DFT and ab initio calculations of the vibrational frequencies and visible spectra of triazenes derived from cyclic amines

We present a detailed analysis of the structural, infrared spectra and visible spectra of the 4-substituted aminoazo-benzenesulfonyl azides. The preparation of 4-sulfonyl azide benzenediazonium chloride with cyclic amines of various ring sizes (pyrrolidine, piperidine, 4-methylpiperidine, N-methylpiperazine, morpholine and hexamethyleneimine) have been investigated theoretically by performing HF and DFT levels of theory using the standard 6-31G* basis set. The optimized geometries and calculated vibrational frequencies are evaluated via comparison with experimental values. The vibrational spectral data obtained from solid phase FT-IR spectra are assigned modes based on the results of the theoretical calculations. The observed spectra are found to be in good agreement with the calculations.     

Theoretical investigation of the electronic spectra of aromatic nitrosooxides with allowance for solvent effects

Density functional theory methods correctly describe some properties of nitrosooxides. Electronic spectral data have been calculated for seven para-substituted aromatic nitrosooxides in different solvents using the UB3LYP/6-311+G(d,p) approximation. The calculated positions of maxima in UV spectra correlate with experimental data with high coefficient. Equations are suggested for predicting the positions of absorption maxima for the para-R-C₆H₄-NOO under study.     

Calculation of doubly excited even strontium states

The perturbation theory with zero order model potential has been successfully used for calculating the spectral characteristics (energies, radiative lifetimes, autoionization widths) of highly excited Rydberg and autoionization states of rare earths. Here, the same method is applied for investigating the 4dns, 4dnd and 4dng doubly excited Rydberg states of Sr. The obtained energies of the states are in good agreement with the experimental data of other authors. The calculation aims to give a more complete and reliable information about the experimentally observed spectra, as well as to predict the location of more highly excited states.     

Electronic spectra and π-electronic structure of some hydroxyazo dyes

The electronic spectra of some hydroxyazo dyes, derivatives of azobenzene and benzeneazonaphthalene, are investigated and electronic transitions in the UV and visible regions assigned.The difference in spectral assignment of o- and p-hydroxyazobenzenes is explained using MO theory.Observations are made about possible azo—quinonehydrazone tautomerism in o-,m- and p-hydroxy derivatives of 4-phenylazo-1-naphthol and 1-phenylazo-2-naphthol and the quantitative value for the contribution of each tautomeric form is calculated.Calculations using the SCl—Cl method, within the PPP approximation, are performed for some hydroxyazo derivatives. The results of the calculations agreed significantly with the experimental spectral curves. Spectral differences between o- and p-hydroxyazobenzenes are established. It is shown that there is charge transfer from the aromatic rings to the azo group in the first excited singlet state.     

Vibrational studies,NMR analysis,modeling of electronic and thermodynamical parameters of 1,3-bis(4-benzamido)triazene

The optimized geometry, vibrational wavenumbers, ¹H and ¹³C chemical shift values of 1,3-bis(4-benzamido)triazene, BBT, in the ground state were computed with the Hartree-Fock (HF) and density functional theory method (PBE1PBE) with 6-311+G(2d,p) basis set. The harmonic vibrational wavenumbers of BBT were calculated and the scaled values were compared with the experimental FT-IR spectra. A detailed interpretation of the NMR spectra of BBT was reported. The calculated data are in reasonably good agreement with experimental measurements. Moreover, the log P value was estimated with ChemBioOffice Ultra 11.0, ACD/LogP, and ALOGPS programs.     

Measuring molecular force fields: Terahertz,inelastic neutron scattering,Raman, FTIR,DFT, and BOMD molecular dynamics of solid l-serine

A vibrational analysis of polycrystalline l-serine is provided using experimental terahertz, FTIR, Raman and inelastic neutron scattering (INS) spectra, calculated INS spectra – and Born–Oppenheimer molecular dynamics (BOMD) simulations from which the power spectra for the electronegative elements are compared to the THz spectra. Corrections are made to density functional theory (DFT) calculations for van der Waals interactions. Assignments and potential energy distributions are included for all 3N = 336 normal modes of an eight molecule supercell, including those for 48 non-bonded whole molecule translating and rotating vibrations, of which three are acoustic modes, usually not considered. Calculated and observed frequencies differ by an average 3 cm⁻¹ (s = 4). The INS spectrum of these modes below 100 cm⁻¹, calculated from energy second derivatives, show a remarkable similarity to the experimental 10 K spectra. The calculated low frequency modes are insensitive to small changes in cell parameters and geometry. THz intensities are represented by power spectra and not calculated explicitly. Nevertheless, power spectra of 13 ps BOMD trajectories at classical temperatures of 20 K, 400 K, and 500 K are markedly similar to the experimental terahertz spectra at 77 K and 298 K. Calculations on a serine crystal supercell 2 × 2 × 2 molecules deep appear to include, in a crude but fortuitously accurate way, enough of the principle out of phase dispersion to yield a match with experimental frequencies and intensities.     

Excited and ionized states of RuO4 and OsO4 studied by SAC and SAC-CI theories

The excitation and ionization spectra of RuO₄ and OsO₄ are studied theoretically by the symmetry-adapted cluster (SAC ) and SAC-CI theories. This is the attempt to assign whole of the spectra by ab initio calculations including electron correlations. In the ground state, electron correlations work to reduce the polarity of the M–O bond overestimated in the Hartree–Fock calculation. The Os–O bond is stronger than is the Ru–O bond, which is reflected in the differences of the excitation and ionization spectra of RuO₄ and OsO₄. The excitation energies of the experimental spectra are well reproduced by the SAC-CI theory, though the calculated intensities of some peaks are very small in comparison with the experiments. The outer-valence ionization spectra calculated by the SAC-CI theory agree well with the experimental photoelectron spectra. Some shake-up peaks that are accompanied with an electron-transfers from oxygen to metal are also calculated.     

Simulating the structureless emission bands of Mn2+ ions in ZnCO3 and CaCO3 matrices by means of quantum chemistry

Results from theoretical studies on the structureless luminescence spectra of Mn²⁺ impurity ions in matrices of calcite (CaCO₃) and smithsonite (ZnCO₃) are reported. The positions of the maxima and the width of the ⁴ T ₁(⁴ G) → ⁶ A ₁(⁶ S) emission bands of the indicated luminophors are calculated using a combined approach based on the periodic and cluster methods of quantum chemistry, and on well-known models of the vibrational broadening of electronic transition bands of impurity centers in crystals. The calculated parameters of the spectral bands are compared with the known experimental data and discussed in terms of the structural features of the investigated matrices and the contribution from lattice vibrations in the mechanism of broadening.     

Density functional theory study of vibrational spectra. 8. Assignment of fundamental vibrational modes of 9,10-anthraquinone and 9,10-anthraquinone-d8

Density functional theory (using Becke's exchange and Lee-Yang-Parr's correlation functionals (BLYP)) and ab initio Hartree-Fock calculations were carried out in order to investigate the molecular structure and vibrational spectra of 9,10-anthraquinone and its perdeuterated analog. The calculated structural and spectral features are in good agreement with the available experimental results. Most of the BLYP/6-31G* non-CH(D) stretching frequencies are slightly lower than reliable experimental assignments; the mean absolute deviation is about 14 cm⁻¹. On the basis of agreement between calculated and experimental results, assignments of the fundamental vibrational modes were examined and some reassignments were proposed. The calculated results can serve as a guide for a future experimental search for the missing fundamentals of the target molecules.     

Electronic Structure and Circular Dichroism of Natural Alboatisins Isolated from Aerial Parts of Isodon Albopilosus: DFT and TDDFT Study

The stable conformations of a series of bioactive molecules, (?)-alboatisins A?C, are identified via Monte Carlo searching with the MMFF94 molecular mechanics force field. Then, the optical rotation (OR) values, vibrational circular dichroism (VCD), and electronic circular dichroism (ECD) spectra were calculated using the gradient-corrected density functional theory method. The vibrational and transition modes of molecular chirality were explored in terms of their microscopic origin. The calculated specific rotations are in agreement with the experimental values. From the OR analysis, it was concluded that optical rotation values areregulated by hydroxyl substitution. Vibrations occurring on the chiral skeleton may cause strong absorption in VCD spectra; VCD spectra are thus the spectral response to deformation vibrations on the chiral carbon skeleton. The lowest-energy negative Cotton effect is caused by σ→π^* transition. Frontier molecular orbital analysis showed that strong ECD absorptions are produced when the dominant transition on the chiral skeleton is asymmetric; ECD spectra show the result of transitions lacking asymmetry on the chiral skeleton.     

Molecular structure, spectroscopic studies and first-order molecular hyperpolarizabilities of ferulic acid by density functional study

Quantum chemical calculations of energies, geometrical structure and vibrational wavenumbers of ferulic acid (FA) (4-hydroxy-3-methoxycinnamic acid) were carried out by using density functional (DFT/B3LYP/BLYP) method with 6-31G(d,p) as basis set. The optimized geometrical parameters obtained by DFT calculations are in good agreement with single crystal XRD data. The vibrational spectral data obtained from solid phase FT-IR and FT-Raman spectra are assigned based on the results of the theoretical calculations. The observed spectra are found to be in good agreement with calculated values. The electric dipole moment (μ) and the first hyperpolarizability (β) values of the investigated molecule have been computed using ab initio quantum mechanical calculations. The calculation results also show that the FA molecule might have microscopic nonlinear optical (NLO) behavior with non-zero values. A detailed interpretation of the infrared and Raman spectra of FA was also reported. The energy and oscillator strength calculated by time-dependent density functional theory (TD-DFT) results complements with the experimental findings. The calculated HOMO and LUMO energies shows that charge transfer occur within the molecule. The theoretical FT-IR and FT-Raman spectra for the title molecule have been constructed.     

Spectral analysis of acetylcholine halides by density functional theory calculations

The optimized molecular structures, vibrational frequencies and ¹H and ¹³C NMR chemical shifts of acetylcholine halides (F, Cl, and Br) have been investigated using density functional theory (B3LYP) method with 6-311G(d) basis set. The comparison of their experimental and calculated IR, R and NMR spectra of the compounds has indicated that the spectra of three optimized minimum energy conformers can simultaneously exist in one experimental spectrum. Thus, it was concluded that the compounds simultaneously exist in three conformations in the ground state. The calculated optimized geometric parameters (bond lengths and bond angles), vibrational frequencies and NMR chemical shifts for the minimum energy conformers were seen to be in a good agreement with the corresponding experimental data. All the assignments of the theoretical frequencies were performed by potential energy distributions using VEDA 4 program.     

Temperature-dependent vibrational spectroscopic studies of pure and gold nanoparticles dispersed 4-n-Hexyloxy-4’-cyanobiphenyls

Raman spectra of pure and 2 wt.% gold nanoparticles (GNPs) dispersed liquid crystalline compound 4-n-Hexyloxy-4?- cyanobiphenyls (6OCB) has been recorded as a function of temperature from room temperature (solid crystal) to 80°C (isotropic liquid) in the spectral region of 500–2500 cm^?1. The variation of Raman spectral parameters (peak positions and line width) with temperature is used to explain the changes in molecular alignment and its effect on inter-/intra-molecular interactions at crystal-Nematic (K-N) transition. To understand the change in molecular structure during phase transition and on account of dispersion of gold nanoparticles in pure liquid crystal more precisely, two spectral regions 1000–1500 cm^?1 and 1500–2400 cm^?1 have been selected separately. From the detailed study, it is concluded that increased orientational/vibrational freedom of the molecules as well as delocalisation of electron clouds results in the spectral anomalies at K-N transition. The geometrical structure of 6OCB was optimised using density functional theory (DFT) and theoretical Raman spectra have been obtained for comparison with experimental spectra. The tentative assignment of vibrational modes observed in our region of study was calculated based on potential energy distribution (PED) using vibrational energy distribution analysis (VEDA) calculation.     

Spectral and Quantum Mechanical Characterization of 3-(2-Benzothiazolyl)-7-(Diethylamino) Coumarin (Coumarin 6) in Binary Solution

ABSTRACT

Absorption and fluorescence spectra of 3-(2-benzothiazolyl)-7-(diethylamino) coumarin in various solvents were recorded to characterize intermolecular interactions. The contributions of each interaction to the total spectral shifts were estimated. The properties of coumarin 6 were calculated using density function theory with the hybrid functional B3LYP level theory combined with 6-311?+?G basis set. The excited state dipole moment was calculated from the variation of spectral shifts in absorption and fluorescence with solvent permittivity and refractive index using the Lippert–Mataga, Bakhshiev, and Kawski–Chamma–Viallet equations.     

含硫氨基酸的太赫兹光谱

利用太赫兹时域光谱(THz-TDS)技术研究室温条件下多晶含硫氨基酸L-蛋氨酸(Met)和L-半胱氨酸(Cys)的光谱特性, 得到相应的吸收谱和折射率谱, 表明含硫氨基酸在THz波段具有区别于其它氨基酸的显著特征. 在实验测量的有效光谱范围0.2～2.8 THz内, L-蛋氨酸的THz吸收峰分别位于1.06, 1.88和2.70 THz; L-半胱氨酸的吸收峰分别位于1.40, 1.70, 2.33和2.61 THz, 两种氨基酸的平均折射率均为1.44. 利用GAUSSIAN 03软件包中的Hartree-Fock理论计算了蛋氨酸双分子的低频振动谱, 表明了与蛋氨酸各吸收峰对应的分子微观振动模式, 并对实验光谱进行了解析讨论.     

Acid-base properties of the N3 ruthenium(ii) solar cell sensitizer: a combined experimental and computational analysis

We report a combined spectro-photometric and computational investigation of the acid-base equilibria of the N3 solar cell sensitizer [Ru(dcbpyH(2))(2)(NCS)(2)] (dcbpyH(2) = 4,4'-dicarboxyl-2,2' bipyridine) in aqueous/ethanol solutions. The absorption spectra of N3 recorded at various pH values were analyzed by Single Value Decomposition techniques, followed by Global Fitting procedures, allowing us to identify four separate acid-base equilibria and their corresponding ground state pK(a) values. DFT/TDDFT calculations were performed for the N3 dye in solution, investigating the possible relevant species obtained by sequential deprotonation of the four dye carboxylic groups. TDDFT excited state calculations provided UV-vis absorption spectra which nicely agree with the experimental spectral shapes at various pH values. The calculated pK(a) values are also in good agreement with experimental data, within <1 pK(a) unit. Based on the calculated energy differences a tentative assignment of the N3 deprotonation pathway is reported.     

Investigating cyclic sotolon,maple furanone and their dimers in solution using optical rotation,electronic circular dichroism and vibrational circular dichroism

The experimental optical rotation (OR), electronic circular dichroism (ECD) and vibrational circular dichroism (VCD) spectra of (R)-3-hydroxy-4,5-dimethylfuran-2(5H)-one (sotolon, 1) and (R)-5-ethyl-3-hydroxy-4-methylfuran-2(5H)-one (maple furanone, 2) taken in chloroform were compared to their spectra calculated with time-dependent density functional theory (TDDFT). Sotolon was shown to exist as a dimer in chloroform while maple furanone remains a monomer. Transition state barriers for the enol/keto tautomerization of sotolon were calculated and found to be high. The VCD method offers promise to ultimately distinguish between the presence of monomers or dimers.     

Theory of the absorption and circular dichroism spectra of helical molecular aggregates

A theory of the electronic circular dichroism (CD) and optical rotatory dispersion (ORD) of infinite aggregates exhibiting cylindrical symmetry is presented in which, to the authors' knowledge, for the first time vibrational structure is included explicitly. It is shown that, with the coherent exciton scattering approximation in the Green function approach, the detailed vibrational structure of the aggregate absorption. CD and ORD bands can be calculated from a knowledge of the electronic coupling and the monomer absorption line shape alone. Detailed model calculations for a single helix are made and the results are used to expose the origin of different spectral features. A good reproduction of experimental J-aggregate spectra is obtained, using the same electronic interaction to fit both absorption and CD spectral line shapes. The theory allows some prediction of aggregate geometry to be made, but it is shown that an unambiguous geometrical assignment can only be made where experimental spectra for light of different propagation directions with respect to the cylinder axis are available.     

X-ray absorption and resonant Auger spectroscopy of O2 in the vicinity of the O 1s-->sigma* resonance: experiment and theory

We report on an experimental and theoretical investigation of x-ray absorption and resonant Auger electron spectra of gas phase O(2) recorded in the vicinity of the O 1s-->sigma(*) excitation region. Our investigation shows that core excitation takes place in a region with multiple crossings of potential energy curves of the excited states. We find a complete breakdown of the diabatic picture for this part of the x-ray absorption spectrum, which allows us to assign an hitherto unexplained fine structure in this spectral region. The experimental Auger data reveal an extended vibrational progression, for the outermost singly ionized X (2)Pi(g) final state, which exhibits strong changes in spectral shape within a short range of photon energy detuning (0 eV>Omega>-0.7 eV). To explain the experimental resonant Auger electron spectra, we use a mixed adiabatic/diabatic picture selecting crossing points according to the strength of the electronic coupling. Reasonable agreement is found between experiment and theory even though the nonadiabatic couplings are neglected. The resonant Auger electron scattering, which is essentially due to decay from dissociative core-excited states, is accompanied by strong lifetime-vibrational and intermediate electronic state interferences as well as an interference with the direct photoionization channel. The overall agreement between the experimental Auger spectra and the calculated spectra supports the mixed diabatic/adiabatic picture.     

Polymorphism of crystalline alpha-quaterthiophene and alpha-sexithiophene: ab initio analysis and comparison with inelastic neutron scattering response

Phonons in the alpha-quaterthiophene (4T) and alpha-sexithiophene (6T) polymorph phases are investigated using the direct method combined with density functional theory (DFT)-based total energy calculations. The simulation of inelastic neutron scattering spectra (INS) on the LT and HT polymorph phases of 4T and 6T enable the corresponding spectral signatures of these materials to be identified. In particular, there are two fingerprints: (i) the low-frequency vibrational modes (frequencies lower than 200 cm(-1)) and (ii) the vibrational modes in the 600-900 cm(-1) frequency range. The good agreement with the INS experimental data allows us to assign unambiguously the origin of all features (first-order and high-order processes) of these spectra and to predict that the LT phase is the phase measured experimentally both on the 4T and 6T materials. Moreover, the broad background in the 600-1400 cm(-1) frequency range and the well-defined features which appear around 940 cm(-1) in the calculated INS spectra of 4T/HT and 6T/HT are assigned to multiphonon contributions. This multiphonon contribution at 940 cm(-1), which is absent in the 4T/LT and 6T/LT INS spectra, also constitutes a fingerprint of the HT phases. Finally, the calculated dispersion curves of the two polymorph phases of 4T and 6T are given.