Synthesis and structural properties of a 1-D copper(I) coordination polymer

A coordination polymer catena-chloro(4-pyridinecarboxylic acid)copper(I): [Cu(C₆H₅ O₂N)Cl]_n (1) has been prepared directly by reacting Cu^IICl₂ 2H₂O and 4-cyanopyridine in the presence of disodium maleate under hydrothermal conditions at 140°C. Crystal data for 1 are as follows: monoclinic, P2₁/n, a = 16.4623(9) Å, b = 3.7795(2) Å, c = 24.7612(11) Å, = 101.534(1)°, V = 1509.5(1) ų, Z = 4, D _calc. = 1.955 g cm^–3, R1 = 0.0511, wR2 = 0.1060 for all 2666 reflections. In this 1-D stair-polymer, two [Cu–Cl–Cu]_n zigzag chains are held together by weak interchain Cu–Cl bonds. The 4-pyridinecarboxylic acid ligands derived from the 4-CNpy molecules coordinate to the approximately tetrahedral Cu(I) centers through pyridyl-N atoms. The carboxyl ends of 4-pyridinecarboxylic acid participate in interchain hydrogen-bonding interactions to form a 2-D supramolecular network.     

Crystal and molecular structure of [Cu2(3,5-dihydroxybenzoate)4 (acetonitrile)2] ⋅ 8H2O

The crystal and molecular structure of the title compound, [Cu₂(3,5-dihydroxybenzoate)₄ (acetonitrile)₂] 8H₂O 1, is reported. Crystal data for 1: tetragonal, space group I 4/m, a = 11.720(2) Å, c = 15.304(3) Å, V = 2102.4(6), and D _c = 1.53 g/cm³, for Z = 2. The metal and organic components crystallize to form a Cu paddle-wheel complex, of idealized D_4h symmetry, that assembles in the solid-state, along with eight equivalents of water, to form a 3D hydrogen-bonded network held together by O–H O hydrogens bonds. The metal complexes pack to form a 2D layered structure.     

Hydrogen-bond networks in the mono- and diprotonated cyclic diamine [9]aneN2S

The hydrogen-bond networks in the mono- and diprotonated cyclic diamine, 1-thia-4,7-diazacyclononane, [9]aneN₂S, have been examined. Crystals of the monoprotonated, form [9]aneN₂S HCl, contain a ribbon-like network of alternating strong and weak intermolecular N H Cl hydrogen bonds and weak intramolecular N H N hydrogen bonds. Crystal data for [9]aneN₂S HCl: monoclinic, a = 6.6640(6) Å, b = 10.3493(9) Å, c = 6.9807(6) Å, = 108.847(1)°, V = 455.63(7) ų, space group P2₁, Z = 2. In the di-protonated form, [9]aneN₂S 2HBr, the ribbon-like network comprises strong intermolecular and weak intramolecular N H Br hydrogen bonds. Crystal data for [9]aneN₂S 2HBr: orthorhombic, a = 12.5918(13) Å, b = 8.0753(9) Å, c = 10.6856(11) Å, V = 1086.5(2) ų, space group Pnma, Z = 4. The chloride anions of [9]aneN₂S HCl align in interlocking columns in the a- and c-direction whereas the bromide anions in [9]aneN₂S 2HBr occupy channels in the b-direction.     

Structural characterization of Elisabatin B and Elisabatin C

X-ray structures of Elisabatin B (1) and Elisabatin C (2) have been determined. Crystal data for 1: Triclinic, P (No. 2), a = 7.528(2) Å, b = 9.404(2) Å, c = 11.414(2) Å, = 75.363(3)°, = 86.668(4)°, = 89.683(4)°, and Z = 2. Crystal data for 2: Monoclinic, P2₁/c (No. 14), a = 8.242(2) Å, b = 14.870(2) Å, c = 13.060(2) Å, = 101.458(3)°, and Z = 4. Both compounds are highly unsaturated leading to extended aromatic conjugation. They show different intermolecular O–HO hydrogen bonds, via which 1 forms dimers, and 2 zig-zag polymeric chains.     

Crystal structures of two substituted key intermediates of phenothiazine derivatives

The key intermediates, in the synthesis of phenothiazines, 5-hydroxy-5-methyl 3(phenyl) 2,4-N-dimethylcarbamoyl cyclohexanone, C₁₇H₂₂O₄N₂ (I), and 5-hydroxy-5-methyl 3(2-methylphenyl) 2,4-N-dimethylcarbamoyl cyclohexanone, C₁₈H₂₄O₄N₂ (II), contain essentially substituted cyclohexanone rings in chair conformation with approximately perpendicular oriented phenyl rings. The carbamoyl groups are aligned in opposite directions to facilitate the formation of intramolecular C–HO interaction and O–HO hydrogen bonding. The molecules are linked in helical fashion by an N–HO type intermolecular hydrogen bonding framework. Crystal data: [I], orthorhombic, space group Pbca, a = 9.278(1), b = 19.094(2), c = 19.802(2) Å, V = 3508.0(6) ų, Z = 8 and d = 1.206 Mg m^–3, R = 0.074 (wR = 0.137) for 208 parameters and 1190 observed reflections with I 2 (I); [II], monoclinic, space group P2₁/n, a = 10.523(1), b = 9.005(1), c = 19.771(2) Å, = 94.96(6)°, V = 1866.5(3) ų, Z = 4 and d = 1.183 Mg m^–3, R = 0.062 (wR = 0.131) for 217 parameters and 2276 observed reflections with I 2 (I).     

Synthesis and structure of [(nitrito-O,O′) bis(di-2-pyridylamine)copper(II)] nitrite

The synthesis and molecular structure of the title compound, [(nitrito-O,O) (dpa)₂Cu(II)] (NO₂), 1, is reported. Compound 1 crystallized in the orthorhombic space group Pccn with a = 11.397(5) Å, b = 12.256(6) Å, c = 14.876(8) Å, and V = 2077.9(17) ų with Z = 4. The distorted octahedral copper(II) cations are linked through a hydrogen-bonded polymer network. The polymer network is formed through the amine N–H of the cations and hydrogen bonded to the N–HO nitrite anions.     

2-[(trifluoroacetyl)amino]benzoquinone and the hydrochloride and perchlorate salts of 2-aminohydroquinone

Hydrogen bonding parameters for the title materials are reported. 2-[(trifluoroacetyl)amino]benzoquinone crystallizes in the monoclinic space group P2 ₁/c, with a = 18.195(4), b = 5.110(1), c = 9.635(2), = 104.22(3)°, V = 868.4(3) ų, and Z = 4. This compound exhibits two weak intramolecular hydrogen bonds. The first is between a hydrogen atom of the quinone ring and the carbonyl oxygen of the trifluoroacetamide group; it has a distance of 2.24 Å and a C—HsO angle of 122°. The second is between the hydrogen atom of the trifluoroacetamide group and a quinone carbonyl group; it has a distance of 2.26 Å and a N—HsO angle of 107°. 2-Aminohydroquinone hydrochloride crystallizes in the orthorhombic space group Pca2₁, with a = 16.220(3), b = 5.211(1), c = 8.719(2), V = 737.0(2) ų, and Z = 4. 2-Aminohydroquinone perchlorate crystallizes in the orthorhombic space group P2₁2₁2₁, with a = 7.110(1), b = 7.139(1), c = 18.043(4), V = 915.8(3) ų, and Z = 4. All active hydrogens of the two salts exhibit intermolecular hydrogen bonds that serve to organize a three-dimensional framework for each case.     

Synthesis and crystal structure of a new two-dimensional chromium(III) network through hydrogen bonds

A new chromium(III) complex, [Cr(ox)(bdmpza)(H₂O)], (ox = oxalate dianion and bdmpza = bis(3,5-dimethylpyrazol-1-yl)acetate, respectively), has been synthesized and characterized by X-ray crystallography. This compound crystallizes in the monoclinic space group P2₁/c, with a = 7.008(3) Å, b = 14.229(5) Å, c = 16.497(7) Å, = 101.588(7)°, V = 1611.5(11) ų, Z = 4. The chromium atom has a distorted octahedral environment with different coordination atoms. Bis(3,5-dimethylpyrazol-1-yl)acetate anion is a tridentate ligand, and the oxalate group acts as a chelating bidentate ligand. This compound also forms an infinite two-dimensional network through O–H O hydrogen bonds. The lengths of the hydrogen bonds are 2.765(5) and 2.733(5) Å, respectively.     

Structure of bis(2-amino-5-methylpyridinium) tetrachlorozincate at 298 and 150 K

Reaction of 2-amino-5-methylpyridine with zinc chloride and HCl in aqueous solution yields bis(2-amino-5-methylpyridinium) tetrachlorozincate. The complex crystallizes in the monoclinic space group P2₁/c, with minimal tetrahedral distortion of the ZnCl₄ ^2– ion at both 298 and 150 K; at 298 K, a = 8.090(2) Å, b = 14.795(6) Å, c = 15.850(4) Å, = 101.93 (2); at 150 K, a = 8.0986(2) Å, b = 14.7190(5) Å, c = 15.7684(7) Å, = 102.862(2). The anisotropic cell contraction results in significant changes in nonbonding Cl Cl contacts.     

Influence of CH ⋅ ⋅ ⋅ O interactions on the structure of a pseudorotaxane based on an Hg(II) complex of 18-crown-6

The X-ray crystal structure of [Hg(NO₃)₂(18-crown-6)] (1) prepared from mercury(II) acetate and 18-crown-6 in nitric acid is reported. Crystals are monoclinic, space group P2₁/c with a = 8.3063(17) Å, b = 14.331(3) Å, c = 8.0030(16) Å, and = 99.528(3)°. In contrast to the usual perpendicular arrangement of the crown ether macrocycle mean plane and X–Hg–X in other Hg(II) crown ether complexes and related species, compound 1 shows a marked inclination as a result of a CH    O interactions.     

Molecular and crystal structure of two nickel(II) 1,2-dithiooxalato-S,S′ complexes using 1-(Rbenzyl)pyridinium cation (R = 4′-bromo-2′-fluoro or 4′-bromo)

[BrFPy]₂[Ni(dto)₂] (1) and [BrPy]₂[Ni(dto)₂] (2) complexes have been prepared by reaction of Na₂[Ni(S₂C₂O₂)₂] and the corresponding 1-(Rbenzyl)pyridinium bromide salt (R₁ = 4-bromo-2-fluoro, R₂ = 4-bromo). The crystallographic data for 1: monoclinic P2₁/c, a = 14.2192(1) Å, b = 14.2533(4) Å, c = 15.6535(3) Å, = 96.463(1)°, V = 3152.34(11) ų, Z = 4. Two cations, [Br₁F₁Py]⁺ and [Br₂F₂Py]⁺, both adopt a conformation where both the aromatic rings are twisted to the corresponding N(1)–C(10)–C(11) or N(2)–C(22)–C(23) reference plane. Data for 2: triclinic , a = 9.4042(3) Å, b = 9.6814(4) Å, c = 10.3357(4) Å, = 80.155(1)°, = 65.245(1)°, = 64.259(1)°, V = 769.68(5) ų, Z = 1. The [Ni(dto)₂]^2– anion exhibits a quasi-planar structure in both complexes. An extensive hydrogen bond network of C–H O is clearly observed in 1 and 2, and two complexes show similar crystal packing.     

Synthesis and X-ray structure analysis of 2-acetylamino-benzoic acid

The title compound crystallizes in the orthorhombic space group Fdd2 with unit cell parameters a = 10.848(1) Å, b = 30.264(1) Å and c = 10.577(1) Å, V = 3472.47(2) ų, and Z = 4. The final reliability index is 0.030 for 700 observed reflections. Nitrogen of the amide group and carbon atom of the acid group deviate significantly below and above the plane of the phenyl ring. The crystal cohesion is accentuated by N—HO and O—HO hydrogen bonds.     

Crystal structure and conformation of Linomide [N-methyl-N-phenyl-1,2-dihydro-4-hydroxy-1-methyl-2-oxo-quinoline-3-carboxamide]: A novel immunomodulator

Linomide [N-methyl-N-phenyl-1,2-dihydro-4-hydroxy-1-methyl-2-oxo-quinoline-3-carboxamide] is a new immunomodulator from Phamacia Laboratories, Helsingborg, Sweden. Linomide (LS-2616) has delayed hypersensitivity in rat skin, potentiates mouse natural killer cell activity, and stimulates polyclonal T-cell activation. It has been shown that LS-2616 abolishes the effects of continuous cyclosporine treatment in experimental models. Crystal structure of LS-2616 has been undertaken as a first step in the establishment of a possible structure–function relationship for the drug. Crystals of LS-2616 (C₁₈H₁₆N₂O₃) obtained from methylene chloride are monoclinic, of space group P2₁/a with the following crystallographic parameters: a = 8.793(1) Å, b = 22.349(3) Å, c = 7.808(1) Å, = 92.96(1)°, V = 1532.3(6) ų, _obs = 1.34 Mg/m³, _calc = 1.337 Mg/m³, and Z = 4. The structure was solved with CAD-4 data using MULTAN programs and refined to a final R value of 0.041. The N-methyl carboxamide is in the cis configuration and is turned away from the quinoline ring by 87°. FK506 is a novel 23-membered macrolide lactone which is currently used for bone marrow and organ transplantations. The crystal structure of FK506 has been published. The absolute configuration of FK506 was established as a cis-amide which contains a L-pipecolic acid moiety. Preliminary modeling studies of FK506 with LS-2616 revealed that this cis conformation for the N-methyl carboxamide leads to a lower binding energy than the corresponding trans conformation. The plane of the phenyl group is inclined by 95° to the carboxamide plane. The molecule has the familiar herring-bone type of packing, characteristic of the polyphenyl molecules, stabilized by O–H O and C–H O hydrogen bonds involving the hydroxyl group and the ketone substituents on the quinoline ring and the N-methyl group of the carboxamide.     

Self-assembly of copper(II) tetraaza macrocyclic complex with cyclohexane-1,3-dicarboxylic acid-5-monocarboxylate linked by hydrogen bond

A novel complex with the composition {[Cu(L)](Cl)(H,H-cdc)(H₂O)} _n (1) (L = 3,14-dimethyl-2,6,13,17-tetraazatricyclo[14,4,0^1.18,0^7.12]docosane; H,H-cdc = cyclohexane-1,3-dicarboxylic acid-5-monocarboxylate) has been synthesized and structurally characterized by X-ray diffraction method. It crystallizes in the monoclinic system P2₁/n with a = 9.507(9), b = 12.624(3), c = 26.922(4) Å, = 96.79(1)°, V = 3208(3) ų, Z = 4. The complex contains a 1D hydrogen-bonded polymeric chain with copper(II) macrocycle and bridging H,H-cdc ligand. The copper(II) coordination geometry is best described as a square-plane with four Cu–N bonds. The weak interaction between copper(II) ion and the chloride ion is also found.     

Crystal structure of the molecular adduct of 5-mono[(4-nitrophenyl)azo]-25,26,27,28-tetrahydroxycalix[4]arene with chloroform (1:1)

The crystal structure of the molecular adduct of 5-mono[(4-nitrophenyl)azo]-25,26,27,28-tetrahydroxycalix[4]arene (2) with chloroform (C₃₄H₂₇N₃O₆ CHCl₃) was determined by X-ray crystallographic analysis. It was found to possess a monoclinic space group P2(1)/n, with a = 15.9306(13) Å, b = 10.6293(9) Å, c = 20.3194(17) Å, = 110.480(2)° and D_calc = 1.428 Mg/m³ for _Z = 4. Crystal data indicated that the calix[4]arene moiety of 2 exists in a distorted-cone conformation with intramolecular hydrogen bonds.     

Synthesis and crystal structure of Bi(mpo)3 (Hmpo = 2-mercaptopyridine N-oxide)

The synthesis as well as crystal and molecular structure of [Bi(C₅H₄NOS)₃] are reported. The complex crystallizes in the monoclinic system, space group P2₁/n with lattice parameters a = 9.6521(3) Å, b = 10.0659(4) Å, c = 18.4484(7) Å, = 102.13(6)°, and D _calc = 2.227 Mg · m^–3 for Z = 4. It is clear from the packing diagram that the title compound is a dimer via the secondary coordination. Surrounding Bi atom, three five-membered ring planes (Bi,O,N,C,S) make a dihedral angle of 55.91, 54.72, and 26.13° respectively. The whole crystal presents a three-dimensional network structure as each molecule produces four weak C–H O hydrogen bonds and a weak C–H S hydrogen bond.     

K2.6Nb11.6O30: a novel tetragonal bronze structure

K_2.6Nb_11.6O₃₀, Mr = 1659.33 g mol^–1, crystallizes in the tetragonal system, space group P4/mbm, Z = 1. The lattice parameters are a = 12.549(3) Å, c = 3.978(2) Å, V = 626.4(4) ų, D _x _{x} = 4.398 g cm^–3. The crystal structure was solved and refined from 413 independent reflections, obtained by X-ray diffraction on a single crystal. The final R index and weighted R _w index are 0.0500 and 0.1178, respectively. The three-dimensional network of K_2.6Nb_11.6O₃₀ is similar to that of tetragonal tungsten bronze with K and Nb partially occupying the interstitial pentagonal and trigonal sites. The most interest of this structure is the planar pentagonal coordination of Nb atoms.     

The crystal structure of 5-amino-2-nitrobenzoic acid

The crystal structure of 5-amino-2-nitrobenzoic acid (5A2NB) was determined by the X-ray diffraction method. The 5-amino-2-nitrobenzoic acid crystallizes in the monoclinic P2₁/c space group with a = 3.898(2) Å, b = 13.531(3) Å, c = 14.301(3) Å, and = 90.83(3)°. The adjacent molecules form a cyclic dimmer by intermolecular hydrogen bonds of type O—HsO with their carboxyl groups. In the crystal structure NH₂ group forms a three-center hydrogen bond with oxygen atoms of NO₂ group. The IR spectrum and thermal properties of acid are discussed.     

Crystal structure and characterization of 1,2-N,N-disallicydene-phenylamineato nickel(II) complex

A new complex has been synthesized and characterized by elemental analysis, IR, TGA, and single-crystal X-ray analysis. The crystal is orthorhombic and the space group is chiral (P2₁2₁2₁) with a = 6.620(3) Å, b = 17.300(4) Å,, c = 5.450(1) Å,, = 90°, = 90°, = 90°, z = 4. In the crystal lattice, the molecules create a two-dimensional network structure through hydrogen bonds. The C–HO intermolecular hydrogen bonds connect the title complex to form a supermolecular structure.     

Hydrogen bonding in labdane diterpenoids, labda-7,12(E),14-triene-17-oic acid and labda-12(Z),14,17-triene-18-oic acid

Two labdane diterpenoids, labda-7,12(E),14-triene-17-oic acid (1) and labda-12(Z),14,17-triene-18-oic acid (2), C₂₀H₃₀O₂, have been isolated from Croton oblongifolius. Both 1 and 2 crystallized in the monoclinic system, space group C2, with cell dimensions of a = 21.912(1) Å, b = 7.4002(4) Å, c = 11.5079(7) Å, = 101.999(1)^o and a = 21.308(2) Å, b = 11.9067(9) Å, c = 7.5606(6) Å, = 100.763(1)^o, respectively. Compound 1, a rare example of carboxylic group bound to a cyclohexene ring, forms an infinite intermolecular hydrogen-bonded polymer [O1 O2(–x + 1/2, y + 1/2, –z + 2) 2.697(2) Å], whereas molecules of compound 2 are linked to form an asymmetric hydrogen-bonded dimer [O1 O2(–x, y, –z) 2.657(3) Å].