A copper-catalyzed asymmetric oxime propargylation enables the synthesis of the gliovirin tetrahydro-1,2-oxazine core

The bicyclic tetrahydro-1,2-oxazine subunit of gliovirin is synthesized through a diastereoselective copper-catalyzed cyclization of an N-hydroxyamino ester. Oxidative elaboration to the fully functionalized bicycle was achieved through a series of mild transformations. Central to this approach was the development of the first catalytic, enantioselective propargylation of an oxime to furnish a key N-hydroyxamino ester intermediate.

The bicyclic tetrahydro-1,2-oxazine subunit of gliovirin is synthesized through a diastereoselective copper-catalyzed cyclization of an N-hydroxyamino ester.

The fungal secondary metabolites gliovirin (2)¹ and pretrichodermamides A (3)² and E (4)³ are disulfide antibiotics that possess an unusual tetrahydro-1,2-oxazine (THO) core (Scheme 1). In addition to 2–4, several related oxazine natural products have been isolated, including the monothiolated peniciadametizine B (5);⁴ however, these oxazine-containing natural products are rare relative to the biosynthetically related diketopiperazine natural products, hundreds of which have been isolated to date.⁵ In addition to their oxazine cores, 2–4 are unusual in that their disulfide linkages are joined to the carbon framework at C4 and C12, in contrast to the more common epipolythiodiketopiperazines (ETPs) such as gliotoxin (1).⁶ These fungal metabolites are proposed to be formed through thiolation of simple cyclic dipeptides followed by oxidative elaboration of the peripheral functionality.⁷ Perhaps because of the synthetic challenge posed by the combined oxazine and disulfide motifs, there have been no syntheses of gliovirin (2) or the related compounds 3 and 4 to date.Open in a separate windowScheme 1PTP isomerism: gliovirin and related natural products.Whereas there are no syntheses of 2, syntheses of related dihydro-1,2-oxazine (DHO) natural products, including trichodermamide A (6), have been reported by the groups of Joullié,⁸ Zakarian,⁹ and Larionov.¹⁰ These efforts relied upon cycloaddition chemistry or pericyclic rearrangement to install the DHO cores. As part of our larger program targeting the synthesis of polysulfide natural products,^11,12 we envisioned a distinct approach to 2 that would involve late-stage diketopiperazine and disulfide formation, thereby reducing the synthetic challenge to that of preparing key THO 7 (Scheme 2). Oxazine 7 was expected to be accessible from 8avia epoxidation, desaturation, and functional group interconversion.Open in a separate windowScheme 2Retrosynthetic analysis of tetrahydro-1,2-oxazine 7.In a key synthetic step, the bicyclic THO 7 would be constructed by an intramolecular oxidative cyclization of N-hydroxydihydrophenylalanine derivative 10. For the preparation of 10, we considered two approaches: (1) N-oxidation of the corresponding dihydrophenylalanine 9, or (2) initial installation of the N–O bond followed by construction of the cyclohexan-1,3-diene from the alkyne of 11a. Given concerns about potential challenges of N-oxidation in the presence of the sensitive 1,3-cyclohexadiene motif, we elected to pursue a route where 10 would be accessed from α-propargyl N-hydroxyamino acid 11a by an enyne metathesis reaction.Having identified 11a as an intermediate on route to 7, a method to prepare this compound in enantioenriched form was desired. The most direct route to 11a was envisioned to be an enantioselective propargylation of N-siloxyglyoxalate 12 (see Table 1). However, no examples of catalytic asymmetric addition of allyl nor propargyl nucleophiles to similar oxime substrates were found in the literature. The most promising lead was from Hanessian and coworkers, in which an excess of a chiral allylzinc reagent was added to an oxime.¹³ However, this method had not been extended to the corresponding propargylation.Optimization of Cu-catalyzed oxime propargylation^a

A novel photoredox-active group for the generation of fluorinated radicals from difluorostyrenes

A 4-tetrafluoropyridinylthio group was suggested as a new photoredox-active moiety. The group can be directly installed on difluorostyrenes in a single step by the thiolene click reaction. It proceeds upon visible light catalysis with 9-phenylacridine providing various difluorinated sulfides as radical precursors. Single electron reduction of the C–S bond with the formation of fluoroalkyl radicals is enabled by the electron-poor azine ring. The intermediate difluorinated sulfides were involved in a series of photoredox reactions with silyl enol ethers, alkenes, nitrones and an alkenyl trifluoroborate.

A new photoredox-active group was applied for the generation of fluorinated radicals from difluorostyrenes under blue light irradiation.

Organofluorine compounds have gained increasing attention due to their utility in medicinal chemistry and agrochemistry in the last few decades.¹ Among various methods of fluorine incorporation, major attention in recent years has been devoted to radical pathways of fluoroalkylation by visible light photoredox catalysis.^2,3 This approach has attracted much attention because of the exceptionally mild reaction conditions and functional group tolerance. Known reagents, which are suitable for efficient radical fluoroalkylation such as halides, sulfonyl chlorides, sulfones, sulfinates, and Umemoto and Togni reagents (Scheme 1a),³ suffer from limited structural diversity and complicated preparation. Indeed, besides a significant amount of CF₃ and CF₂H derivatives, most of the other R_f radical precursors require multistep preparation under harsh conditions.^3c,4 As a result, operationally simple methods are still needed.Open in a separate windowScheme 1Generation of fluorinated radicals.Herein we report a simple and diversity-oriented strategy based on the direct introduction of a photoredox-active group into the fluorinated substrate. Our approach involves the addition of tetrafluoropyridine-4-thiol (2, PyfSH) to readily accessible difluorostyrenes followed by photocatalytic reduction with fluoroalkyl radical formation (Scheme 1b). As is well known, the thiol-ene reaction is an excellent instrument for difluorostyrene functionalization leading to sulfides.⁵ However, C–S bond reduction in common sulfides is challenging owing to their unfavorable redox potential compared to their S-oxygenated counterparts.^6,7 To overcome this obstacle, we propose to use an electron-withdrawing fluorinated pyridine moiety, which would be susceptible to SET reduction (Scheme 1a).Thus, we report the application of sulfides as a new class of readily available, bench-stable and easy-to-handle reagents for radical fluoroalkylation under visible-light photoredox catalysis. It is worth mentioning that our concept allows the synthesis of precursors of various R_f radicals in a single step from easily accessible compounds, which is often hard in practice for other photoredox-active groups.^3c,4 Thiol 2 can be easily prepared from commercially available pentafluoropyridine⁸ and the initial difluorostyrenes come from aldehydes by the Wittig-type reaction.⁹Styrenes 1 serve as a basis for a number of ionic synthones^9b,10,11 and recent developments in visible light photoredox catalysis allowed us to replace most of them with complementary radical synthones (Scheme 1c).^12,13 Herein, we disclose the last “blind spot” in the map of radical analogues of ionic difluorostyrene synthones. It should be noted that due to facile elimination of the fluorine atom in polar reactions, only a few examples of difluoroalkyl cation synthons have been described previously.¹¹To perform the addition of thiol 2 to styrenes 1, we applied a protocol involving the activation of thiols based on proton coupled electron transfer recently developed by our group.^5,14 Thus, screening of reaction conditions allowed us to identify the optimal system: 9-phenylacridine (PC-I) as the photocatalyst under blue light irradiation (see the ESI for details^†). The reaction is performed in cyclohexane and requires a virtually stoichiometric amount (1.1 equiv.) of the thiol 2. A series of styrenes 1 were reacted with thiols 2 leading to difluorinated sulfides 3 (Table 1). Aromatic and heteroaromatic substrates provided sulfides 3 in good to excellent yields. The only exception was the furan substituted product 3j, which had a low yield due to instability of 1j.¹⁵ The product 3k derived from α-pentyl-substituted difluorostyrene was also obtained. In contrast to the reactions with styrenes, only traces of sulfides were obtained with aliphatic gem-difluoroalkenes (see the ESI for details^†). It should also be pointed out that all reactions shown in Table 1 were performed on a 5 mmol scale.Addition of thiol 2 to gem-difluorostyrenes 1^a

Hyperpolarisation of weakly binding N-heterocycles using signal amplification by reversible exchange

Signal Amplification by Reversible Exchange (SABRE) is a catalytic method for improving the detection of molecules by magnetic resonance spectroscopy. It achieves this by simultaneously binding the target substrate (sub) and para-hydrogen to a metal centre. To date, sterically large substrates are relatively inaccessible to SABRE due to their weak binding leading to catalyst destabilisation. We overcome this problem here through a simple co-ligand strategy that allows the hyperpolarisation of a range of weakly binding and sterically encumbered N-heterocycles. The resulting ¹H NMR signal size is increased by up to 1400 times relative to their more usual Boltzmann controlled levels at 400 MHz. Hence, a significant reduction in scan time is achieved. The SABRE catalyst in these systems takes the form [IrX(H)₂(NHC)(sulfoxide)(sub)] where X = Cl, Br or I. These complexes are shown to undergo very rapid ligand exchange and lower temperatures dramatically improve the efficiency of these SABRE catalysts.

The scope of the hyperpolarisation method Signal Amplification by Reversible Exchange (SABRE) is dramatically expanded through the use of co-ligands to substrates that weakly interact with the active cataylst.

Hyperpolarised magnetic resonance is receiving increasing attention from both the analytical science and medical communities due to its ability to create signals that are many orders of magnitude higher than those normally detected under Boltzmann control.^1–6 The time and cost benefits associated with this improvement have propelled this area of research forward over the past few decades. Two of the most prominent techniques used to create hyperpolarisation are dissolution Dynamic Nuclear Polarisation (d-DNP) and Para-Hydrogen Induced Polarisation (PHIP),^7,8 which derive their non-Boltzmann spin energy level populations from interactions with unpaired electrons and para-hydrogen (p-H₂, the singlet spin isomer of hydrogen), respectively. Both of these methods have been reviewed in detail.^3–5,9,10Signal Amplification by Reversible Exchange (SABRE) is a PHIP method that does not involve the chemical incorporation of p-H₂ into the target substrate.^11,12 Instead, under SABRE, spin order transfer proceeds catalytically through the temporary formation of a scalar coupling network between p-H₂ derived hydride ligands and the substrate''s nuclei whilst they are located in a transient metal complex. The most common catalysts are of the type [Ir(H)₂(NHC)(sub)₃]Cl (where NHC = N-heterocyclic carbene and sub = the substrate of interest, Fig. 1a),^13,14 although other variants are known.^15–17 For SABRE to be accomplished, the target substrate must be able to reversibly ligate to the metal centre and this limits the methods applicability; although several routes to overcome this have been reported.^18–20 Recently, the use of bidentate ancillary ligands such as NHC-phenolates¹⁶ and phosphine-oxazoles²¹ has been shown to expand the applicability of SABRE for a variety of different ligands and solvents (Fig. 1b). For example, use of the PHOX ligand (PHOX = (2-diphenylphosphanyl)phenyl-4,5-dihydrooxazole) gives ¹H NMR signal gains of up to 132-fold for 2-picoline; a substrate previously shown to be unpolarised under classic SABRE conditions.²²Open in a separate windowFig. 1Development of the SABRE method for hyperpolarisation of a range of substrates.The use of co-ligands to stabilise the active SABRE catalyst has proven successful for substrates that weakly associate to the catalyst (Fig. 1c). Of particular note is the hyperpolarisation of sodium [1,2]-¹³C₂-pyruvate²³ and sodium ¹³C-acetate²⁴ which could be used as in vivo metabolic probes. The importance of co-ligands in breaking the chemical symmetry of the SABRE catalyst is also well established and co-ligands such as acetonitrile,²⁵ sulfoxides,^23,26 1-methyl-1,2,3-triazole²⁷ and substrate isotopologues²⁸ have been employed.We report here on the use of co-ligands to allow the NMR hyperpolarisation of weakly binding N-heterocyclic derived substrates with functionality in the ortho-position that have proven to be routinely inaccessible to the SABRE technique (Fig. 1d). ¹H signal gains of up to 1442 ± 84-fold were obtained for some of these substituted pyridines at 9.4 T and the expansion of this approach to ¹³C and ¹⁵N detection and other N-heterocyclic motifs is also exemplified.     

Correction: Crystal structure and metallization mechanism of the π-radical metal TED

Radical electrons tend to localize on individual molecules, resulting in an insulating (Mott–Hubbard) bandgap in the solid state. Herein, we report the crystal structure and intrinsic electronic properties of the first single crystal of a π-radical metal, tetrathiafulvalene-extended dicarboxylate (TED). The electrical conductivity is up to 30 000 S cm⁻¹ at 2 K and 2300 S cm⁻¹ at room temperature. Temperature dependence of resistivity obeys a T³ power-law above T > 100 K, indicating a new type of metal. X-ray crystallographic analysis clarifies the planar TED molecule, with a symmetric intramolecular hydrogen bond, is stacked along longitudinal (the a-axis) and transverse (the b-axis) directions. The π-orbitals are distributed to avoid strong local interactions. First-principles electronic calculations reveal the origin of the metallization giving rise to a wide bandwidth exceeding 1 eV near the Fermi level. TED demonstrates the effect of two-dimensional stacking of π-orbitals on electron delocalization, where a high carrier mobility of 31.6 cm² V⁻¹ s⁻¹ (113 K) is achieved.

The molecular arrangement that enables metallic conduction in a single-component pure organic crystal is revealed by single-crystal X-ray diffraction.

Organic molecular solids are typically insulating due to their paired electrons in spatially localized s- and p-orbitals. The concept of charge-transfer (CT) between donor and acceptor¹ enabled the development of conducting molecular complexes (salts) including semiconducting perylene-bromine,² metallic tetrathiafulvalene (TTF)-tetracyano-p-quinodimethane (TCNQ),³ and polyacethylene doped with halogen molecules.⁴ A different strategy was proposed in the 1970s based on organic radicals with an open-shell electronic structure.⁵ π-Radicals such as neutral-,⁶ fully-conjugated⁷ and zwitterionic (betainic)⁸ molecules, with an unpaired electron in their singly occupied molecular orbital (SOMO), offered potential candidates. However, all these π-radicals were insulators or semiconductors with a finite bandgap, which is due to the SOMO being localized on an individual molecule. In the Mott–Hubbard model,⁹ the case of the π-radical solids can be described by the on-site Coulomb repulsion U being larger than the electronic bandwidth W (U/W > 1), in contrast to U/W < 1 in molecular metals like CT metal systems (Fig. 1a).Open in a separate windowFig. 1(a) Schematic representation of the electronic band structure of Mott–Hubbard insulators (left) and possible molecular metals (right), respectively. Solids formed from typical π-radicals possess large on-site Coulomb repulsion U compared with the electronic bandwidth W, resulting a finite bandgap (left). This requires a new mechanism to expand W and overcome U to achieve a metallic state at ambient pressure in π-radical crystals. (b) Molecular structure of the zwitterionic radical, tetrathiafulvalene-extended dicarboxylate (TED) with a symmetric intramolecular hydrogen bond.A straightforward approach to realize high conductivity in π-radical systems is to enhance the intermolecular interaction by applying high pressure.¹⁰ Bisdithiazolyl radical crystal achieved W ∼ 1 eV near the Fermi level and the room temperature conductivity σ_RT = 2 S cm⁻¹ under 11 GPa pressure.^10c An alternative route is to decrease the interatomic spacing by incorporating a metal ion. Introduction of a semimetal Se and intermolecular hydrogen bonding in a donor-type radical succeeded to improve a conductivity to σ_RT = 19 S cm⁻¹ but still required high pressure over 1 GPa for breaking its insulating character.^10d An organometallic compound with a transition metal, [Ni(tmdt)₂], by contrast, is known to form a three-dimensional (3D) Fermi surface with W = 0.48 eV and metallic conduction with σ_RT = 400 S cm⁻¹ at ambient pressure.¹¹ A breakthrough concept for expanding W at ambient pressure is desired for achieving metallization in pure organic π-radicals.Tetrathiafulvalene-extended dicarboxylate (TED) is an organic air-stable zwitterionic radical (Fig. 1b),¹² which was designed based on carrier generation induced by a stably-introduced protonic defect (–H⁺) in hydrogen-bonding molecules without adopting CT between multiple molecules.¹³ A polycrystalline film of TED exhibited metallic conduction at ambient pressure, but the mechanism has not been clarified yet due to lack of single crystal information.¹² Herein, we report the first crystal structure and intrinsic electronic properties of the recently grown single crystal TED. Structural analysis and quantum chemical simulations based on the single crystal reveal the origin of its metallic behavior.     

Automated linkage of proteins and payloads producing monodisperse conjugates

Controlled protein functionalization holds great promise for a wide variety of applications. However, despite intensive research, the stoichiometry of the functionalization reaction remains difficult to control due to the inherent stochasticity of the conjugation process. Classical approaches that exploit peculiar structural features of specific protein substrates, or introduce reactive handles via mutagenesis, are by essence limited in scope or require substantial protein reengineering. We herein present equimolar native chemical tagging (ENACT), which precisely controls the stoichiometry of inherently random conjugation reactions by combining iterative low-conversion chemical modification, process automation, and bioorthogonal trans-tagging. We discuss the broad applicability of this conjugation process to a variety of protein substrates and payloads.

Controlled protein functionalization holds great promise for a wide variety of applications.

Applications of protein conjugates are limitless, including imaging, diagnostics, drug delivery, and sensing.^1–4 In many of these applications, it is crucial that the conjugates are homogeneous.⁵ The site-selectivity of the conjugation process and the number of functional labels per biomolecule, known as the degree of conjugation (DoC), are crucial parameters that define the composition of the obtained products and are often the limiting factors to achieving adequate performance of the conjugates. For instance, immuno-PCR, an extremely sensitive detection technique, requires rigorous control of the average number of oligonucleotide labels per biomolecule (its DoC) in order to achieve high sensitivity.⁶ In optical imaging, the performance of many super-resolution microscopy techniques is directly defined by the DoC of fluorescent tags.⁷ For therapeutics, an even more striking example is provided by antibody–drug conjugates, which are prescribed for the treatment of an increasing range of cancer indications.⁸ A growing body of evidence from clinical trials indicates that bioconjugation parameters, DoC and DoC distribution, directly influence the therapeutic index of these targeted agents and hence must be tightly controlled.⁹Standard bioconjugation techniques, which rely on nucleophile–electrophile reactions, result in a broad distribution of different DoC species (Fig. 1a), which have different biophysical parameters, and consequently different functional properties.¹⁰Open in a separate windowFig. 1Schematic representation of the types of protein conjugates.To address this key issue and achieve better DoC selectivity, a number of site-specific conjugation approaches have been developed (Fig. 1b). These techniques rely on protein engineering for the introduction of specific motifs (e.g., free cysteines,¹¹ selenocysteines,¹² non-natural amino acids,^13,14 peptide tags recognized by specific enzymes^15,16) with distinct reactivity compared to the reactivity of the amino acids present in the native protein. These motifs are used to simultaneously control the DoC (via chemo-selective reactions) and the site of payload attachment. Both parameters are known to influence the biological and biophysical parameters of the conjugates,¹¹ but so far there has been no way of evaluating their impact separately.The influence of DoC is more straightforward, with a lower DoC allowing the minimization of the influence of payload conjugation on the properties of the protein substrate. The lowest DoC that can be achieved for an individual conjugate is 1 (corresponding to one payload attached per biomolecule). It is noteworthy that DoC 1 is often difficult to achieve through site-specific conjugation techniques due to the symmetry of many protein substrates (e.g., antibodies). Site selection is a more intricate process, which usually relies on a systematic screening of conjugation sites for some specific criteria, such as stability or reactivity.¹⁷Herein, we introduce a method of accessing an entirely new class of protein conjugates with multiple conjugation sites but strictly homogenous DoCs (Fig. 1c). To achieve this, we combined (a) iterative low conversion chemical modification, (b) process automation, and (c) bioorthogonal trans-tagging in one workflow.The method has been exemplified for protein substrates, but it is applicable to virtually any native bio-macromolecule and payload. Importantly, this method allows for the first time the disentangling of the effects of homogeneous DoC and site-specificity on conjugate properties, which is especially intriguing in the light of recent publications revealing the complexity of the interplay between payload conjugation sites and DoC for in vivo efficacy of therapeutic bioconjugates.¹⁸ Finally, it is noteworthy that this method can be readily combined with an emerging class of site-selective bioconjugation reagents to produce site-specific DoC 1 conjugates, thus further expanding their potential for biotechnology applications.¹⁹     

Serine is the molecular source of the NH(CH2)2 bridgehead moiety of the in vitro assembled [FeFe] hydrogenase H-cluster

The active site of [FeFe] hydrogenase, the H-cluster, consists of a canonical [4Fe–4S]_H subcluster linked to a unique binuclear [2Fe]_H subcluster containing three CO, two CN⁻ and a bridging azadithiolate (adt, NH(CH₂S⁻)₂) ligand. While it is known that all five diatomic ligands are derived from tyrosine, there has been little knowledge as to the formation and installation of the adt ligand. Here, by using a combination of a cell-free in vitro maturation approach with pulse electronic paramagnetic resonance spectroscopy, we discover that serine donates the nitrogen atom and the CH₂ group to the assembly of the adt ligand. More specifically, both CH₂ groups in adt are sourced from the C3 methylene of serine.

The CH₂NHCH₂ bridgehead moiety of the [FeFe] hydrogenase H-cluster is derived from serine as revealed by isotope labeling and EPR spectroscopy.

Hydrogenases catalyze the reversible reactions of H₂ oxidation and proton reduction, and are involved in many microbial metabolic pathways.¹ [FeFe] hydrogenases in particular are hyper-efficient, with turnover rates up to 10⁴/s.² This has led to intense focus on [FeFe] hydrogenases for sustainable production of H₂ and the design of fuel cells.³ The active site of [FeFe] hydrogenases is a six-iron cofactor called the H-cluster (Scheme 1), which consists of a canonical cuboid [4Fe–4S]_H subcluster linked through a bridging cysteine (Cys) residue to a binuclear [2Fe]_H subcluster in which the two iron ions are coordinated by three CO, two CN⁻ and an azadithiolate (adt, NH(CH₂S⁻)₂) bridging ligand. The [2Fe]_H subcluster has been proposed to be the site for H₂ binding and hydride formation,^4,5 which serves as a natural blueprint for designing small molecule catalysts for hydrogen evolution reactions.⁶ The unique structure and catalytic activity has thus raised much interest in the biosynthesis of the H-cluster, which poses a great challenge in cofactor assembly that involves toxic ligands, oxygen sensitivity and an organic adt ligand that has little inherent stability.Open in a separate windowScheme 1Bioassembly of the H-cluster highlighting the source of each moiety.While the [4Fe–4S]_H subcluster in the H-cluster can be formed by the housekeeping gene products that are used to assemble such standard Fe–S clusters, the in vivo bioassembly of the unique [2Fe]_H subcluster requires three special Fe–S “maturase” proteins: HydE, HydF, and HydG.^7,8 Although the functions of HydE and HydF have not been fully elucidated,^9–12 recent studies indicate that HydG is a bifunctional 4Fe–4S radical S-adenosyl-l-methionine (SAM) enzyme which lyses tyrosine to generate CO and CN⁻ and forms a [(Cys)Fe(CO)₂(CN)] organometallic precursor to the H-cluster on a dangler Fe(Cys) site in HydG.^13–16 More recently, by using a synthetic [(Cys)Fe(CO)₂(CN)] carrier we have shown that the two sulfur atoms in the adt ligand are derived from the precursor-bound Cys, but that the CH₂NHCH₂ component is not.¹⁷ Taken together, the biosynthetic origins of the [Fe₂S₂(CO)₃(CN)₂] part of the [2Fe]_H subcluster are depicted in Scheme 1: all five diatomic ligands are tailored from tyrosine by HydG;¹⁸ the two sulfur atoms and the two Fe atoms are from the dangler Fe(Cys) site in HydG (which can be reconstituted with Fe²⁺ and free Cys in solution¹⁹). Remarkably, these components are all delivered to the binuclear cluster assembly in the form of the [(Cys)Fe(CO)₂(CN)] product of HydG. Given these recent advances, the only missing part of the puzzle is the crucial NH(CH₂)₂ moiety: what are its molecular precursors? It has been hypothesized that HydE, which is also a 4Fe–4S radical SAM enzyme, may be involved in the formation of adt, though its physiological substrate and reaction mechanism remains under investigation.^9,10 As for any enzymatic reaction, knowing the actual substrate(s) for the reaction is crucial for unraveling the ultimate mechanism. Therefore, determining of molecular sourcing of the CH₂NHCH₂ component of the adt bridge, currently unknown, is the focus of this work.Assembly of the H-cluster in the lab can be achieved by semi-synthetic and biochemical approaches other than directly co-expressing hydA, hydE, hydF and hydG genes in cells. One very useful method alleviates the need for HydG, HydE, and in some cases, HydF, by using a synthetic [Fe₂(adt)(CO)₄(CN)₂] complex as a direct donor to the [2Fe]_H subcluster assembly.^20–22 Another “cell free synthesis” approach uses HydE/F/G in an in vitro H-cluster maturation reaction developed by the Swartz group.^23,24 The specific in vitro maturation reaction used in our current investigation contains a mixture of E. coli cell lysate containing separately overexpressed HydE, HydF, HydG (all from Shewanella oneidensis), apo-HydA1 (from Chlamydomonas reinhardtii) that harbors the [4Fe-4S]_H subcluster, and a cocktail of low molecular weight cofactors and precursors.²³ This biochemical approach gives us the opportunity to use the same set of enzymes that build the H-cluster in cells, but also enables us to determine the molecular source of each of the components in the H-cluster by using isotope-labeled cofactors/precursors, a procedure that would be very difficult to carry out and fully control in vivo. For example, by supplementing 1-¹³C-Tyr or 2-¹³C-Tyr into the in vitro maturation reaction, the CO or CN⁻ ligands to the diiron subcluster of the maturated HydA1 are respectively labeled with ¹³C.^25,26 The presence of these ¹³C labels can then in turn be detected and analyzed by using advanced electron paramagnetic resonance (EPR) spectroscopy to measure the hyperfine couplings between the magnetic ¹³C nuclei and the unpaired electron spin distributed over the H-cluster in its redox-poised paramagnetic states. In this work, we now search for the source(s) of the CH₂NHCH₂ moiety by using a similar strategy of in vitro maturation coupled to high resolution EPR to screen the assembly products formed with various isotopically labeled small molecule candidates. The presence of nitrogen element in the CH₂NHCH₂ fragment suggests an amino acid origin as one possibility. A systematic screening by pulse EPR of the in vitro maturation products generated with ¹³C, ¹⁵N, and ²H-labeled amino acids reveals that serine (Ser) serves as a molecular source for the NH(CH₂)₂ moiety of the H-cluster.     

Crystals springing into action: metal–organic framework CUK-1 as a pressure-driven molecular spring

Mercury porosimetry and in situ high pressure single crystal X-ray diffraction revealed the wine-rack CUK-1 MOF as a unique crystalline material capable of a fully reversible mechanical pressure-triggered structural contraction. The near-absence of hysteresis upon cycling exhibited by this robust MOF, akin to an ideal molecular spring, is associated with a constant work energy storage capacity of 40 J g⁻¹. Molecular simulations were further deployed to uncover the free-energy landscape behind this unprecedented pressure-responsive phenomenon in the area of compliant hybrid porous materials. This discovery is of utmost importance from the perspective of instant energy storage and delivery.

Mercury porosimetry and in situ high pressure single crystal X-ray diffraction revealed the wine-rack CUK-1 MOF as a unique crystalline material capable of a fully reversible mechanical pressure-triggered structural contraction.

Reducing the world''s fossil fuel dependence is the focus of many global initiatives,¹ aiming to mitigate the effects of climate change through tapping into sustainable energy resources such as solar and wind power. However, increasing reliance on these renewable energy sources has introduced difficulties due to the offset between power availability and demand peaks. Complementary technologies are necessary to alleviate intermittent supply, such as peaking power plants, demand-side energy management, or large scale energy storage.² The latter is particularly desirable as it can decouple electricity production and consumption, however the lack of a “one size fits all” approach has led the scientific community to envisage unconventional energy storage strategies.One such avenue emerging in recent years is the storage of mechanical energy via the compression of a suitable stimuli-responsive system, either through the intrusion of a non-wetting fluid into hydrophobic porous frameworks,³ or by means of application of an external pressure on flexible materials.⁴The former approach, first pioneered using water intrusion in zeolites and silicas,¹¹ has recently been extended to small pore zeolitic imidazolate frameworks.¹² Unfortunately, besides requiring highly hydrophobic systems, water intrusion achieves a relatively low stored energy density,³ of around 3–25 J g⁻¹. The second strategy takes advantage of the compliant nature of bulk materials. Energy is stored through structural deformations, manifesting as continuous or sudden volume changes under external pressure. The energy stored in flexible materials over a compression/decompression cycle can be an order of magnitude higher compared to the values achieved using fluid intrusion in rigid porous systems.¹³ In theory, three types of pressure-induced structural behaviour can be envisioned for such a responsive system. If the structure contraction is non-reversible, all energy is dissipated and the system is categorized as a nano-shock absorber (Fig. 1b). For structural changes that are reversible upon decompression two families of system can be distinguished, i.e. a nano-damper (Fig. 1c) or an ideal nano-spring (Fig. 1d) when the p–V curves show hysteresis or fully overlap, respectively.¹⁴Open in a separate windowFig. 1(A) Schema of mechanical energy storage in compliant crystalline materials, implying a unit cell volume change between open (op) and contracted (cp) structures, and prototypical pressure-volume curves of stimuli-responsive materials under mechanical pressure for (B) nano-shock absorbers, exemplified by MIL-53(Al),⁵ MIL-53(Ga)-FA⁶ and ZIF-4(Zn),⁷ (C) nano-dampers e.g. MIL-53(Cr),⁸ MIL-47(V)⁹ and MIL-53(Al)-FA¹⁰ and (D) nano-springs, insofar exhibited exclusively by CUK-1 presented herein.Metal–organic frameworks (MOFs), a class of porous, crystalline materials comprised of metal vertices interconnected by organic linkers, are known to exhibit responsiveness to a variety of stimuli,^15,16 including external pressure.¹⁷ Recently, several frameworks of this family of hybrid materials have been shown to act as energy storing nano-dampers or energy dissipative nano-shock absorbers, as is the case for the highly flexible MIL-53(M)^5,8,10 and MIL-47(V)⁹ series and more recently ZIF-4(Zn)⁷ (see Fig. 1b and c for their related structural behaviours). In such flexible crystalline materials compression is associated with a displacive phase transition between distinct structures of differing unit cell volumes, denoted as open (op) and contracted (cp) forms^15,16 and illustrated in Fig. 1a, occurring reversibly or irreversibly for a nano-damper or nano-shock absorber, respectively. The considerable stored energy associated with this transition, in the range of 30–200 J g⁻¹ (up to 4 kJ g⁻¹ for shock absorbers¹⁸) is highly attractive from the perspective of mechanical energy storage. However, the hysteretic compression/decompression curve characterising known nano-damper MOFs leads to a partial loss of work energy, lowering the potential storage efficiency, as well as creating issues through heat dissipation. Insofar, the search for a ideal spring-like crystalline material, capable of reversible pressure-induced structural switching without any hysteresis (Fig. 1d) has been fruitless, precluding their applicability for efficient, high density energy storage applications. Herein, a subtle combination of Hg-porosimetry, high-pressure single crystal X-ray diffraction (SC-XRD) and molecular simulations reveals the 1D-channel CUK-1 (M, M = Co, Mg)¹⁹ MOF as the first compliant hybrid porous material with a spring-back mechanical breathing behaviour.Such unique mechanically-triggered structural response implies a continuous pore contraction/expansion between op and cp forms in a narrow pressure range of 280–290 MPa, accompanied by a unit cell volume change of 20.9%. This optimal scenario paves the way towards fast energy storage/delivery system of about 40 J g⁻¹. The channel-like CUK-1(M) composed of chains of μ₃-OH/O edge and vertex sharing metal octahedra (M = Co,¹⁹ Mg²⁰) coordinated by bidentate 2,4-pyridinedicarboxylic ligands, recently emerged as an attractive porous material owing to its promising sorption performance combined with environmentally-friendly hydrothermal synthesis and high thermal and chemical stability.^20–22 Its wine-rack topology and its relatively rigid behaviour upon guest adsorption are reminiscent to that of MIL-47(V) a MOF which interestingly underwent a hysteretic, reversible structural contraction upon exerting an external pressure of 125 MPa,⁹ associated with a stored/delivered energy of 33 J g⁻¹. Inspired by our previous findings on MIL-47(V), we deliberately explored the pressure-induced structural behaviour of CUK-1 in its isostructural Co and Mg forms. MOF synthesis was performed according to the protocol detailed in ESI.^† Phase purity was confirmed by powder XRD (Fig. S3, S4 and Table S1^†) while their textural features, including BET area and pore volume, were found to match previously reported data.^19,20Mercury intrusion curves were recorded on the powder samples up to a maximum of 413 MPa as shown for CUK-1(Co) in Fig. 2, its Mg variant being reported in Fig. S6, ESI,^† together with full experimental details. A substantial amount of Hg intrudes at low pressure (<10 MPa), due to compaction of the crystals and filling of inter-particle porosity. This is followed by a sudden volume change at 281 MPa where a sharp step is observed (see inset of Fig. 2). By analogy with the conclusions previously drawn for the series of MIL-53(M)/MIL-47(V) frameworks,^5,8–10 this intruded Hg volume increase is associated with a structural contraction of CUK-1(Co), as its channel size (approx. 6.6 Å) is an order of magnitude below the pore dimension where non-wetting mercury can intrude in this pressure range (at 52 Å). The extrusion curve shows a near-perfect overlap, indicating that the framework behaves as an ideal spring, with no hysteresis between the intrusion/extrusion branches.Open in a separate windowFig. 2Sequential mercury intrusion–extrusion curves on CUK-1(Co) powder, in blue line and red, respectively. Line is a guide for eye. Volume below 1 MPa corresponds to powder compaction and intercrystallite void filling. Dotted horizontal lines demarcate contraction lower and upper bounds. Inset highlights the intrusion step in a linear scale with the op/cp contraction marked with an arrow.Moreover, this behaviour is highly repeatable, as confirmed by four consecutive pressure cycles (in Fig. S5^†). Interestingly, the same behaviour also holds true for CUK-1(Mg) (Fig. S6^†), with a similar intrusion pressure of 288 MPa. Since the two metal ions show relatively similar ionic radius (Co²⁺: 1.50(7) Å and Mg²⁺: 1.41(7) Å),²⁴ the averaged metal–oxygen distance is nearly identical in their corresponding coordination: spheres: (Co–O: 2.107(20) Å and Mg–O: 2.073(20) Å). Such analogous metal-linker bond strength is most likely at the origin of the very similar pressure-induced response of the two materials. The high transition pressure of CUK-1(Co) underpins the inability of guest adsorption to induce a breathing effect as observed previously.^20,21 Indeed, the adsorption stresses encountered throughout guest insertion are simply insufficient to overcome the energetic penalty of transition.^14,25 The 0.143 mL g⁻¹ volume change associated with the observed step in the CUK-1(Co) intrusion curve corresponds to a 20.9% change in unit cell volume, lower than in the similar phenyl-based MIL-47(V) of 43%.⁹ However, the stored energy calculated through W = P × ΔV is 40 J g⁻¹, 20% larger than the value reported for MIL-47(V)⁹ of 33 J g⁻¹. Here, the higher pressure of CUK-1(Co) switching, 281 MPa vs. 125 MPa for MIL-47(V) balances out the ΔV term. Moreover, owing to its relatively dense framework, the volumetric energy density of CUK-1(Co) remains attractive when compared to water intrusion systems (Table S4^†).Considering an initial unit cell volume for the CUK-1(Co) op form of 2467 ų from PXRD (see ESI^†), the resulting cp form is estimated to exhibit a unit cell volume of 1950 ų, based on the Hg intruded volume increase at 281 MPa. In order to directly observe the contracted form and identify the mechanism underpinning these intriguing dynamics, high pressure SC-XRD experiments were carried out in a membrane diamond anvil cell (mDAC). Individual CUK-1(Co) crystals were placed in a gasket between the polished diamonds of the mDAC, and immersed in a hydrostatic pressure transmitting medium of silicone oil AP-100, with a gold flake used to monitor inner mDAC pressure (full single crystal synthesis conditions and SC-XRD methodology available in the ESI^†).At ambient pressure, the indexed unit cell volume of the initial op form of CUK-1(Co) is nearly identical (2492 ų) to that of the previously reported²⁰ dehydrated monoclinic phase (2466.72 ų). Upon increasing DAC pressure to around 0.3 GPa, a volume contraction to the cp phase begins, which is in line with Hg porosimetry experiments. Reflections obtained from integrated 2D diffraction images were used to solve the pressure-induced structure through a dual space recycling algorithm in an expanded P1 setting, then further refined on F² using the SHELX suite²⁶ (complete data treatment methodology available in the ESI^†). The structure maintains the same C2/c space group throughout the transition between the two forms, and as such the spring-like dynamics of the framework can be described as a continuous contraction in a narrow pressure range. Above 0.5 GPa, the cp form is attained, with further pressure application leading to a linear decrease of its unit cell volume by 4% up to 1.8 GPa (Fig. 3).Open in a separate windowFig. 3Evolution of the CUK-1(Co) unit cell volume determined through indexation of Bragg reflections as a function of applied pressure as recorded in a DAC. Unit cell parameters corresponding to each pressure point can be found in Table S5, ESI.^†The unit cell dimensions of the solved cp form at 0.5 GPa are provided in Table 1, alongside as-indexed pristine op form parameters with Fig. 4a illustrating the two structures. The anisotropic transition is similar in nature to that of MIL-53(M)/MIL-47(V), characterised by a compaction in the b-direction (from approx. 13 Å to 9 Å) and an elongation along the a-axis (from 18 to nearly 20 Å). The change in the c-parameter is minimal, with only a slight increase, as it lies in the plane of the highly rigid octahedrally coordinated metal chains. A lowering of the angle (from 103 to 99°) is also observed, as the 1D parallel pores are straightened via the linker-induced torsion. A table comparing specific atomic distances, angles and torsions in the two forms is available in Table S7, ESI.^† The unit cell volume of the identified cp phase at 0.5 GPa of 1972 ų is only slightly higher than the value estimated from porosimetry measurements (as 1950 ų). We attribute this offset to the different interactions of the crystal surface with the respective pressure transmitting medium (mercury vs. silicone oil), as observed previously.⁵Crystallographic data of the pristine (op) and high pressure (cp) phases as determined from the CUK-1(Co) SC-XRD

Ferro-self-assembly: magnetic and electrochemical adaptation of a multiresponsive zwitterionic metalloamphiphile showing a shape-hysteresis effect

Metallosurfactants are molecular compounds which combine the unique features of amphiphiles, like their capability of self-organization, with the peculiar properties of metal complexes like magnetism and a rich redox chemistry. Considering the high relevance of surfactants in industry and science, amphiphiles that change their properties on applying an external trigger are highly desirable. A special feature of the surfactant reported here, 1-(Z)-heptenyl-1′-dimethylammonium-methyl-(3-sulfopropyl)ferrocene (6), is that the redox-active ferrocene constituent is in a gemini-position. Oxidation to 6⁺ induces a drastic change of the surfactant''s properties accompanied by the emergence of paramagnetism. The effects of an external magnetic field on vesicles formed by 6⁺ and the associated dynamics were monitored in situ using a custom-made optical birefringence and dual dynamic light scattering setup. This allowed us to observe the optical anisotropy as well as the anisotropy of the diffusion coefficient and revealed the field-induced formation of oriented string-of-pearls-like aggregates and their delayed disappearance after the field is switched off.

The self-organization properties of a stimuli responsive amphiphile can be altered by subjecting the paramagnetic oxidized form to a magnetic field of 0.8 T and monitored in real time by coupling optical birefringence with dynamic light scattering.

Amphiphiles (or surfactants) combine hydrophilic (the so-called headgroups) and lipophilic entities (the so-called tails) as integral parts of their molecular structures. This particular construction principle provides them with the ability to display concentration-dependent self-organization in nonpolar and polar solvents.¹ Amphiphiles with advanced functions that go far beyond the traditional ones as emulsifiers, stabilizing agents for interfaces, or detergents were meanwhile realized by skillful manipulation of any of its constituents.^2–4 Recent examples are micellar LEDs,^5,6 catalysts,^7–9 or batteries.¹⁰ Such applications are important hallmarks on the way to even more sophisticated amphiphiles such as the ones found in nature, e.g. in the pockets of enzymes.^11–18 An important milestone is the advent of (multi-) stimuli-responsive amphiphiles, whose encoded functionalities respond to (different) external triggers. Such systems are capable of adaptive self-assembly, which can be controlled using an external input such as the pH, temperature, ionic strength, or redox state.^19–26Paramagnetic amphiphiles, recently reviewed by Eastoe and coworkers, constitute a fascinating family of stimuli-responsive surfactants.²⁷ Particular attention has been paid to magnetic ionic liquids based on amphiphilic transition metal complexes, as their properties are often superior to those of conventional magnetic fluids (ferrofluids).^28–31 Self-assembly results in high effective concentrations of the paramagnetic metal centers, and this in turn allows us to control their physico-chemical properties and the morphologies of their superstructures through an external magnetic field. Such a scheme has the added advantage that the external stimulus is non-invasive. In many current realizations of such systems, however, the magneto-active (transition) metal ion is only present as a constituent of the counterion of a cationic surfactant, but is not an integral constituent of the surfactant itself.^21,30,31Some of us have previously reported redox-switchable as well as paramagnetic stimuli-responsive amphiphiles of relevance to the current work.^32,33 We thought that ferrocene would be an ideal building block in order to combine both these kinds of stimuli within one single amphiphile.^34–37 On oxidation, the diamagnetic, hydrophobic ferrocene nucleus is transformed into a paramagnetic S = 1/2 ferrocenium ion with a distinct hydrophilic character.^38–41 Oxidation does hence not only generate a magnetic moment, but also transfers the ferrocene nucleus from the lipo- to the hydrophilic part of the amphiphile, thereby changing its entire structure. A 1,1′-disubstitution pattern of the ferrocene scaffold, which is synthetically well accessible,^34,42–44 seemed particularly suited for such an endeavor.Studies on paramagnetic amphiphiles are often thwarted by the non-trivial analytics involved in their characterization. Detailed investigations often rely on small-angle neutron scattering (SANS), which is time-consuming and costly and suffers from poor availability.^{27,30,31,45–47} Moreover, SANS is only of limited value for following kinetically fast processes which would be desirable for the live monitoring of structural changes occurring in solution. Optical birefringence is a well-established method to monitor the dynamic response of materials to external fields.^48–50 Although of high intrinsic value, optical birefringence measurements in magnetic fields were only rarely applied for the study of paramagnetic amphiphiles.²⁹We here report the zwitterionic, ferrocene-based amphiphile FcNMe₂SO₃Heptene 6 (see Fig. 1, Fc = ferrocenyl) with a sultone headgroup. Compound 6 is unique in that its self-assembly properties can be controlled by three different external stimuli, namely the (i) addition of an electrolyte, (ii) addition of an oxidant/reductant, and (iii) exposure to an external magnetic field. We also demonstrate that optical birefringence in combination with dynamic light scattering (DLS) measurements in two orthogonal directions provides detailed insights into the functional response of aggregated magnetic nanoparticles formed by 6⁺ to an external magnetic field in real time. Specifically, we have observed the formation of string-of-pearls-like aggregates of 6⁺ in a magnetic field (0.8 T), the field-induced anisotropy of the diffusion of aggregated nanoparticles, and a hysteresis effect for their disappearance after the magnetic field is switched off. Thus, the anisotropy of larger aggregates persists for more than 5 min, while the structural alignment of smaller ones vanishes at a significantly faster rate.Open in a separate windowFig. 1Synthesis of FcNMe₂SO₃Heptene (6). (a) Synthesis of 6; (b) molecular structure of 6 crystallized from acetonitrile. C; dark grey, N; turquoise, Fe; orange, S; yellow, O; red, H atoms are omitted for clarity.     

Asymmetric total synthesis of (+)-xestoquinone and (+)-adociaquinones A and B

The asymmetric total synthesis of (+)-xestoquinone and (+)-adociaquinones A and B was achieved in 6–7 steps using an easily accessible meso-cyclohexadienone derivative. The [6,6]-bicyclic decalin B–C ring and the all-carbon quaternary stereocenter at C-6 were prepared via a desymmetric intramolecular Michael reaction with up to 97% ee. The naphthalene diol D–E ring was constructed through a sequence of Ti(Oi-Pr)₄-promoted photoenolization/Diels–Alder, dehydration, and aromatization reactions. This asymmetric strategy provides a scalable route to prepare target molecules and their derivatives for further biological studies.

The asymmetric total synthesis of (+)-xestoquinone and (+)-adociaquinones A and B was achieved in 6–7 steps using an easily accessible meso-cyclohexadienone derivative.

Various halenaquinone-type natural products with promising biological activity have been isolated from marine sponges of the genus Xestospongia¹ from the Pacific Ocean. (+)-Halenaquinone (1),^2,3 (+)-xestoquinone (2), and (+)-adociaquinones A (3) and B (4)^4,5 bearing a naphtha[1,8-bc]furan core (Fig. 1) are the most typical representatives of this family. Naturally occurring (−)-xestosaprol N (5) and O (6)^6,7 have the same structure as 3 and 4 except for a furan ring, while a naphtha[1,8-bc]furan core can also be found in fungus-isolated furanosteroids (−)-viridin (7) and (+)-nodulisporiviridin E (8)^8,9 (Fig. 1). Halenaquinone (1) was first isolated from the tropical marine sponge Xestospongia exigua² and it shows antibiotic activity against Staphylococcus aureus and Bacillus subtilis. Xestoquinone (2) and adociaquinones A (3) and B (4) were firstly isolated, respectively, from the Okinawan marine sponge Xestospongia sp.^4a and the Truk Lagoon sponge Adocia sp.,^4b and they show cardiotonic,^4a,c cytotoxic,^4b,i antifungal,⁴ⁱ antimalarial,^4j and antitumor^4l activities. These compounds inhibit the activity of pp60v-src protein tyrosine kinase,^4d topoisomerases I^4e and II,^4f myosin Ca²⁺ ATPase,^4c,g and phosphatases Cdc25B, MKP-1, and MKP-3.^4h,kOpen in a separate windowFig. 1Structure of halenaquinone-type natural products and viridin-type furanosteroids.Owing to their diverse bioactivities, the synthesis of this family of natural compounds has been extensively studied, with published pathways making use of Diels–Alder,^{3a,d,e,5a–c,e,g} furan ring transfer,^5b Heck,^{3b,c,5f,7,9b,d} palladium-catalyzed polyene cyclization,^5d Pd-catalyzed oxidative cyclization,^3f and hydrogen atom transfer (HAT) radical cyclization^9c reactions. In this study, we report the asymmetric total synthesis of (+)-xestoquinone (2), (−)-xestoquinone (2′), and (+)-adociaquinones A (3) and B (4) (Fig. 1).The construction of the fused tetracyclic B–C–D–E skeleton and the all carbon quaternary stereocenter at C-6 is a major challenge towards the total synthesis of xestoquinone (2) and adociaquinones A (3) and B (4). Based on our retrosynthetic analysis (Scheme 1), the all-carbon quaternary carbon center at C-6 of cis-decalin 12 could first be prepared stereoselectively from the achiral aldehyde 13via an organocatalytic desymmetric intramolecular Michael reaction.^10,11 The tetracyclic framework 10 could then be formed via a Ti(Oi-Pr)₄-promoted photoenolization/Diels–Alder (PEDA) reaction^12–16 of 11 and enone 12. Acid-mediated cyclization of 10 followed by oxidation state adjustment could be subsequently applied to form the furan ring A of xestoquinone (2). Finally, based on the biosynthetic pathway of (+)-xestoquinone (2)^4b,5c and our previous studies,⁷ the heterocyclic ring F of adociaquinones A (3) and B (4) could be prepared from 2via a late-stage cyclization with hypotaurine (9).Open in a separate windowScheme 1Retrosynthetic analysis of (+)-xestoquinone and (+)-adociaquinones A and B.The catalytic enantioselective desymmetrization of meso compounds has been used as a powerful strategy to generate enantioenriched molecules bearing all-carbon quaternary stereocenters.^10,11 For instance, two types of asymmetric intramolecular Michael reactions were developed using a cysteine-derived chiral amine as an organocatalyst by Hayashi and co-workers,^11a,b while a desymmetrizing secondary amine-catalyzed asymmetric intramolecular Michael addition was later reported by Gaunt and co-workers to produce enantioenriched decalin structures.^11c Prompted by these pioneering studies and following the suggested retrosynthetic pathway (Scheme 1), we first screened conditions for organocatalytic desymmetric intramolecular Michael addition of meso-cyclohexadienone 13 (Table 1) in order to form the desired quaternary stereocenter at C-6. Compound 13 was easily prepared on a gram scale via a four-step process (see details in the ESI^†).Attempts of organocatalytic desymmetric intramolecular Michael addition^a

The sporothriolides. A new biosynthetic family of fungal secondary metabolites

The biosynthetic gene cluster of the antifungal metabolite sporothriolide 1 was identified from three producing ascomycetes: Hypomontagnella monticulosa MUCL 54604, H. spongiphila CLL 205 and H. submonticulosa DAOMC 242471. A transformation protocol was established, and genes encoding a fatty acid synthase subunit and a citrate synthase were simultaneously knocked out which led to loss of sporothriolide and sporochartine production. In vitro reactions showed that the sporochartines are derived from non-enzymatic Diels–Alder cycloaddition of 1 and trienylfuranol A 7 during the fermentation and extraction process. Heterologous expression of the spo genes in Aspergillus oryzae then led to the production of intermediates and shunts and delineation of a new fungal biosynthetic pathway originating in fatty acid biosynthesis. Finally, a hydrolase was revealed by in vitro studies likely contributing towards self-resistance of the producer organism.

A new family of fungal biosynthetic pathways is elucidated based on the use of fatty acid and citrate-like intermediates.

Gamma-lactone and alkyl citrate compounds derived from oxaloacetate are widespread natural products in fungi and often possess potent biological activities. Examples include sporothriolide 1,^1,2 piliformic acid 2,³ tyromycin 3⁴ and the cyclic maleidrides including byssochlamic acid 4^5,6 among others (Fig. 1). In some cases, for example those of 4 and squalestatin S1 5,⁷ detailed molecular studies have revealed that a dedicated polyketide synthase (PKS) produces a carbon skeleton that is then condensed with oxaloacetate by a citrate synthase (CS) to give an early alkyl citrate intermediate that is further oxidatively processed. In other cases, such as 1 and the sporochartines 6, the biosynthetic pathways are not yet clear.Open in a separate windowFig. 1Structures of γ-lactone and alkyl citrate metabolites from fungi. Bold bonds show oxaloacetate-derived carbons where known.Sporochartines 6a–6d^8,9 from the fungus Hypoxylon monticulosum CLL 205 (now referred to as Hypomontagnella spongiphila)¹⁰ possesses potent cytotoxicity (IC₅₀: 7.2 to 21.5 μM) vs. human cancer cell lines and are proposed to be Diels Alder (DA) adducts of the furofurandione sporothriolide 1, itself a potent antifungal agent (EC₅₀: 11.6 ± 0.8 μM),¹¹ and trienylfuranol A 7,¹² originally obtained from an endophytic fungus Hypoxylon submonticulosum DAOMC 242471 (now referred to as Hypomontagnella submonticulosa).¹³ Since the biosynthesis of sporothriolide 1 and related compounds is unknown, and biological DA reactions in fungi are currently of high interest,¹⁴ we decided to examine the biosynthesis of the sporochartines 6 in the Hypomontagnella spp. strains MUCL 54604 and CLL 205 (ref. 10 and 13) in detail.     

Multicolor polymeric carbon dots: synthesis,separation and polyamide-supported molecular fluorescence

Multicolor carbon dots (CDs) have been developed recently and demonstrate great potential in bio-imaging, sensing, and LEDs. However, the fluorescence mechanism of their tunable colors is still under debate, and efficient separation methods are still challenging. Herein, we synthesized multicolor polymeric CDs through solvothermal treatment of citric acid and urea in formamide. Automated reversed-phase column separation was used to achieve fractions with distinct colors, including blue, cyan, green, yellow, orange and red. This work explores the physicochemical properties and fluorescence origins of the red, green, and blue fractions in depth with combined experimental and computational methods. Three dominant fluorescence mechanism hypotheses were evaluated by comparing time-dependent density functional theory and molecular dynamics calculation results to measured characteristics. We find that blue fluorescence likely comes from embedded small molecules trapped in carbonaceous cages, while pyrene analogs are the most likely origin for emission at other wavelengths, especially in the red. Also important, upon interaction with live cells, different CD color fractions are trafficked to different sub-cellular locations. Super-resolution imaging shows that the blue CDs were found in a variety of organelles, such as mitochondria and lysosomes, while the red CDs were primarily localized in lysosomes. These findings significantly advance our understanding of the photoluminescence mechanism of multicolor CDs and help to guide future design and applications of these promising nanomaterials.

Understanding the origin and sensitivity of carbon dot emission will improve their utility in various applications.

Since the accidental discovery of luminescent carbon fragments in 2004,¹ carbon dots (CDs) have attracted great research interest due to the diverse synthetic methods, tunable luminescence, and applicability in a broad range of fields, including bio-imaging,^2–4 sensing,^5,6 and light emitting diodes (LEDs).^7,8 Typically, CDs are fluorescent carbon nanostructures of sizes less than 10 nm, composed of carbon, oxygen, and nitrogen.^9–12 CDs can be produced through bottom-up methods, which involve small molecular precursors like citric acid, malic acid, urea, ethylenediamine, and so on.^13–15 In a high temperature reaction, polymerization and dehydration occur among various functional groups, and the resulting products are usually a mixture of small molecule residues, oligomers, and long chain polymers.¹⁶ The unclear fluorescence mechanisms and poorly understood internal structure of CDs limit the ability to understand, tune, and fully exploit their fluorescence properties.Fortunately, in recent years, breakthrough syntheses of multicolor CDs have been achieved.^17–19 Several different multicolor CDs have been synthesized with aromatic compounds such as phenylenediamine.^4,20–22 However, it should be noted that precursors such as aniline and phenol may have toxic effects on human health and the environment,^23,24 and thus should be avoided where possible. Syntheses of colorful CDs from non-aromatic compounds such as citric acid and urea often employ solvothermal methods. Utilizing different solvents such as formamide and dimethylformamide have been shown to play a significant role in tuning CD emission.^25,26 In addition, chromatographic post-treatment of as-made CDs plays a critical role in obtaining different colored fractions, using techniques such as anion-exchange column chromatography,²⁶ normal phase silica chromatography,²⁷ and reversed phase silica chromatography.¹⁵ Compared with high performance liquid chromatography (HPLC), the aforementioned column chromatography techniques help to separate CDs on a larger scale. These separations are based on charge²⁶ or polarity,²¹ and are efficient in isolating the desired fractions with distinct colors so that detailed structural characterization can be performed.To gain insight into the fluorescence mechanism of these multicolor CDs, researchers have considered three hypotheses: quantum size effects,²⁸ the inclusion of molecular fluorophores,²⁹ and surface state-induced emission.³⁰ For example, Rogach and coworkers developed solid-state CDs with tunable fluorescence via the seeded growth method. They attributed the tunable emission to the size of π-conjugated domains.³¹ Yang and coworkers synthesized CDs by hydrothermal treatment of citric acid and ethylenediamine. They identified a small molecule fluorophore, IPCA (1,2,3,5-tetrahydro-5-oxo-imidazo[1,2-α]pyridiine-7-carboxylic acid) from CD column separation fractions, which contributed to the blue fluorescence.¹³ Xiong and coworkers synthesized CDs from urea and p-phenylenediamine that emitted a range of colors and separated them with silica column chromatography. They found the degree of carbon oxidation increased as the emission redshifted and thus, they endorsed the surface state hypothesis.²¹ In addition to the above mechanisms, computational methods such as density functional theory (DFT) have also been applied to analyze the fluorescence origins of CDs. The charge transfer between functional groups on the polymeric unit of CDs made from citric acid and ethylenediamine was found to facilitate blue emission.¹⁶The goal of present work is to understand the fluorescence origin of multicolor CDs. The model multicolor CDs were obtained by reacting citric acid and urea in formamide via a microwave-assisted hydrothermal treatment. An automated chromatographic apparatus was employed to separate as-made CD mixtures into distinct color fractions. The individual separation process took around 20 minutes, and the obtained CD fractions exhibit discrete illumination-induced emission throughout the visible region of the spectrum. Interestingly, the sizes of separated CD fractions are not statistically different from one another, suggesting that the quantum size effects are not the source of differential emission. Solvatochromism experiments showed that the blue and green fractions have similar fluorescence behavior as a function of solvent polarity, but the red fraction behaved differently. Using computational simulations, three models of the fluorescence origin were constructed and evaluated, showing that the formation of small blue fluorescent molecules is likely and pyrene analogs could be the origins for various emission colors. Moreover, two representative CD fractions, the blue- and red-emitting fractions, were chosen for subsequent cell imaging experiments. The localization pattern for the CD fractions differed: blue-emitting CDs were observed in a wide range of organelles, while red-emitting CDs were primarily enclosed in lysosomes. Understanding the origin and the sensitivity of CD emission will improve their utility in bioimaging applications.     

Nitric oxide monooxygenation (NOM) reaction of cobalt-nitrosyl {Co(NO)}8 to CoII-nitrito {CoII(NO2−)}: base induced hydrogen gas (H2) evolution

Here, we report the nitric oxide monooxygenation (NOM) reactions of a Co^III-nitrosyl complex (1, {Co-NO}⁸) in the presence of mono-oxygen reactive species, i.e., a base (OH⁻, tetrabutylammonium hydroxide (TBAOH) or NaOH/15-crown-5), an oxide (O²⁻ or Na₂O/15-crown-5) and water (H₂O). The reaction of 1 with OH⁻ produces a Co^II-nitrito complex {3, (Co^II-NO₂⁻)} and hydrogen gas (H₂), via the formation of a putative N-bound Co-nitrous acid intermediate (2, {Co-NOOH}⁺). The homolytic cleavage of the O–H bond of proposed [Co-NOOH]⁺ releases H₂via a presumed Co^III-H intermediate. In another reaction, 1 generates Co^II-NO₂⁻ when reacted with O²⁻via an expected Co^I-nitro (4) intermediate. However, complex 1 is found to be unreactive towards H₂O. Mechanistic investigations using ¹⁵N-labeled-¹⁵NO and ²H-labeled-NaO²H (NaOD) evidently revealed that the N-atom in Co^II-NO₂⁻ and the H-atom in H₂ gas are derived from the nitrosyl ligand and OH⁻ moiety, respectively.

Base-induced hydrogen (H₂) gas evolution in the nitric oxide monoxygenation reaction.

As a radical species, nitric oxide (NO) has attracted great interest from the scientific community due to its major role in various physiological processes such as neurotransmission, vascular regulation, platelet disaggregation and immune responses to multiple infections.¹ Nitric oxide synthase (NOS),² and nitrite reductase (NiR)³ enzymes are involved in the biosynthesis of NO. NOSs produce NO by the oxidation of the guanidine nitrogen in l-arginine.⁴ However, in mammals and bacteria, NO₂⁻ is reduced to NO by NiRs in the presence of protons, i.e., NO₂⁻ + e⁻ + 2H⁺ → NO + H₂O.⁵ Biological dysfunctions may cause overproduction of NO, and being radical it leads to the generation of reactive nitrogen species (RNS), i.e., peroxynitrite (PN, OONO⁻)⁶ and nitrogen dioxide (˙NO₂),⁷ upon reaction with reactive oxygen species (ROS) such as superoxide (O₂˙⁻),⁸ peroxide (H₂O₂),⁹ and dioxygen (O₂).¹⁰ Hence, it is essential to maintain an optimal level of NO. In this regard, nitric oxide dioxygenases (NODs)¹¹ are available in bio-systems to convert excess NO to biologically benign nitrate (NO₃⁻).¹²NO₂⁻ + Fe^II + H⁺ ↔ NO + Fe^III + OH⁻1[M–NO]ⁿ + 2OH⁻ → [M–NO₂]⁽ⁿ⁻²⁾ + H₂O2NOD enzymes generate NO₃⁻ from NO;^11b,12−13 however, the formation of NO₂⁻ from NO is still under investigation. Clarkson and Bosolo reported NO₂⁻ formation in the reaction of Co^III-NO and O₂.¹⁴ Nam and co-workers showed the generation of Co^II-NO₂⁻ from Co^III-NO upon reaction with O₂˙⁻.¹⁵ Recently, Mondal and co-workers reported NO₂⁻ formation in the reaction of Co^II-NO with O₂.¹⁶ Apart from cobalt, the formation of Cu^II-NO₂⁻ was also observed in the reaction of Cu^I-NO and O₂.¹⁷ For metal-dioxygen adducts, i.e., Cr^III-O₂˙⁻ and Mn^IV-O₂²⁻, NOD reactions led to the generation of Cr^III-NO₂⁻ (ref. 18) and Mn^V O + NO₂⁻,¹⁹ respectively. However, the NOD reaction of Fe^III-O₂˙⁻ and Fe^III-O₂²⁻ with NO and NO⁺, respectively, generated Fe^III-NO₃⁻via Fe^IV O and ˙NO₂.²⁰ Ford suggested that the reaction of ferric-heme nitrosyl with hydroxide leads to the formation of NO₂⁻ and H⁺.¹² Lehnert and co-workers reported heme-based Fe-nitrosyl complexes²¹ showing different chemistries due to the Fe^II-NO⁺ type electronic structures. On the other hand, Bryan proposed that the one-electron reduction of NO₂⁻ to NO in ferrous heme protein is reversible (eqn (1)).²² Also, it is proposed that excess NO in biological systems is converted to NO₂⁻ and produces one equivalent of H⁺ upon reaction with ˙OH.²³ Previously reported reactivity of M–NOs of Fe²⁴ with OH⁻ suggested the formation of NO₂⁻ and one equivalent of H⁺, where H⁺ further reacts with one equivalent of OH⁻ and produces H₂O (eqn (2)).²⁵Here in this report, we explore the mechanistic aspects of nitric oxide monooxygenation (NOM) reactions of the Co^III-nitrosyl complex, [(12TMC)Co^III(NO⁻)]²⁺/{Co(NO)}⁸ (1),^15,26 bearing the 12TMC ligand (12TMC = 1,4,7,10-tetramethyl-1,4,7,10-tetraazacyclododecane) with mono-oxygen reactive species (O²⁻, OH⁻ and H₂O) (Scheme 1). Complex 1 reacts with the base (OH⁻, tetrabutylammonium hydroxide (TBAOH)/or NaOH in the presence of 15-crown-5 as the OH⁻ source) and generates the corresponding Co^II-nitrito complex, [(12TMC)Co^II(NO₂⁻)]⁺ (3), with the evolution of hydrogen gas (H₂) via the formation of a plausible N-bound Co-nitrous acid intermediate ([Co-NOOH]⁺, 2) in CH₃CN at 273 K (Scheme 1, reaction (I)). Also, when 1 reacts with the oxide (O²⁻ or Na₂O in the presence of 15-crown-5), it generates the Co^II-nitrito complex (3) via a probable Co^I-nitro, [(12TMC)Co^I(NO₂⁻)] (4), intermediate (Scheme 1, reaction (II)); however, 1 does not react with water (Scheme 1, reaction (III)). Mechanistic investigations using ¹⁵N-labeled-¹⁵NO, D-labeled-NaOD and ¹⁸O-labelled-¹⁸OH⁻ demonstrated, unambiguously, that the N and O-atoms in the NO₂⁻ ligand of 3 resulted from NO and OH⁻ moieties; however, the H-atoms of H₂ are derived from OH⁻. To the extent of our knowledge, the present work reports the very first systematic study of Co^III-nitrosyl complex reactions with H₂O, OH⁻ and O²⁻. This new finding presents an alternative route for NO₂⁻ generation in biosystems, and also illustrates a new pathway of H₂ evolution, in addition to the reported literature.^12,27Open in a separate windowScheme 1Nitric oxide monooxygenation (NOM) reactions of cobalt-nitrosyl complex (1) in the presence of a base (OH⁻), sodium oxide (Na₂O) and water (H₂O).To further explore the chemistry of [(12TMC)Co^III(NO⁻)]²⁺ (1),^15,26 and the mechanistic insights of NOM reactions, we have reacted it with a base (OH⁻), an oxide (O²⁻), and water (H₂O). When complex 1 was reacted with TBAOH in CH₃CN, the color of complex 1 changed to light pink from dark pink. In this reaction, the characteristic absorption band of 1 (370 nm) disappears within 2 minutes (Fig. 1a; ESI, Experimental section (ES) and Fig. S1a^†), producing a Co^II-nitrito complex, [(12TMC)Co^II(NO₂⁻)]⁺ (3), with H₂ (Scheme 1, reaction (Ib)), in contrast to the previous reports on base induced NOM reactions (eqn (2)).^12,25,28 The spectral titration data confirmed that the ratio-metric equivalent of OH⁻ to 1 was 1 : 1 (ESI, Fig. S1b^†). 3 was determined to be [(12TMC)Co^II(NO₂⁻)](BF₄) based on various spectroscopic and structural characterization experiments (vide infra).^15,26bOpen in a separate windowFig. 1(a) UV-vis spectral changes of 1 (0.50 mM, black line) upon addition of OH⁻ (1 equiv.) in CH₃CN under Ar at 273 K. Black line (1) changed to red line (3) upon addition of OH⁻. Inset: IR spectra of 3-¹⁴NO₂⁻ (blue line) and 3-¹⁵NO₂⁻ (red line) in KBr. (b) ESI-MS spectra of 3. The peak at 333.2 is assigned to [(12TMC)Co^II(NO₂)]⁺ (calcd m/z 333.1). Inset: isotopic distribution pattern for 3-¹⁴NO₂⁻ (red line) and 3-¹⁵NO₂⁻ (blue line).The FT-IR spectrum of 3 showed a characteristic peak for nitrite stretching at 1271 cm⁻¹ (Co^II-14NO₂⁻) and shifted to 1245 cm⁻¹ (Co^II-15NO₂⁻) when 3 was prepared by reacting ¹⁵N-labeled NO (Co^III-15NO) with OH⁻ (Inset, Fig. 1a and Fig. S2^†). The shifting of NO₂⁻ stretching (Δ = 30 cm⁻¹) indicates that the N-atom in the NO₂⁻ ligand is derived from Co^III-15NO. The ESI-MS spectrum of 3 showed a prominent peak at m/z 333.2, [(12TMC)Co^II(¹⁴NO₂⁻)]⁺ (calcd m/z 333.2), which shifted to 334.2, [(12TMC)Co^II(¹⁵NO₂⁻)]⁺ (calcd m/z 334.2), when the reaction was performed with Co^III-15NO (Inset, Fig. 1b; ESI, Fig. S3a^†); indicating clearly that NO₂⁻ in 3 was derived from the NO moiety of 1. In addition, we have reacted 1 with Na¹⁸OH (ES and ESI^†), in order to follow the source of the second O-atom in 3-NO₂⁻. The ESI-MS spectrum of the reaction mixture, obtained by reacting 1 with Na¹⁸OH, showed a prominent peak at m/z 335.2, [(12TMC)Co^II(¹⁸ONO⁻)]⁺ (calcd m/z 335.2), (SI, Fig. S3b^†) indicating clearly that NO₂⁻ in 3 was derived from ¹⁸OH⁻. The ¹H NMR spectrum of 3 did not show any signal for aliphatic protons of the 12TMC ligand, suggesting a bivalent cobalt center (Fig. S4^†).^26b Furthermore, we have determined the magnetic moment of 3, using Evans'' method, and it was found to be 4.62 BM, suggesting a high spin Co(ii) metal center with three unpaired electrons (ESI^† and ES).²⁹ The exact conformation of 3 was provided by single-crystal X-ray crystallographic analysis (Fig. 2b, ESI, ES, Fig. S5, and Tables T1 and T2^†) and similar to that of previously reported Co^II-NO₂⁻/M^II-NO₂⁻.^15,26b Also, we have quantified the amount of nitrite (90 ± 5%), formed in the above reaction, using the Griess reagent (ESI, ES, and Fig. S6^†).Open in a separate windowFig. 2Displacement ellipsoid plot (20% probability) of 3 at 100 K. Disordered C-atoms of the TMC ring, anion and H-atoms have been removed for clarity.As is known from the literature, a metal-nitrous acid intermediate may form either by the reaction of a metal-nitrosyl with a base²⁷ or by the metal-nitrite reaction with an acid (nitrite reduction chemistry);^26b however, the products of both the reactions are different. Here, for the first time, we have explored the reaction of Co^III-nitrosyl (1) with a base. In this reaction, it is clear that the formation of Co^II-nitrito would be accomplished by the release of H₂ gas via the generation of a transient N-bound [Co-(NOOH)]⁺ intermediate (Scheme 2, reaction (II)). The formation of Co^II-NO₂⁻ (3) from the [Co-(NOOH)]⁺ intermediate is likely to proceed by either (i) homolytic cleavage of the O–H bond and release of H₂via the proposed Co^III-H transient species (Co^III-H = Co^II + 1/2H₂)³⁰ (Scheme 2, reaction (III)), as reported in previous literature where the reduced cobalt, in a number of different ligand environments, is a good H⁺ reduction catalyst and generates H₂ gas via a Co^III-H intermediate³¹ or (ii) heterolytic cleavage of the O–H bond and the formation of Co^I-NO₂⁻ + H⁺.²⁷ In the present study, we observed the formation of 3 and H₂via the plausible homolytic cleavage of the NOO–H moiety of 2 as shown in Scheme 2, in contrast to the previous reports on base-induced reactions on metal-nitrosyls (eqn (3)).²⁷ Taking together both possibilities, (i) is the most reasonable pathway for the NOM reaction of complex 1 in the presence of a base (as shown in Scheme 2, reaction (III)). And the reaction is believed to go through a Co^III-H intermediate as reported previously in Co^I-induced H⁺ reduction in different ligand frameworks and based on literature precedence, we believe that complex 1 acts in a similar manner.³¹Open in a separate windowScheme 2NOM reaction of complex 1 in the presence of OH⁻, showing the generation of Co^II-nitrito (3) and H₂via a Co(iii)-hydrido intermediate.In contrast to an O-bound Co^II-ONOH intermediate, where N–O bond homolysis of the ON-OH moiety generates H₂O₂ (Scheme 2, reaction (IV)),^26b the N-bound [Co-(NOOH)]⁺ intermediate decomposes to form NO₂⁻ and a Co(iii)-H transient species, arising from β-hydrogen transfer from the NOO–H moiety to the cobalt-center (Scheme 2, reaction (II)).^30a,c,32 The Co(iii)-hydrido species may generate H₂ gas either (a) by its transformation to the Co(ii)-nitrito complex (2) and H₂ gas as observed in the case of Co^III-H intermediate chemistry^30a,c,e−g as proposed in the chemistry of the Co^I complex with H⁺ reduction³¹ and other metal-hydrido intermediates³² and also explained in O₂ formation in PN chemistry^17,33 or (b) by the reacting with another [Co-(NOOH)]⁺ intermediate (Scheme 2, reaction (III)).Furthermore, we have confirmed the H₂ formation in the NOM reaction of 1 with OH⁻ by headspace gas mass spectrometry (Fig. 3a). Also, carrying out the reaction of 1 with NaOD leads to the formation of the [Co-(NOOD)]⁺ intermediate, which then transforms to a Co^III-D transient species. Further, as described above, the Co^III-D species releases D₂ gas, detected by headspace gas mass spectrometry (Fig. 3b), which evidently established that H₂ gas formed in the reaction of 1 with OH⁻. In this regard, we have proposed that in the first step of this reaction, the nucleophilic addition of OH⁻ to {Co-NO}⁸ generates a transient N-bound [Co-(NOOH)]⁺ intermediate that is generated by an internal electron transfer to Co^III (Scheme 2, reaction (I)). By following the mechanism proposed in the case of Co^III-H,^30a−c O₂,¹⁵ and H₂O₂(ref. 26b) formation, we have proposed the sequences of the NOM reaction of 1, which leads to the generation of Co^II-nitrito and H₂ (Scheme 2, reaction (I)–(III) and Scheme 3). In the second step, O–H bond homolytic cleavage generates a Co^III-H transient species + NO₂⁻via a β-hydrogen elimination reaction of the [Co-(NOOH)]⁺ intermediate.³² The Co^III-H intermediate may undergo the following reactions to generate H₂ gas and Co^II-nitrito either (a) by the natural decomposition of the Co^III-H transient species to generate H₂,^30a,c,e−g or (b) by the H-atom abstraction from another [Co-(NOOH)]⁺ intermediate (Scheme 3). Also, to validate our assumption that the reaction goes through a plausible N-bound [Co-(NOOH)]⁺ intermediate followed by its transformation to the Co^III-H species (vide supra), we have performed the reaction of 1 with NaOH/NaOD (in 1 : 1 ratio). In this reaction, we have observed the formation of a mixture of H₂, D₂, and HD gases, which indicates clearly that the reaction goes through the formation of Co^III-H and Co^III-D transient species via the aforementioned mechanism (Fig. 3c). This is the only example where tracking of the H atoms has confirmed the H₂ generation from an N-bound NOO–H moiety as proposed for H₂ formation from Co^III-H.³⁰Open in a separate windowFig. 3Mass spectra of formation of (a) H₂ in the reaction of 1 (5.0 mM) with NaOH (5.0 mM), (b) D₂ in the reaction of 1 (5.0 mM) with NaOD (5.0 mM), (c) D₂, HD, and H₂ in the reaction of 1 (5.0 mM) with NaOD/NaOH (1 : 1), and (d) H₂ in the reaction of 1 (5.0 mM) with NaOH in the presence of 2,4 DTBP (50 mM).Open in a separate windowScheme 3NOM reaction of complex 1 in the presence of OH⁻, showing the different steps of the reaction.While, we do not have direct spectral evidence to support the formation of the transient N-bound [Co-(NOOH)]⁺ intermediate and its decomposition to the Co^III-H transient species via β-hydrogen transfer from the NOOH moiety to the cobalt center, support for its formation comes from our finding that the reactive hydrogen species can be trapped by using 2,4-di-tert-butyl-phenol (2,4-DTBP).³⁴ In this reaction, we observed the formation of 2,4-DTBP-dimer (2,4-DTBP-D, ∼67%) as a single product (ESI, ES, and Fig. S7^†). This result can readily be explained by the H-atom abstraction reaction of 2,4-DTBP either by [Co-(NOOH)]⁺ or Co^III-H, hence generating a phenoxyl-radical and 3 with H₂ (Fig. 3d and Scheme 2, reaction (a)). Also, we have detected H₂ gas formation in this reaction (ESI,^† ES, and Fig. 3d). In the next step, two phenoxyl radicals dimerized to give 2,4-DTBP-dimer (Scheme 2c, reaction (II)). Thus, the observation of 2,4-DTBP-dimer in good yield supports the proposed reaction mechanism (Scheme 2, reaction (a) and (b)). Further, the formation of 2,4 DTBP as a single product also rules out the formation of the hydroxyl radical as observed in the case of an O-bound nitrous acid intermediate.^26bFurthermore, we have explored the NOM reactivity of 1 with Na₂O/15-crown-5 (as the O²⁻ source) and observed the formation of the Co^II-nitrito complex (3) via a plausible Co^I-nitro (4) intermediate (Scheme 1, reaction (IIa); also see the ESI^† and ES); however, 1 was found to be inert towards H₂O (Scheme 1, reaction (III); also see the ESI, ES and Fig. S8^†). The product obtained in the reaction of 1 with O²⁻ was characterized by various spectroscopic measurements.^15,26b The UV-vis absorption band of 1 (λ_max = 370 nm) disappears upon the addition of 1 equiv. of Na₂O and a new band (λ_max = 535 nm) forms, which corresponds to 3 (ESI, Fig. S9^†). The FT-IR spectrum of the isolated product of the above reaction shows a characteristic peak for Co^II-bound nitrite at 1271 cm⁻¹, which shifts to 1245 cm⁻¹ when exchanged with ¹⁵N-labeled-NO (¹⁵N¹⁶O) (ESI, ES, and Fig. S10^†), clearly indicating the generation of nitrite from the NO ligand of complex 1.^26b The ESI-MS spectrum recorded for the isolated product (vide supra) shows a prominent ion peak at m/z 333.1, and its mass and isotope distribution pattern matches with [(12-TMC)Co^II(NO₂)]⁺ (calc. m/z 333.1) (ESI, Fig. S11^†). Also, we quantified the amount of 3 (85 ± 5%) by quantifying the amount of nitrite (85 ± 5%) using the Griess reagent test (ESI, ES, and Fig. S6^†).In summary, we have demonstrated the reaction of Co^III-nitrosyl, [(12-TMC)Co^III(NO⁻)]²⁺/{CoNO}⁸ (1), with mono-oxygen reactive species (O²⁻, OH⁻ and H₂O) (Scheme 1). For the first time, we have established the clear formation of a Co^II-nitrito complex, [(12TMC)Co^II(NO₂⁻)]⁺ (3), and H₂ in the reaction of 1 with one equivalent of OH⁻via a transient N-bound [Co-(NOOH)]⁺ (2) intermediate. This [Co-(NOOH)]⁺ intermediate undergoes the O–H bond homolytic cleavage and generates a Co^III-H transient species with NO₂⁻, via a β-hydrogen elimination reaction of the [Co-(NOOH)]⁺ intermediate, which upon decomposition produces H₂ gas. This is in contrast to our previous report, where acid-induced nitrite reduction of 3 generated 1 and H₂O₂via an O-bound Co^II-ONOH intermediate.^26b Complex 1 was found to be inert towards H₂O; however, we have observed the formation of 3 when reacted with O²⁻. It is important to note that H₂ formation involves a distinctive pathway of O–H bond homolytic cleavage in the [Co-(NOOH)]⁺ intermediate, followed by the generation of the proposed Co^III-H transient species (Co^II + 1/2H₂)³⁰ prior to H₂ evolution as described in Co^I chemistry with H⁺ in many different ligand frameworks.³¹ The present study is the first-ever report where the base induced NOM reaction of Co^III-nitrosyl (1) leads to Co^II-nitrito (3) with H₂ evolution via an N-bound [Co-(NOOH)]⁺ intermediate, in contrast to the chemistry of O-bound Co^II-ONOH^26b, hence adding an entirely new mechanistic insight of base induced H₂ gas evolution and an additional pathway for NOM reactions.     

S(vi) in three-component sulfonamide synthesis: use of sulfuric chloride as a linchpin in palladium-catalyzed Suzuki–Miyaura coupling

Sulfuric chloride is used as the source of the –SO₂– group in a palladium-catalyzed three-component synthesis of sulfonamides. Suzuki–Miyaura coupling between the in situ generated sulfamoyl chlorides and boronic acids gives rise to diverse sulfonamides in moderate to high yields with excellent reaction selectivity. Although this transformation is not workable for primary amines or anilines, the results show high functional group tolerance. With the solving of the desulfonylation problem and utilization of cheap and easily accessible sulfuric chloride as the source of sulfur dioxide, redox-neutral three-component synthesis of sulfonamides is first achieved.

Sulfuric chloride is used as the source of the –SO₂– group in a palladium-catalyzed three-component synthesis of sulfonamides.

Since its development in the 1970s,¹ Suzuki–Miyaura coupling has become a widely used synthetic step in diverse areas. With two of the most widely sourced materials, organoborons and alkyl/aryl halides, a number of C–C coupling reactions are established and the Suzuki–Miyaura reaction has successfully acted as the key step in the synthesis of medicines and agrochemicals.²In addition to the well-known aryl halides and esters, various other substrates such as acid chlorides,³ anhydrides,⁴ diazonium salts⁵ and sulfonyl chlorides⁶ were also reported for the coupling in the past decades. As far as acid chlorides are concerned, carbamoyl chlorides were successfully transformed to the corresponding benzamides in the early years of the 21st century.⁷ However, the use of sulfamoyl chlorides as coupling partners is challenging due to the strong electron-withdrawing properties of the sulfonyl group, which cause the tendency of desulfonylation to form tertiary amines.Synthesis of sulfonyl-containing compounds, especially sulfones and sulfonamides, via the insertion of sulfur dioxide has been extensively studied during the last decade.⁸ A series of sulfur-containing surrogates have been developed as the source of the –SO₂– group. Willis and co-workers first reported the use of DABCO·(SO₂)₂, a bench-stable solid adduct of DABCO and gaseous SO₂ discovered by Santos and Mello,^9a as the source of sulfur dioxide in the synthesis of sulfonylhydrazines.^9b Soon after, alkali metal metabisulfites were found to provide sulfur dioxide for the formation of sulfonyl compounds.¹⁰ In the recent developments in this field, DABCO·(SO₂)₂ and metabisulfites have become the most popular SO₂ surrogates for the insertion of sulfur dioxide.⁸ However, the practical applications of sulfur dioxide insertion reactions are limited by atom-efficiency problems and the unique properties of reactants. For instance, the three-component synthesis of aryl sulfonylhydrazines using aryl halides, SO₂ surrogates and hydrazines by a SO₂-doped Buchward–Hartwig reaction was realized in the earliest developments in this field.¹⁰ However, similar transformations from aryl halides and amines to the corresponding sulfonamides still remain unresolved (Scheme 1a).^11,12Open in a separate windowScheme 1Synthetic approaches to sulfonamides.In order to provide a simple and efficient method for the three-component synthesis of aryl sulfonamides without the pre-synthesis of sulfonyl chlorides, many scientists have made various attempts. Interestingly, the use of arylboronic acids instead of aryl halides provided an alternative route. An oxidative reaction between boronic acids, DABCO·(SO₂)₂ and amines for the preparation of aryl sulfonamides at high temperature was realized,¹² while reductive couplings of boronic acids, SO₂ surrogates and nitroarenes were also reported (Scheme 1b).¹³ However, due to the reversed electronic properties of boronic acids from halides, additional additives and restrictions had to be considered. Extra oxidants and harsh conditions were usually used, and some of the transformations required “oxidative” substrates, such as nitroarenes and chloroamines.¹⁴Early in 2020, a reductive hydrosulfonamination of alkenes by sulfamoyl chlorides was reported,¹⁵ which gave us the inspiration to use in situ generated sulfamoyl chlorides as the electrophile for the synthesis of aryl sulfonamides by Suzuki–Miyaura coupling. In this way, sulfamoyl chlorides could be formed by nucleophilic substitution of an amine to sulfuric chloride, and the S(vi) central atom introduced into the reaction could reverse the electronic properties of the amine, which would eliminate the addition of oxidants (Scheme 1c). With the utilization of boronic acids as the coupling partner, a palladium-catalyzed Suzuki–Miyaura coupling could provide the sulfonamide products. Compared with traditional attempts, reversing the electronic properties of an amine from nucleophilic to electrophilic could reverse the whole reaction process, and two-step synthesis starting from the amine side could bypass the existing difficulty of S–N bond forming reductive elimination.¹² Instead, a C–S bond formation could be the key for success (Scheme 2). In this proposed route, the presence of a base would be essential to remove the acid generated in situ during the reaction process. Additionally, we expected that the addition of a ligand would improve the oxidative addition of Pd(0) to sulfamoyl chloride, thus leading to the desired sulfonamide product.Open in a separate windowScheme 2Comparison between the traditional route and designed work.As designed based on our assumption, we used a commercialized sulfamoyl chloride intermediate A, which would be generated from morpholine 1a and SO₂Cl₂, to start our early investigations. The results showed that the direct Suzuki–Miyaura coupling of sulfamoyl chloride intermediate A and 2-naphthaleneboronic acid 2a mostly led to the generation of byproduct 3a′ with traditional phosphine ligands added to the reaction, and the desired product 3a was obtained in poor yields (Table 1, entries 1 and 2). It is known that an electron-rich ligand would enhance the oxidative addition of Pd(0) to the electrophile, and the bulky factor would facilitate the reductive elimination process. As expected, the yield of product 3a was increased significantly when electron-rich and bulky tris-(2,6-dimethoxyphenyl)phosphine was used as the ligand (Table 1, entry 3). Moreover, the reaction could proceed more efficiently by using a mixture of THF and MeCN as the co-solvent (Table 1, entry 4).Early investigations using morpholine-4-sulfonyl chloride A as the starting material

Ruthenium-catalyzed formal sp3 C–H activation of allylsilanes/esters with olefins: efficient access to functionalized 1,3-dienes

Ru-catalysed oxidative coupling of allylsilanes and allyl esters with activated olefins has been developed via isomerization followed by C(allyl)–H activation providing efficient access to stereodefined 1,3-dienes in excellent yields. Mild reaction conditions, less expensive catalysts, and excellent regio- and diastereoselectivity ensure universality of the reaction. In addition, the unique power of this reaction was illustrated by performing the Diels–Alder reaction, and enantioselective synthesis of highly functionalized cyclohexenone and piperidine and finally synthetic utility was further demonstrated by the efficient synthesis of norpyrenophorin, an antifungal agent.

Ru-catalysed oxidative coupling of allylsilanes and allyl esters with activated olefins has been developed via isomerization followed by C(allyl)–H activation providing efficient access to stereodefined 1,3-dienes in excellent yields.

1,3-Dienes not only are widespread structural motifs in biologically pertinent molecules but also feature as a foundation for a broad range of chemical transformations.^1–14 Indeed, these conjugated dienes serve as substrates in many fundamental synthetic methodologies such as cycloaddition, metathesis, ene reactions, oxidoreduction, or reductive aldolization. It is well-understood that the geometry of olefins often influences the stereochemical outcome and the reactivity of reactions involving 1,3-dienes.¹⁵ Hence, a plethora of synthetic methods have been developed for the stereoselective construction of substituted 1,3-dienes.^16–24 The past decade has witnessed a huge advancement in the field of metal-catalyzed C–H activation/functionalization.^25–27 Although, a significant amount of work in the field of C(alkyl)–H and C(aryl)–H activation has been reported; C(alkenyl)–H activation has not been explored conspicuously, probably due to the complications caused by competitive reactivity of the alkene moiety, which can make chemoselectivity a significant challenge. Over the past few years, several different palladium-based protocols have been developed for C(alkenyl)–H functionalization, but the reactions are generally limited to employing conjugated alkenes, such as styrenes,^28–31 acrylates/acrylamides,^32–36 enamides,³⁷ and enol esters/ethers.^38,39 To date, only a few reports have appeared in the literature for expanding this reactivity towards non-conjugated olefins, which can be exemplified by camphene dimerization,⁴⁰ and carboxylate-directed C(alkenyl)–H alkenylation of 1,4-cyclohexadienes.⁴¹ In 2009, Trost et al. reported a ruthenium-catalyzed stereoselective alkene–alkyne coupling method for the synthesis of 1,3-dienes.⁴² The same group also reported alkene–alkyne coupling for the stereoselective synthesis of trisubstituted ene carbamates.⁴³ A palladium catalyzed chelation control method for the synthesis of dienes via alkenyl sp² C–H bond functionalization was described by Loh et al.⁴⁴ Recently, Engle and coworkers reported an elegant approach for synthesis of highly substituted 1,3-dienes from two different alkenes using an 8-aminoquinoline directed, palladium(ii)-mediated C(alkenyl)–H activation strategy.⁴⁵ Allyl and vinyl silanes are known as indispensable nucleophiles in synthetic chemistry.⁴⁶ Alder ene reactions of allyl silanes with alkynes are reported for the synthesis of 1,4-dienes.⁴⁷ Innumerable methods are known for the preparation of both allyl and vinyl silanes^48–52 but limitations are associated with many of the current protocols, which impedes the synthesis of unsaturated organosilanes in an efficient manner. Silicon-functionalized building blocks are used as coupling partners in the Hiyama reaction⁵³ and are easily converted into iodo-functionalized derivatives (precursor for the Suzuki cross-coupling reaction), but there is little attention given for the synthesis of functionalized vinyl silanes. Herein, we report a general approach for the stereoselective synthesis of trisubstituted 1,3-dienes by the Ru-catalyzed C(sp³)–H functionalization reaction of allylsilanes (Scheme 1).Open in a separate windowScheme 1Highly stereoselective construction of 1,3-dienes.In 1993, Trost and coworkers reported an elegant method for highly chemoselective ruthenium-catalyzed redox isomerization of allyl alcohols without affecting the primary and secondary alcohols and isolated double bonds.^54,55 Inspired by the potential of ruthenium for such isomerization of double bonds in allyl alcohols, we sought to identify a ruthenium-based catalytic system that can promote isomerization of olefins in allylsilanes followed by in situ oxidative coupling with an activated olefin to form substituted 1,3-dienes. We initiated our studies by choosing trimethylallylsilane 1a and acrylate 2a by using a commercially available [RuCl₂(p-cymene)]₂ catalyst in the presence of AgSbF₆ as an additive and co-oxidant Cu(OAc)₂ in 1,2-DCE at 100 °C. Interestingly, it resulted into direct formation of (2E,4Z)-1,3-diene 3aa as a single isomer in 55% yield. It is likely that this reaction occurs by C(allyl)–H activation of the π-allyl ruthenium complex followed by oxidative coupling with the acrylate and leaving the silyl group intact (Table 1). π-Allyl ruthenium complex formation may be highly favorable due to the α-silyl effect which stabilizes the carbanion forming in situ in the reaction.⁵⁶ Next, the regioselective C–H insertion of vinyl silanes could be controlled by stabilization of the carbon–metal (C–M) bond in the α-position to silicon. This stability arises due to the overlapping of the filled carbon–metal orbital with the d orbitals on silicon or the antibonding orbitals of the methyl–silicon (Me–Si) bond.⁵⁷ The stereochemistry of the diene was established by 1D and 2D spectroscopic analysis of the compound 3aa. To quantify the C–H activation mediated coupling efficiency, an extensive optimization study was conducted (allylsilanes followed by in situ oxidative coupling with an activated olefin to form substituted 1,3-dienes). The change of solvents from 1,2-DCE to t-AmOH, DMF, dioxane, THF or MeCN did not give any satisfactory result, rather a very sluggish reaction rate or decomposition of starting materials was observed in each case (entry 2–6).Optimization of reaction conditions^a

Multiple rotational rates in a guest-loaded,amphidynamic zirconia metal–organic framework

Amphidynamic motion in metal–organic frameworks (MOFs) is an intriguing emergent property, characterized by high rotational motion of the phenylene rings that are embedded within an open, rigid framework. Here, we show how the phenylene rings in the organic linkers of the water stable MOF PEPEP-PIZOF-2 exhibit multiple rotational rates as a result of the electronic structure of the linker, with and without the presence of highly interacting molecular guests. By selective ²H enrichment, we prepared isotopologues PIZOF-2d4 and PIZOF-2d8 and utilized solid-state ¹³C and ²H NMR to differentiate the dynamic behavior of specific phenylenes in the linker at room temperature. A difference of at least one order of magnitude was observed between the rates of rotation of the central and outer rings at room temperature, with the central phenylene ring, surrounded by ethynyl groups, undergoing ultrafast 180° jumps with frequencies higher than 10 MHz. Moreover, loading tetracyanoquinodimethane (TCNQ) within the pores produced significant changes in the MOF''s electronic structure, but very small changes were observed in the rotational rates, providing an unprecedented insight into the effects that internal dynamics have on guest diffusion. These findings would help elucidate the in-pore guest dynamics that affect transport phenomena in these highly used MOFs.

Zirconia based metal–organic framework PEPEP-PIZOF-2 exhibits the emergent property of amphidynamic motion with organic links that show multiple rotational rates related to their molecular structure and independently from presence of molecular guests.

Amphidynamic crystals are an emerging class of materials made of molecular components that exhibit fast internal motion within a rigid lattice.^1,2 Metal–organic frameworks (MOFs) can be considered as intrinsically amphidynamic materials, because they are formed by the assembly of organic molecules that carry high degrees of freedom linked to inorganic clusters that form an extended solid matrix.³ This assembly allows for the organic components to behave like rotators, while the solid matrix/framework acts as a stator, with gyroscope-type motion enabled by the open architecture of the MOF with motion modulated by the molecular structure of the linker.^4–6 In order to create materials with targeted dynamic properties for real-life applications, like molecular machines, it is important to determine whether the chemical environment of the linkers can produce dynamics at multiple rates and how the presence of molecular guests affect such dynamics. To do so, it is important to use MOFs that are chemically stable to water and humidity, because this robustness increases the reproducibility of the results and the applicability of the MOF. The interplay between guest diffusion, linker dynamics and the overall framework flexibility has been actively investigated in recent years.⁷Here, we prepared a water-stable MOF, PEPEP-PIZOF-2 (Fig. 1a), strategically labelled with deuterium atoms to probe the multiple segmental motion in the pristine and guest-loaded materials. Utilizing solid-state NMR techniques, we elucidated that this MOF exhibits bimodal rotational rates, with the central ring of the linker having free rotation above the 10 MHz limit of quantitation, and with the outer rings having slower rotation. This double-rate internal dynamics is preserved even in the presence of a very “sticky,” electron-deficient guest such as tetracyanoquinodimethane, TCNQ. Studying the molecular dynamics of this class of MOFs helps in accelerating their use as applied materials and for the fundamental studies of transfer phenomena that occur in MOFs such as mass, heat, and momentum transfer.Open in a separate windowFig. 1(a) Crystal structure of the double interweaved MOF PIZOF-2, showing each framework in separate colors. (b) Molecular structure of the PEPEP link. (c) Deuterium enriched linkers used in this study emphasizing the deuterium location in the link and the different chemical environments.Zirconia MOFs have been shown to exhibit unprecedented chemical stability, of which the family of Porous Interpenetrated Zirconia Organic Frameworks (PIZOFs) features superior stability combined with a unique molecular composition of their linkers.^8,9 The linkers in PIZOF MOFs are linear and made by a combination of phenylene rings and ethynylene groups, where multiple chemical environments can be created around the phenylenes, thus altering their rotational behavior. Of the series, PEPEP-PIZOF-2 (hereafter PIZOF-2) is a high symmetry interweaved MOF (interweaved = interpenetrated with minimally displaced frameworks^10,11) made with linkers that contain three phenylenes (P) and two ethynylenes (E) in an alternating form (hence PEPEP, Fig. 1b), creating two different types of chemical and crystallographic environments around the rotor moieties: the central phenylene ring is surrounded by two alkyne groups that provide a negligible electronic barrier for rotation and two outer phenylene rings surrounded by an alkyne and a carboxylate. So, we expect to observe significant differences in dynamics for each component of the linker.¹² To properly observe the gyroscope-like rotation, protons were replaced with deuterons either in the inner ring (PIZOF-2d4, Fig. 1c) or in the outer rings (PIZOF-2d8, Fig. 1c). These two modes of isotopic labeling allowed the isolation of each ring to study of their dynamics by ²H NMR.Samples of the PIZOF-2 MOF containing natural and isotopically enriched PEPEP links were prepared from adapted published procedures (ESI^†).¹³ The MOFs were prepared via solvothermal crystallization of the respective linkers in DMF in the presence of ZrCl₄ and proline-HCl at 120 °C for 24 h, resulting in crystalline powder samples of formula Zr₆O₄(OH)₄[PEPEP]₆, Zr₆O₄(OH)₄[PEPEP-d4]₆, and Zr₆O₄(OH)₄[PEPEP-d8]₆. Powder X-ray diffraction (PXRD) patterns of all three isotopologues exhibited sharp diffraction lines starting at 3.84° 2θ (CuKα radiation) characteristic of the cubic PIZOF-2 MOF phase (Fd$\bar{3}$m space group symmetry) (Fig. 2a).¹⁴ Phase purity was assessed using Rietveld refinement of the experimental patterns using the single crystal unit cell data resulting in phase pure samples with low residuals (Fig. S1–S4^†).Open in a separate windowFig. 2(a) Powder X-ray diffraction of the natural and isotopically enriched PIZOF-2 MOFs demonstrating their isoreticular nature. Miller indices of the most intense peaks are indicated. (b) ¹³C CPMAS NMR spectra of natural and isotopically enriched PIZOF-2 MOFs.The internal structure of the MOFs was analyzed using ¹³C Cross-Polarization with Magic Angle Spinning (CP MAS) NMR spectroscopy, where the intensities of ¹³C signals varied according to the level of deuteration of the linker in each MOF (Fig. 2b). PIZOF-2 exhibits a ¹³C spectrum with signals at around 92 ppm, corresponding to the internal ethynyl, signals between 120 and 140 ppm corresponding to the phenylene carbons, and signals at 173 ppm that correspond to carboxylates, consistent with the expected structure. In PIZOF-2d4 the signals that correspond to the central phenylene ring are attenuated (Fig. 2b, signal 8) compared to the natural material, whereas in PIZOF-2d8, the only visible signals are those of the central ring, due to the absence of vicinal protons required for CP. Peaks associated with solvents and other reagents were not observed indicating a successfully evacuated framework, which in addition to high crystallinity and the magnetic field produces changes in the spectral line shape that can be associated with different types of motion.¹⁵ In the case of the PIZOF MOFs, the differences in the molecular substructure and porosity ensured having optimal samples for dynamic studies. Despite being double interweaved, the distances between centroids of the aromatic rings of the interpenetrating frameworks have values in the range of 6.23 Å to 8.04 Å (Fig. S7^†). Considering that the volume of revolution of the phenylene is ca. 6 Å, significant changes in the internal rotational dynamics caused by interpenetration were ruled out. Besides, it is expected that the phenylene rings have sufficient space to undergo fast rotational displacement, as it has been observed in other MOFs.¹⁶ To determine this, the deuterated samples were studied using solid-state quadrupolar echo ²H NMR spectroscopy. The reorientation of the C–²H bond vectors with respect to the external between outer and inner rings is expected to afford different rotational rates.The ²H NMR line shape at room temperature of PIZOF-2d8 displays signals characteristic of motions in the intermediate exchange regime. A successful fitting of the spectrum using NMRweblab¹⁷ was obtained using a model that assumed two-fold flip jumps, indicating a rotational rate at room temperature of the outer rings of k_rot = 2.10 MHz (Fig. 3 top). The rate of rotation of the deuterated outer rings is similar to that reported in UiO-66(Zr)¹⁸ (k_rot = 2.3 MHz at rt) and much larger than that of other simple MOFs like MOF-5(Zn),¹²MIL-47(V),¹⁹ and MIL-53(Cr)¹⁹ (k_rot < 0.001 MHz at rt). The rotation of the outer rings could be then regulated by the electronic conjugation of the phenylene with the carboxylates and/or affected by the interactions with the metal oxide clusters.Open in a separate windowFig. 3Experimental (blue) and calculated (orange) deuterium line shapes of PIZOF-2 at 295 K: (top) PIZOF-2d8 and (bottom) PIZOF-2d4.Conversely, in the case of PIZOF-2d4 (Fig. 3 bottom) the narrow ²H NMR spectrum is characteristic of ultrafast reorientations about the –C C– axis. A fitting of the spectrum was carried out assuming fast 180° jumps and large amplitude vibrations, indicating a rate of rotation of k_rot > 10 MHz, the upper limit of the ²H NMR sensitivity, so at 295 K the inner rings are rotating freely. This rate correlates with the minimal electronic barrier given by the flanking alkynes as has also been observed in a Zn-pyrazolate MOF that contains the same diethynyl-phenylene-diethynyl moiety.¹⁶ To date, this is the first time a MOF exhibits multiple rotational rates of their phenylene rings, which has implications for understanding and improving guest-diffusion related phenomena such as guest storage, catalysis, and separations.As the transport of guests throughout the MOF would be affected by the interactions between the guest and the static and dynamic components of the framework, we impregnated deuterated PIZOF-2 samples with tetracyanoquinodimethane (TCNQ). Given the electron-rich nature of the linker, electron deficient TCNQ was selected because it fits into the pores and has a high propensity to form strong π–π stacking bonds, often in the form of charge transfer complexes.²⁰ In other words, TCNQ is a very sticky molecule known to affect the electronic structure of MOFs and has been used as an additive to enhance their charge conduction properties for device applications.^21,22The incorporation of TCNQ into the MOF was performed by immersing MOF powder samples in CH₂Cl₂ solutions for a minimum of 6 h at 295 K followed by rinsing, resulting in a loading capacity of 28.6 ± 0.2 TCNQ molecules per unit cell. At this saturated state, the white crystals changed to a green color and showed a strong EPR signal with g = 2.0025 (Fig. S8c^†), compared to the pristine MOF. This could be attributed to a charge transfer event that produces organic radicals which overshadows the intrinsic paramagnetism of the zirconia oxoclusters.²³ We also observed a quench of the emission, with a significant change in the quantum yield from Φ_F = 8.5% to Φ_F < 0.1% (Fig. S8d^†). Fluorescence quenching was expected due to the interaction of electron deficient molecules with the conjugated oligo-phenylene-ethynylene linkers that make the MOF emissive.²⁴The ¹³C CPMAS spectrum of TCNQ loaded PIZOF-2d4 not only confirmed the guest within the pores (Fig. S12^†), but it also revealed the changes in the chemical environment around the linkers: the appearance of a second carboxylate signal around δ = 174 ppm and a second quaternary carbon signal around δ = 128 ppm, with higher intensities with an increased loading time (Fig. 4a), attributable to the interaction of TCNQ with the outer rings of the PEPEP links, closer to the Zr cluster. Surprisingly, despite the evidence of the diffusion of TCNQ into the MOF, the solid-state ²H NMR spectrum of PIZOF-2d4 loaded with TCNQ for 6 h remained unaltered (Fig. 4b). Increasing the impregnation time to 72 h or increasing the temperature to 60 °C resulted in similar line shapes. These results suggest that the guest may have adsorbed near the outer phenylene rings of the linker. To demonstrate this, PIZOF-2d8 loaded with TCNQ for 6 h (Fig. 4c) was studied by ²H NMR. Interestingly, the fitting of the ²H line shape indicated slightly faster rotational rates compared to pristine PIZOF-2d8, changing from k_rot = 2.1 MHz to k_rot = 3.3 MHz. Only rising the impregnation temperature to 60 °C for 24 h allowed faster adsorption equilibration, decreasing the rotational rate to k_rot = 1.2 MHz. This indicates that the diffusion of TCNQ is slow and may require longer equilibration times at higher temperature to reach an equilibrium. Furthermore, considering the changes in the chemical shift of the carboxylate peak observed by ¹³C NMR CP MAS upon the diffusion of the guest (Fig. 4a, pink mark), as well as the minor changes in the rotational dynamics of the aromatic rings, we postulate that the TCNQ is located closer to the metal cluster, which agrees well with previously observed guest-loaded Zr-based MOFs.^25,26Open in a separate windowFig. 4(a) ¹³C CPMAS of PIZOF-2d4 at different TCNQ loading times. (b) Experimental and simulated ²H NMR spectra of PIZOF-2d4 revealing that the signal from the central phenylene remains unaffected. (c) Experimental and simulated ²H NMR of PIZOF-2d8 under different TCNQ loading conditions.This work highlights that our approach can tackle one of the challenges in guest-loaded MOFs, which is the understanding of the interactions between the guest and the framework, a problem often exacerbated by the difficulty of acquiring high-quality single crystals. Furthermore, even after obtaining suitable crystals, X-ray diffraction studies provide only averaged space and time information. Conversely, solid-state NMR, as it is time-resolved, is ideal to analyze guest loaded MOFs in bulk samples, providing kinetic information such as transient π-interaction sites,²⁷ gas-absorption diffusional rates,²⁸ internal rotational dynamics,⁶ and other kinetic details.^29,30     

N-Directed fluorination of unactivated Csp3–H bonds

Site-selective fluorination of aliphatic C–H bonds remains synthetically challenging. While directed C–H fluorination represents the most promising approach, the limited work conducted to date has enabled just a few functional groups as the arbiters of direction. Leveraging insights gained from both computations and experimentation, we enabled the use of the ubiquitous amine functional group as a handle for the directed C–H fluorination of Csp³–H bonds. By converting primary amines to adamantoyl-based fluoroamides, site-selective C–H fluorination proceeds under the influence of a simple iron catalyst in 20 minutes. Computational studies revealed a unique reaction coordinate for the catalytic process and offer an explanation for the high site selectivity.

By converting primary amines to adamantoyl-based fluoroamides, site-selective C–H fluorination proceeds under the influence of a simple iron catalyst in 20 minutes.

Due to the pervasiveness of fluorine atoms in industrially relevant small molecules, all practicing organic chemists appreciate the importance of this element. As a result of its unusual size and electronegativity, fluorine imparts unique physicochemical properties to pendant organic molecules.¹ For example, the strong C–F bond can prevent biological oxidation pathways, thereby thwarting rapid clearance and potentially improving pharmacokinetics of molecules.² Moreover, the installation of fluorine or trifluoromethyl groups, with their strong inductive effects,² can have a profound effect on the pK_a of nearby hydrogen atoms.³ These attributes, among others, have solidified the importance of fluorinated molecules in the medicinal,^1–4 material,⁵ and agrochemical⁶ industries. Yet, the same unique properties that make fluorine atoms attractive chemical modifiers also make their installation difficult. Consequently, new methods for site-selective fluorine incorporation remain highly desirable.⁷Methods to construct Csp²–F bonds traditionally make use of the Balz–Schiemann fluorodediazonization⁸ and halogen exchange (“Halex” process).⁹ Advances in transition metal-mediated fluorination have broadened access to Csp²–F-containing molecules,¹⁰ but methods to access aliphatic fluorides remain limited. Conventional methods to make Csp³–F bonds—such as nucleophilic displacement of alkyl halides¹¹ and deoxyfluorination¹²—can have limited functional group compatibility and unwanted side reactions. A more efficient route to form aliphatic C–F bonds would target the direct fluorination of Csp³–H bonds (Scheme 1).¹³Open in a separate windowScheme 1(a) Previous work on functional-group directed Csp³–H fluorination; (b) our approach to N-directed fluorination.Recent efforts with palladium catalysis employ conventional C–H-metallation strategies to target Csp³–H bonds for fluorination.¹⁴ Alternatively, radical H-atom abstraction can remove the transition metal from the C–H-cleavage step, thereby offering a promising approach for Csp³–H-bond functionalization.¹⁵ With undirected C–H fluorination,¹⁶ however, selectivity remains a challenge in molecules without strength-differentiated Csp³–H bonds.¹⁷ To overcome this, our group pioneered the directed fluorination of benzylic Csp³–H bonds through an iron-catalyzed process that involves 1,5 hydrogen-atom transfer (HAT) to cleave the desired Csp³–H bond.¹⁸ Since this work, other groups have demonstrated directed Csp³–H fluorination based on radical propagation that proceeds through an interrupted Hofmann–Löffler–Freytag (HLF)¹⁹ reaction (Scheme 1a). These examples employ various radical precursors such as enones,²⁰ ketones,²¹ hydroperoxides,²² and carboxamides²³ to direct fluorination to specific Csp³–H bonds. Since amines are ubiquitous in natural products and drugs, we sought to use amines as the building block of our directing group to achieve fluorination of unactivated Csp³–H bonds (Scheme 1b). By using amines as the starting point, one could use the approach in straightforward synthetic planning for the late-stage functionalization of remote C–H bonds.In the design phase of the project, we needed to devise a synthetically tractable N–F system that would enable 1,5-HAT and allow for fluorine transfer (Scheme 1b). To begin, we decided to examine common amine activating groups that would support 1,5-HAT while avoiding undesired radical reactions. The chosen activating group would provide the ideal steric and electronic properties to enable both N–F synthesis and N–F scission for 1,5-HAT. We first examined common acyl groups (e.g., acetyl-, benzoyl, and tosyl-based amides), but these proved unsatisfactory. For example, fluoroamide synthesis was either not achieved or low yielding, and the desired fluorine transfer proceeded with significant side reactions or returned starting material. We then turned our attention to more sterically hindered amides—which allow for higher yielding fluoroamide synthesis. For fluorine transfer, we hypothesized that the increased steric bulk could slow intermolecular H-atom transfer, thereby leading more efficient intramolecular 1,5-HAT. To that end, we were delighted that pivaloyl-based fluoroamide 1a proceeded in 64% yield to form product 2a (Scheme 2a). Interestingly, 7% of 1a underwent fluorination at the tert-butyl group of the pivaloyl—presumably through a 1,4-HAT reaction (2aa, Scheme 2a).²⁴ The problem is further exacerbated when the pivaloyl group is homologated by one methylene—providing only 7% yield of desired 2b with 32% of the fluorination taking place on the iso-pentyl group (2bb, Scheme 2a). In an attempt to “tie back” the pivaloyl group and prevent the undesired fluorination, we employed a cyclopropylmethyl-based fluoroamide but observed no improvement.Open in a separate windowScheme 2(a) The targeted 1,5-fluorination of unactivated aliphatic C–H bonds results in partial fluorination of the amine activating group; (b) DFT studies (uM06/cc-pVTZ(-f)-LACV3P**//uM06/LACVP** level of theory) identified the competing pathways responsible for alternate fluorination; (c) DFT (uM06/cc-pVTZ(-f)-LACV3P**//uM06/LACVP** level of theory) evaluation of adamantoylamides revealed higher transition state energy for 1,4-HAT due to restricted vibrational scissoring (d) adamantoyl-activated octylamine shows no fluorination of the activating group. ^{a 1}H-NMR yield using 1,3,5-trimethoxybenzene as an internal standard. ^{b 19}F-NMR yield using 4-fluorotoluene as an internal standard.At this point, 1a proved most promising for efficient fluorine transfer, as well as being the most synthetically accessible fluoroamide. The increased steric hindrance minimizes N-sulfonylation during fluorination with NFSI, a problem that plagued the synthesis of our previously targeted fluoroamides.¹⁸ Therefore, to further investigate how to improve fluorine transfer from 1a, we decided to model H-abstraction computationally.We hypothesized that the fluorinated side product 2aa was formed after 1,4-HAT. Since 1,4-HAT is rare,²⁴ we employed DFT (see ESI^† for details) to calculate the 5-membered and 6-memebered transition-states for 1,4- and 1,5-HAT, respectively. Surprisingly, we found that the barrier for 1,4 C–H abstraction in 1a was 18.7 kcal mol⁻¹, which was only 2.6 kcal mol⁻¹ higher in energy than the barrier calculated for 1,5 C–H abstraction in the same system (Scheme 2b). This suggested that both processes were competing at room temperature. We attributed the comparable barriers to the flexibility of the tert-butyl group, which undergoes vibrational scissoring to accommodate the C–H abstraction. The transition state distortion is modest and allows the molecule to maintain bond angles close to the ideal 109.5° (Scheme 2b). Based on this insight, we sought to limit the scissoring of the tert-butyl group and prevent the 1,4-HAT that leads to the undesired side product. After investigating several possible candidates, the underutilized adamantoyl group appeared promising. To evaluate the rigidity of adamantane, we calculated the barriers for 1,4- and 1,5-HAT for the adamantoyl-capped octylamine 1c (Scheme 2c). As expected, the barriers for 1,4- and 1,5-HAT differed significantly—with 1,4 C–H abstraction proceeding with a barrier of 25.1 kcal mol⁻¹ and the 1,5-HAT barely changed at 16.4 kcal mol⁻¹—an 8.7 kcal mol⁻¹ difference. Consequently, we synthesized 1c and subjected it to the reaction conditions. Excitingly, the adamantoyl-capped system produced desired product 2c in 75% yield with no fluorination of the adamantyl group (Scheme 2d).Using the newly devised adamantoyl-based fluoroamides, the reaction conditions were optimized. While a range of metal salts, ligands, and radical initiators were evaluated, Fe(OTf)₂ proved unique in catalyzing fluorine transfer with fluoroamides.¹⁸ Catalyst loading of 10 mol% allowed convenient setup and minor deviations above or below this loading had little effect on yield (see ESI^†). Increasing the temperature to 40 °C produced a slight increase in yield (entry 2, Table 1). Likewise, raising the temperature to 80 °C resulted in full conversion of the starting material in 20 minutes with 81% yield of the desired product (entry 3, Table 1). It should be noted that fluorine transfer occurs efficiently at a variety of temperatures with adjustments in reaction time (see ESI^†). Increasing the reaction concentration or changing the solvent resulted in decreased yield (entries 4 and 5, Table 1). Furthermore, the absence of Fe(OTf)₂ leads to no reaction and quantitative recovery of starting material, attesting to the stability of fluoroamides and the effectiveness of Fe(OTf)₂ (entry 6, Table 1).Optimization of pertinent reaction parameters

Redox-active benzimidazolium sulfonamides as cationic thiolating reagents for reductive cross-coupling of organic halides

Redox-active benzimidazolium sulfonamides as thiolating reagents have been developed for reductive C–S bond coupling. The IMDN-SO₂R reagent provides a bench-stable cationic precursor to generate a portfolio of highly active N–S intermediates, which can be successfully applied in cross-electrophilic coupling with various organic halides. The employment of an electrophilic sulfur source solved the problem of catalyst deactivation and avoided odorous thiols, featuring practical conditions, broad substrate scope, and excellent tolerance.

Redox-active benzimidazolium sulfonamides as thiolating reagents have been developed for reductive C–S bond coupling.

The high frequency of sulfur-containing moieties in natural products,¹ bioactive molecules,² pharmaceuticals,³ organic materials,⁴ fragrances⁵ and asymmetric catalysis as chiral catalysts/ligands⁶ has triggered the best endeavours for the selective construction of C–S bonds. The conventional cross-coupling of thiols with aryl halides generally relies on the conversion of mercaptans to thiolates by means of transition-metal catalysis⁷ (such as Pd,⁸ Cu,⁹ and Ni¹⁰) and other metals,¹¹ although these efforts were plagued by several drawbacks. The strong coordination of thiolates to metals often leads to catalyst deactivation and displays low efficiencies. Therefore, high catalyst loading, specific ligands, excessive heating and strong bases are often required to facilitate this transformation (Scheme 1a, left). Recent development using photochemical¹² and electrochemical¹³ induced thiol radicals as a sulfur source could avoid the problem of catalyst poisoning, although restricted substrate scope was displayed (Scheme 1a, middle). Despite the progress made for C–S bond construction,¹⁴ the longstanding issues that exist in the above-mentioned strategies should not be overlooked.Open in a separate windowScheme 1Origin of the reaction design. (a) C–S formation from organic halides. (b) The preparation of the electrophilic thiolating reagent (R–S⁺). (c) This work: cationic active reagent for cross electrophilic coupling.Compared to classical cross-coupling processes, the nickel-catalyzed reductive cross-coupling of two electrophilic partners has emerged as a powerful tool for the replacement of air- and moisture-sensitive organometallic reagents.¹⁵ The cross electrophilic coupling for the construction of C–S bonds is more challenging due to the lack of sulfur sources and homo-coupling of organic halides (Scheme 1a, right). Several examples of reductive thiolation¹⁶ have been described using thiol derivatives as S⁺ sources (Scheme 1b). We speculated that readily accessible sulfonyl chloride as an electrophilic sulfur source could avoid the use of highly toxic thiols and significantly the substrate scope.¹⁷ However, the direct reduction of sulfonyl chloride inevitably resulted in dimerization to disulfide.^17b Putatively, activated by an electron-deficient heterocycle such as imidazole, sulfonyl chloride could be assembled into a bench-stable cationic reagent (Scheme 1b). Benzimidazolium sulfonamides would be better electron acceptors¹⁸ and easily reduced by PPh₃ to generate a highly reactive N–S⁺ species in situ. The positive charge of this intermediate is delocalized on both nitrogens of imidazole. Followed by the cleavage of the weak N–S bond (BDE ≈ 70 kcal mol⁻¹),¹⁹ the electrophilic sulfur species can be captured by metal catalysts for cross-coupling. Herein, we have described a redox-active benzimidazolium sulfonamide reagent (IMDN-SO₂R) for Ni-catalyzed reductive coupling of organic halides for a portfolio of C(sp)–S, C(sp²)–S and C(sp³)–S bond formations (Scheme 1c). This strategy avoids the formation of disulfide by-products and the use of organometallic reagents, which facilitates purification and enhances the functionality tolerance.To determine the suitable conditions for the reductive coupling of the cationic reagent with organic halides, we first studied the reductive thiolation of p-iodo-methoxybenzene (2a) and 1a (2 equiv.) with a survey of Ni catalysts in the presence of dtbbpy (20 mol%), PPh₃ (2.5 equiv.), Zn powder (3.0 equiv.) and MgCl₂ (2.0 equiv.) in DMA at 60 °C (Table 1). Ni(OTf)₂ as a catalyst was able to promote the reductive process to afford the desired aryl thioether product 3a in 92% isolated yield (entry 1). When using Ni(cod)₂, Ni(acac)₂, Ni(OAc)₂·4H₂O and Ni(PCy₃)₂Cl₂, lower yields were obtained (entries 2–5). Decreasing the 1a loading to 1.5 equiv., the yield of 3a reduced to 75% (entry 6). Switching 1a to a 2-phenyl substituted imidazolium sulfonamide reagent 1b, similar yields were achieved (entry 7). When decreasing both Ni(OTf)₂ and dtbbpy loading to 10 mol%, the yield reduced to 75%. In the absence of Ni(OTf)₂ or Zn powder, no desired product was observed (entries 9–10). Switching Zn powder to an organic reductant tetrakis-(dimethylamino)ethylene (TDAE), still a low conversion of the reaction was observed (entry 11). The results demonstrated that no organozinc reagents were generated. In the absence of the ligand, MgCl₂ or PPh₃, the reaction resulted in low yields, indicating that these ingredients were essential for this catalytic system (entries 12–14). Thus, the optimized conditions were selected for further investigation of the reaction scope.Optimization of the reaction conditions. Reaction condition: 2a (0.20 mmol), 1a (0.40 mmol, 2.0 equiv.), MgCl₂ (2.0 equiv.), PPh₃ (2.5 equiv.), Zn (3.0 equiv.), Ni(OTf)₂ (20 mol%) and dtbbpy (20 mol%) in DMA (2 mL) at 60 °C under Ar. ^aCrude yields determined by ¹H NMR spectroscopy using dibromomethane as an internal standard. ^bIsolated yield. dtbbpy = 4,4′-di-tert-butyl-2,2′-bipyridine. TDAE = tetrakis(dimethylamino)ethylene