Pressure and trimethylaluminum effects on ethene/1‐hexene copolymerization with methylaluminoxane‐activated (1,2,4‐Me3Cp)2ZrCl2: Trimethylaluminum suppression of standard termination reactions after 1‐hexene insertion

Ethene homopolymerizations and copolymerizations with 1‐hexene were catalyzed by methylaluminoxane‐activated (1,2,4‐Me₃Cp)₂ZrCl₂. Investigations of the effects of various pressures on the homopolymerizations and copolymerizations and of the effects of different concentrations of trimethylaluminum (TMA) on the copolymerizations were performed. The characteristics of the ethene/1‐hexene copolymers agreed with expectations for changes in the ethene concentration: the incorporation of 1‐hexene decreased, whereas the melting point and crystallinity increased, with increasing pressure. The main termination mechanism of the homopolymerizations was β‐hydrogen transfer to the monomer. Termination mechanisms resulting in vinylidene unsaturations dominated in the copolymerizations. Standard termination mechanisms producing vinyl and trans‐vinylene unsaturations occurred in parallel and were not influenced by the ethene or TMA concentration. In addition, some chain transfer to TMA, producing saturated end groups after hydrolysis, occurred. Copolymerizations with different additions of TMA, with the other polymerization conditions kept constant, showed that the catalytic productivity [tons of polyethylene/(mol of Zr h)], the 1‐hexene incorporation, and the molecular weight (from gel permeation chromatography) were independent of the TMA concentration. Surprisingly, the vinylidene content decreased almost linearly with increasing TMA concentration. TMA might have coordinated to the catalytic site after 1‐hexene insertion and rotation to the β‐agostic state and, therefore, suppressed the standard termination reactions after 1‐hexene insertion. © 2005 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 43: 2584–2597, 2005     

Ammonia sensor with flavin-containing monooxygenase

A biosensor for ammonia solution was developed with a flavin-containing monooxygenase-3 (FMO3). The biosensor consisted of a Clark-type dissolved oxygen electrode and an FMO3 immobilized membrane. In order to amplify the biosensor output, a substrate regeneration cycle obtained by coupling the monooxygenase with L-ascorbic acid (AsA) as the reducing reagent system, was applied. The AsA 10.0?mmol?L^?1 concentration was able to optimally amplify the sensor output 11 times greater. The FMO3 biosensor was used with AsA to measure ammonia solution from 3.20 to 14.29?mmol?L^?1 and from 0.09 to 21.7?mmol?L^?1 with 5.0 and 10.0?mmol?L^?1 AsA, respectively. The FMO biosensor also had a good reproducibility such as a 2.5% coefficient of variation in eight multiple measurements, and the output current was maintained over a few hours. The selectivity of the FMO biosensor being attributed to enzyme specificity was obtained for several chemical substances (trimethyl amine, methyl mercaptan, dimethyl sulphide, and so on).     

Exogenous Addition of 25-Hydroxycholesterol Reduces Level of Very Long-Chain Fatty Acids in X-Linked Adrenoleukodystrophy

X-Linked adrenoleukodystrophy (X-ALD) is a severe metabolic disorder characterized by the accumulation of very long-chain fatty acids (VLCFAs). Recently, we demonstrated that levels of 25-hydroxycholesterol (25-HC) and cholesterol 25-hydroxylase (CH25H) were found to be elevated in X-ALD. Herein, we report that the exogenous addition of 25-HC significantly reduces C26:0 levels in X-ALD patient-derived fibroblasts and oligodendrocytes differentiated from induced pluripotent stem cells (iPSCs) derived from X-ALD patients. Moreover, 25-HC treatment was found to down-regulate the expression of ELOVL1, a key enzyme for the synthesis of C26. In addition, activation of liver X receptor (LXR), a molecular target of endogenous 25-HC, also reduced C26:0 level. The reduction of C26:0 levels by 25-HC treatment might result, at least partially, from the decrease of ELOVL1 expression as well as the activation of LXR. Our findings could provide a better understanding of the role of 25-HC in X-ALD and useful information to find therapeutic agents to treat X-ALD.     

Synthesis,thermal characterization,and tensile properties of alipharomatic polyesters derived from 1,3‐propanediol and terephthalic,isophthalic, and 2,6‐naphthalenedicarboxylic acid

In this work, three alipharomatic polyesters—poly(propylene terephthalate) (PPT), poly(propylene isophthalate) (PPI), and poly(propylene naphthalate) (PPN)—were prepared and studied with the aliphatic diol 1,3‐propanediol and the corresponding aromatic diacids. Their synthesis was performed by the two‐stage melt polycondensation method in a glass batch reactor. The thermal characterization of these polyesters was carried out with different thermal techniques such as simultaneous thermogravimetry/differential thermal analysis, thermomechanical analysis (TMA), and dynamic thermomechanical analysis. From the recorded values for the glass‐transition temperature (T_g) and melting temperature with all the aforementioned techniques, it could be said that they were in good agreement. According to the thermogravimetric results, PPT and PPI showed about the same thermal stability, whereas PPN seemed to be somewhere more thermostable. Remarkably, a transition existed immediately after T_g that was realized by the first derivative of TMA, and it was characterized as a midrange transition. For all polyesters, the average coefficient of linear thermal expansion was calculated with TMA. The secondary relaxations T_β and T_γ, recorded with dynamic mechanical thermal analysis, were mainly affected by the kinds of monomers. Concerning the mechanical properties, PPN had the highest tensile strength at break, whereas PPT had the highest elongation at break. © 2005 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 43: 3998–4011, 2005     

Targeted resequencing of candidate genes reveals novel variants associated with severe Beh?et's uveitis

Behçet''s disease (BD) is a chronic systemic inflammatory disorder characterized by four major manifestations: recurrent uveitis, oral and genital ulcers and skin lesions. To identify some pathogenic variants associated with severe Behçet''s uveitis, we used targeted and massively parallel sequencing methods to explore the genetic diversity of target regions. A solution-based target enrichment kit was designed to capture whole-exonic regions of 132 candidate genes. Using a multiplexing strategy, 32 samples from patients with a severe type of Behçet''s uveitis were sequenced with a Genome Analyzer IIx. We compared the frequency of each variant with that of 59 normal Korean controls, and selected five rare and eight common single-nucleotide variants as the candidates for a replication study. The selected variants were genotyped in 61 cases and 320 controls and, as a result, two rare and seven common variants showed significant associations with severe Behçet''s uveitis (P<0.05). Some of these, including rs199955684 in KIR3DL3, rs1801133 in MTHFR, rs1051790 in MICA and rs1051456 in KIR2DL4, were predicted to be damaging by either the PolyPhen-2 or SIFT prediction program. Variants on FCGR3A (rs396991) and ICAM1 (rs5498) have been previously reported as susceptibility loci of this disease, and those on IFNAR1, MTFHR and MICA also replicated the previous reports at the gene level. The KIR3DL3 and KIR2DL4 genes are novel susceptibility genes that have not been reported in association with BD. In conclusion, this study showed that target enrichment and next-generation sequencing technologies can provide valuable information on the genetic predisposition for Behçet''s uveitis.     

The monomer−dimer equilibria of liquid aliminum alkyls : III. Trimethylaluminum: the monomer−dimer equilibria of liquid and gaseous trimethylaluminum and triethylaluminum

There has been a dichotomy of opinion concerning the values for the heats of dissociation of trimethylaluminum (TMA) and triethylaluminum (TEA) in the liquid phase. It is believd that the result reported herein will enable these differences to be resolved. In the present study, the heat of dissociation (ΔH^o_d of liquid TMA is evaluated as 19.4₀±0.3₀-kcal · (mole of dimer)⁻¹ from the previously determined ΔH⁰_d of liquid TEA and new heat of mixing data for TMA−TEA. Essentially the same result is derived from the established ΔH⁰_d of gaseous TMA by application of a thermodynamic relationship between heats of dissociation and heats of vaporization (the “Dissociation−Vaporization Rule”). It is concluded that the experimental ΔH⁰_d values for liquid TEA (16.9₃ kcal · (mole of dimer)⁻¹) and gaseous TMA (20.4₀ are thermodynamically consistent. The ΔS⁰_dof liquid TMA is evaluated as 29.3±0.3 cal · K⁻¹ · (mole of dimer)⁻¹. The ΔH⁰_d valuesfor liquid adn gaseous TMA are shown to be thermodynamically consistent with vapor pressure data. Boiling points derived for pure TMA monomer and pure dimer are 8.1±2.1 and 131.95±0.02°C, respectively. Degrees of dissociation of TMA in the pure liquid state and at various mole fractions in aliphatic hydrocarbon solution are tabulated over a wide temperature range. The results indicate that the extent of dissociation of liquid TMA is 0.0047% at 20, 0.053% at 70, and 0.32% at 120°C.     

Molecular modeling and structural analysis of some tetrahydroindazole and cyclopentanepyrazole derivatives as COX-2 inhibitors

In an attempt to rationalize the search for new potential anti-inflammatory compounds on the COX-2 enzyme, we carried out an in silico protocol that successfully combines the prediction of physicochemical and pharmacokinetic properties, molecular docking, molecular dynamic simulation, and free energy calculation. Starting from a small library of compounds synthesized previously, it was found that 70% of the compounds analyzed satisfy with the associated values to physicochemical principles as key evaluation parameters for the drug-likeness; all the compounds presented good gastrointestinal absorption and cerebral permeability and they showed an interaction with the Arg 106 residue of the COX-2 isoenzyme. Finally, it was obtained that compound 3ab has a binding mode, binding energy, and stability in the active site of COX-2 like the reference drug celecoxib, suggesting that this compound could become a powerful candidate in the inhibition of the COX-2 enzyme. In addition, we realized the crystallographic analysis of compounds 3j, 3r, and 3t defining the crystal parameters and the Packing interactions.     

A [3Cu:2S] cluster provides insight into the assembly and function of the CuZ site of nitrous oxide reductase

Nitrous oxide reductase (N₂OR) is the only known enzyme reducing environmentally critical nitrous oxide (N₂O) to dinitrogen (N₂) as the final step of bacterial denitrification. The assembly process of its unique catalytic [4Cu:2S] cluster Cu_Z remains scarcely understood. Here we report on a mutagenesis study of all seven histidine ligands coordinating this copper center, followed by spectroscopic and structural characterization and based on an established, functional expression system for Pseudomonas stutzeri N₂OR in Escherichia coli. While no copper ion was found in the Cu_Z binding site of variants H129A, H130A, H178A, H326A, H433A and H494A, the H382A variant carried a catalytically inactive [3Cu:2S] center, in which one sulfur ligand, S_Z2, had relocated to form a weak hydrogen bond to the sidechain of the nearby lysine residue K454. This link provides sufficient stability to avoid the loss of the sulfide anion. The UV-vis spectra of this cluster are strikingly similar to those of the active enzyme, implying that the flexibility of S_Z2 may have been observed before, but not recognized. The sulfide shift changes the metal coordination in Cu_Z and is thus of high mechanistic interest.

Variants of all seven histidine ligands of the [4Cu:2S] active site of nitrous oxide reductase mostly result in loss of the metal site. However, a H382A variant retains a [3Cu:2S] cluster that hints towards a structural flexibility also present in the intact site.     

Kinetics and regioselectivity of peptide-to-heterocycle conversions by microcin B17 synthetase

Background: The Escherichia coli peptide antibiotic microcin 1317 (MccB17) contains four oxazole and four thiazole rings introduced post-translationally in the 69 amino acid McbA gene product, an MccB17 precursor, by the microcin B,C,D enzyme complex. Both monocyclic and 4,2-bis-heterocyclic moieties are generated. The enzymatic cyclization involves 14 of the. last 43 amino acids of McbA and requires the presence of the first 26 amino acids that function as a specificity-conferring propeptide.Results: We have constructed maltose-binding protein (MBP)-McbA_1–46 fusion proteins and have mutagenized the GIy39-Ser40-Cys41 (GSC) wild-type sequence to assess the regioselectivity and chemoselectivity of MccB17-synthetase-mediated heterocycle formation at the first two loci, residues 40 and 41 of McbA. Four single-site and four double-site substrates showed substantial differences in turnover as assessed by western assays, UV-visible spectroscopy and mass spectrometry. Cysteine-derived thiazoles form at a greater rate than serine-derived oxazoles. Formation of bis-heterocycles is sensitive both to composition and sequence context.Conclusions: The E. coli McbB,C,D MccBl 7 synthetase is the first peptide heterocyclization enzyme to be characterized. This study reveals substantial regioselectivity and chemoselectivity (thiazole > oxazole) at the most aminoterminal bis-heterocyclization site of McbA. The heterocyclization of GSS and GCC mutants of McbA_1–46 by MccB17 synthetase demonstrates that the complex can efficiently generate tandem bis-oxazoles and bis-thiazoles, moieties not found in MccB17 but present in natural products such as hennoxazole and bleomycin. The observations suggest a common enzymatic mechanism for the formation of peptide-derived heterocyclic natural products.     

Fleetamine (3-O-α-d-glucopyranosyl-swainsonine): the synthesis of a hypothetical inhibitor of endo-α-mannosidase

3-O-α-d-Glucopyranosyl-swainsonine was originally proposed¹⁷ as a potential inhibitor of the mammalian enzyme endo-α-mannosidase, but its synthesis has not been reported. Herein we report the total synthesis of this enigmatic compound, utilizing a halide-ion catalysed glycosylation of a swainsonine lactam with a glucosyl iodide donor as the key step. The resulting inhibitor was evaluated as an inhibitor of human endo-α-mannosidase, and as a ligand for bacterial orthologs from Bacteroides thetaiotaomicron and Bacteroides xylanisolvens, including active-centre variants, although no evidence for binding or inhibition was observed. The surprising lack of binding was rationalized by using structural alignment with an endo-α-mannosidase inhibitor complex, which identified deleterious interactions with the swainsonine piperidine ring and an essential active site residue.     

Possible effects on the polyethene chain structure of trimethylaluminum coordination to zirconocene catalysts

Ethene was polymerized with the catalytic systems L₂ZrCl₂/MAO/TMA (where L = Cp, Me₅Cp, or Me₄Cp; Cp = η⁵‐cyclopentadienyl; MAO = methylaluminoxane; and TMA = trimethylaluminum) at 60 °C, 2 bar, and Al_TMA/Zr ratios of 0–2700. The polymerization activity was reduced with the addition of TMA for L = Cp but was almost unaffected for the methyl‐substituted catalysts. Increasing the TMA concentration resulted in a lower molecular weight of the polymer, with the largest effect for L = Me₅Cp. A gel permeation chromatography analysis of the polymers revealed a high molecular weight shoulder and a nearly bimodal distribution for L = Me₅Cp at high TMA concentrations. A possible explanation of such a shoulder in terms of long‐chain branching was ruled out by dynamic viscosity measurements. The origin of this effect more likely stemmed from competition between chain transfer to aluminum and β‐hydrogen transfer reactions at two different sites, one TMA‐sensitive and one TMA‐insensitive. Polymerizations at various pressures and temperatures substantiated this assumption. A clue to the underlying mechanism came from investigations of chain transfer to TMA studied with density functional calculations. Complexation of Me₃Al to Zr was much stronger for L = Cp than for L = Me₅Cp. However, the overall chain‐transfer barrier was much higher for L = Cp. These results agreed both with the reduced activity for L = Cp and with the strongly reduced molecular weight for L = Me₅Cp observed with the addition of TMA. © 2001 John Wiley & Sons, Inc. J Polym Sci Part A: Polym Chem 39: 3566–3577, 2001     

Function of the hydrogen bond in the conversion of α- to β-Mo8O264− ions: Formation and structure of tetra(tributylhydrogenammonium) β-octamolybdate

Complex β-(Bu₃NH)₄Mo₈O₂₆ has been transformed from α-(Bu₄N)₄Mo₈O₂₆ in the presence of o-mercaptophenol (H₂mp) and CuCl₂ in MeOH, and structurally characterized. It can be considered as a dimer [(Bu₃NH)₂Mo₄O₁₃]₂ with a center of symmetry. Each molybdenum atom is in a severely distorted octahedral environment. Two types of H bond between the cations and the anions have been found in the complex: N–H⋯O and C–H⋯O, which may play important roles in the α→β transformation.     

Analysis of the area of material really tested by TMA

Deformation distribution within the specimen beneath the thermomechanical analysis (TMA) probe, found by using the finite element method (FEM), depends mainly on penetration depth, specimen thickness and diameter as well as on radius of the probe tip when the Poisson’s ratio influences it just slightly. For standard radius of the tip R_o=1 mm, most deformation is distributed in a material layer up to 0.5 mm thick independently on elastic modulus of a polymer at a glassy state. It is caused by the fact that maximal penetration depth for the polymers usually equals to about 0.05 mm. Because of this, the contact surface area is less than 0.17 mm² for the standard radius of the tip. This evidences that predominantly the specimen volume equal to  mm² (depth×area) is tested by the TMA at compression mode. For R_o=5 mm is tested the layer 2.5 mm thick. This makes possible to evaluate the material properties in the zone of different thickness depending on radius of the tip.     

Directed Evolution of RebH for Site‐Selective Halogenation of Large Biologically Active Molecules

We recently characterized the substrate scope of wild‐type RebH and proceeded to evolve variants of this enzyme with improved stability for biocatalysis. The substrate scopes of both RebH and the stabilized variants, however, are limited primarily to compounds similar in size to tryptophan. A substrate walking approach was used to further evolve RebH variants with expanded substrate scope. Two particularly notable variants were identified: 3‐SS, which provides high conversion of tricyclic tryptoline derivatives; and 4‐V, which accepts a broad range of large indoles and carbazoles. This constitutes the first reported use of directed evolution to enable the functionalization of substrates not accepted by wild‐type RebH and demonstrates the utility of RebH variants for the site‐selective halogenation of biologically active compounds.     

Recombinant 3-Hydroxy 3-Methyl Glutaryl-CoA Reductase from <Emphasis Type="Italic">Candida glabrata</Emphasis> (Rec-CgHMGR) Obtained by Heterologous Expression,as a Novel Therapeutic Target Model for Testing Synthetic Drugs

The enzyme 3-hydroxy-3-methyl-glutaryl CoA reductase (HMGR) is a glycoprotein of the endoplasmic reticulum that participates in the mevalonate pathway, the precursor of cholesterol in human and ergosterol in fungi. This enzyme has three domains: transmembrane, binding, and soluble. In this study, we expressed and purified the soluble fraction of the HMGR enzyme from Candida glabrata (CgHMGR) in an Escherichia coli heterologous system and used it as a model for studying its inhibitory activity. The soluble fraction of CgHMGR was fused to the maltose binding protein (MBP), purified, and characterized. Optimal pH was 8.0, and its optimal temperature activity was 37 °C. The k _m and V _max for the HMG-CoA were 6.5 μM and 2.26 × 10^?3 μM min^?1, respectively. Recombinant CgHMGR was inhibited by simvastatin presenting an IC₅₀ at 14.5 μM. In conclusion, our findings suggest that the recombinant HMGR version from C. glabrata may be used as a study model system for HMGR inhibitors such as statins and newly synthesized inhibitor compounds that might be used in the treatment of hypercholesterolemia or mycosis.     

Activation of hafnocene catalyzed polymerization of 1-hexene with MAO and borate

A study of 1-hexene polymerization with ethylene-bis(9-fluorenyl) hafnium dichloride has been carried out using two different cocatalyst systems, methyl-aluminoxane/trimethylaluminum (MAO/TMA) and tris-isobutyl-aluminum/N,N-dimethylanilinium tetrakis(pentafluorophenyl) borate (TIBA/borate). When MAO/TMA was used, 1-hexene polymerized into a low molar mass poly(1-hexene) with low catalytic activity. Activation with TIBA/borate increased polymerization activity drastically as well as the molar mass of the polymers. In order to analyze differences in the activity profiles, UV-Vis spectroscopy was employed to investigate ligand to metal charge transitions (LMCT) of the hafnocene dichloride during the activation process. The low catalytic activity and the fast chain transfer to the cocatalyst with MAO/TMA may originate from strong bonding between the metallocene cation and the MAO/TMA species thus obstructing monomer coordination and insertion.     

Rational Design of Practically Important Enzymes

Majority of native enzymes are poorly applicable for practical usage: that is why different methods of enzyme modification are used to obtain the biocatalysts with appropriate characteristics. Development of genome sequencing and various modern approaches in protein engineering allow one to identify protein of interest and to improve the enzyme properties for a particular process. This review describes the results on development of novel biocatalysts based on bioinformatics and rational design. New genes encoding formate dehydrogenase (FDH) from bacterium Staphylococcus aureus, yeasts Ogataea parapolymorpha and Saccharomyces cerevisiae and moss Physcomitrella patens (SauFDH, OpaFDH, SceFDH and PpaFDH, respectively), have been cloned. New FDHs were produced in the active form and characterized. SauFDH was shown to have at least 2-fold higher catalytic constant than other known FDHs. OpaFDH has catalytic parameters as good as those for soy FDH mutant forms, and in addition, is more thermostable. Apo- and holo-forms of SauFDH have been crystallized. Mutation of two Cys residues in Pseudomonas sp.101 enzyme (PseFDH) yields enzyme preparations with improved kinetic parameters and enhanced thermal and chemical stability. New generation of PseFDH preparations with the coenzyme specificity changed from NAD⁺ to NADP⁺ have been obtained. The effect of ionic liquids on the catalytic properties and thermal stability of six wild-type recombinant FDHs, and a number of their mutants, have been studied. In case of D-amino acid oxidase (DAAO), single-point mutations have been combined to create multi-point mutants. The introduced amino acid replacements have been shown to exert an additive effect, improving both kinetic parameters and increasing thermal and chemical stability. DAAO genes from Hansenula polymorpha yeast have been cloned. α-Amino acid ester hydrolase (AEH) gene has been cloned and expressed in the active form in E. coli. Structural modeling has been performed and the effectiveness in amino beta-lactams synthesis studied. The structure of a single-chain penicillin acylase from Alcaligenes faecalis (scAfPA) has been modeled and two variants of scAfPA gene was generated by PCR. Both variants have been expressed in E. coli, isolated and characterized. Catalytic properties of scAfPA were slightly better than those of its natural heterodimer.     

Novel Nor and Seco Triterpenoids from Koelpinia linearis

Three novel triterpenoids, C:D seco (8→14) urso-8(26),12(13)-dien-3β-ol, C:D seco (8→14) urso-8(26),13(14)-dien-3β-ol, and C:Dseco (8→14),27 nor-urso-12-ene-3β-20α-diol were isolated from Koelpinia linearis and characterized by spectral and chemical methods.