length are compared. Long hydrogen bonds cause IR continua which show band-like structures in the region 2800–1800 cm^?1, extending with weaker intensity toward smaller wave-numbers over the whole region studied. Medium length bonds cause continua beginning at 3200 cm^?1 and extending over the whole region studied. Very short, easily polarizable hydrogen bonds, such as the bond in the HAuCl₄ salt of NN'-tetramethyl-o-xylildiamine di-N-oxide, cause continua with very great intensity in the region 1500–850 cm^?1. Comparison of the experimental with calculated continua shows very good agreement with regard to wavenumber regions in which easily polarizable hydrogen bonds of different length cause IR continua.By comparing all these intramolecular, easily polarizable hydrogen bonds causing IR continua it is shown that the charge of the hydrogen bonds is not the decisive property for the occurrence of the continua but rather the shape of the proton potentials. Continua may occur only with hydrogen bonds with double minima or broad flat proton potential.     

Molecular structure and spectroscopic properties of N-methylmorpholine betaine complex with 4-hydroxybenzoic acid

Crystal structure of the 1:1 complex of N-methylmorpholine betaine (MMB) with 4-hydroxybenzoic acid (4-HBA) has been determined by X-ray diffraction. Crystals are orthorhombic, space group Pna2₁ with a=7.933(2), b=15.336(3), and Z=4, R=0.033. The acid molecule forms two O-H?O hydrogen bonds with two betaine molecules. The COOH group of the acid forms shorter hydrogen bond with betaine (2.587(2) Å), than the hydroxyl group (2.677(2) Å). The carbonyl oxygen atom of the acid also interacts with the methylene hydrogen atom of the betaine through C-H?O hydrogen bond (3.256(2) Å). Thus formed infinite chains parallel to the z axis are connected by other C-H?O hydrogen bonds into layers perpendicular to the x axis. The morpholine ring has a chair conformation with the methyl group in the equatorial position and CH₂COO⁻ group in the axial one. The powder FTIR and Raman spectra and semiempirical calculations of the isolated molecule confirm the structure of the complex investigated. The ¹H and ¹³C spectra indicate that in DMSO-d₆ solution, protons are not transferred from the acid to the betaine molecules.     

Synthesis of cyclic mono- and bis-disulfides and their selective conversion to mono- and bis-thiosulfinates

Twelve-membered ring pseudopeptidic cyclic disulfides have been prepared by iodine oxidation of the parent dithiols. However, oxidation of N,N′-(1,2-phenylene)bis(2-mercapto-2-methylpropanamide) afforded a 25/75 mixture of cyclic mono- and bis-disulfides that were separated by selective precipitation in CHCl₃. The cyclic bis-disulfide was selectively prepared by iodine oxidation of the Ni complex of this dithiol and crystallized. Its crystal structure was solved by X-ray diffraction. All these cyclic mono- or bis-disulfides were selectively converted to cyclic mono- and bis-thiosulfinates upon stoichiometric oxidation with dimethyldioxirane at low temperature. ¹H NMR of the cyclic bis-thiosulfinate revealed the presence of four isomers, two couples of stereoisomers, as expected from the insertion of two oxygen atoms in this compound, one on each disulfide bond. The two couples of cis/trans isomers were separated by preparative TLC and identified after alkaline cleavage of the two S(O)-S bonds and metalation with Ni(II). As HO⁻ attack is selective for the sulfinyl sulfur, the nature of the Ni complexes obtained is a signature of each couple of stereoisomers.     

Low-Barrier Hydrogen Bonds in Negative Thermal Expansion Material H3[Co(CN)6]

The covalent nature of the low-barrier N−H−N hydrogen bonds in the negative thermal expansion material H₃[Co(CN)₆] has been established by using a combination of X-ray and neutron diffraction electron density analysis and theoretical calculations. This finding explains why negative thermal expansion can occur in a material not commonly considered to be built from rigid linkers. The pertinent hydrogen atom is located symmetrically between two nitrogen atoms in a double-well potential with hydrogen above the barrier for proton transfer, thus forming a low-barrier hydrogen bond. Hydrogen is covalently bonded to the two nitrogen atoms, which is the first experimentally confirmed covalent hydrogen bond in a network structure. Source function calculations established that the present N−H−N hydrogen bond follows the trends observed for negatively charge-assisted hydrogen bonds and low-barrier hydrogen bonds previously established for O−H−O hydrogen bonds. The bonding between the cobalt and cyanide ligands was found to be a typical donor–acceptor bond involving a high-field ligand and a transition metal in a low-spin configuration.     

Isolation, X-ray structure and properties of an unusual pentacarbonyl(2,2′-pyridyl-quinoxaline) tungsten complex

The first example of a monodentate complexation of 2-(2′-pyridyl)quinoxaline (pq) to a metal centre through N₄ is reported. Photochemical exchange of the THF ligand in W(CO)₅THF by pq yields W(CO)₅(N₄-pq) (1), where the potentially bidentate pq ligand coordinates in an unusual monodentate fashion. Complex 1 is isolated as orange crystals and fully characterized on the basis of NMR, IR, UV-Vis and emission spectroscopy. The structure of 1 was determined by X-ray analysis. W(CO)₅(N₄-pq) (1) crystallizes in space group P2_1/n, monoclinic crystal system with α = 7.0237(5) Å, b = 10.4618(8) Å, c = 23.7768(18) Å, Z = 4 and V = 1731.9(2) Å³. Complex 1 exhibits intramolecular CH?N and intermolecular CH?O hydrogen bonds between the CH groups and nitrogen atoms of quinoxaline and CH groups and oxygen atoms of carbonyls, respectively, resulting in a supramolecular architecture in solid state. The preference to N₄ as coordination site is discussed in terms of electronic interactions. Solutions of 1 emits dually at 77 K while they are moderately instable at room temperature, as 1 undergoes chelation via a first-order kinetic process to form W(CO)₄pq (2). The determined reaction rate of 1 in toluene is 2.3 × 10⁻⁵ s⁻¹ (at 298 K) and is compared with literature values for other W(CO)₅L (L:diimine) complexes.     

Hydrogen bonded NHO chains formed by chloranilic acid (CLA) with 4,4′-di-t-butyl-2,2′-bipyridyl (dtBBP) in the solid state

In crystalline state 2,5-dichloro-3,6-dihydroxy-p-benzoquinone (chloranilic acid, CLA) forms with 4,4′-di-t-butyl-2,2′-bipyridyl (dtBBP) the hydrogen bonded chains along the b-axis. From one side of the CLA molecule the proton transfer takes place and the hydrogen bond length is very short (2.615 Å). A continuous infrared absorption is observed for dtBBP·CLA in the wavenumber range between 3100 and 800 cm⁻¹ also indicating the strong hydrogen bonds. The DSC measurements show a weak, close to continuous, phase transition at 414 K. The complex dielectric permittivity for a single crystal sample was measured in the temperature range 100-440 K and at frequencies between 200 Hz and 2 MHz. The dielectric response is a combination of semiconducting properties and a relaxation process most probably connected with the proton dynamics in the hydrogen bonds. The mechanism of the structural phase transition is discussed.     

Intermolecular-medium and intramolecular-weak hydrogen bonding chains in the crystals of chiral trifluoromethylated amino alcohols

A structural feature of hydrogen bonding chains found in the crystals of trifluoromethylated amino alcohols is reported. Hydrogen bondings of 3-(N,N-dialkylamino)-1,1,1-trifluoro-2-propanols construct chiral spiral hydrogen bonding chains. Lone pairs on the nitrogen atoms of the amino alcohols participate in two hydrogen bondings. Detailed structural analysis of the hydrogen bonds of the 3-(N,N-dimethylamino)-1,1,1-trifluoro-2-propanol suggested that the chain built up with alternating intermolecular-medium and intramolecular-weak hydrogen bonds. The medium intermolecular hydrogen bond, which transfers a proton from the hydroxy group to the amino nitrogen, would make a tentative zwitterionic form of the molecule. Then, electrostatic attraction between the charges in the zwitterion centers induced a weak intramolecular hydrogen bond.