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1.
The molecular structure of fluids composed of dendrimers of different generations is studied using nonequilibrium molecular dynamics (NEMD). NEMD results for dendrimer melts undergoing planar Couette flow are reported and analyzed with particular attention paid to the shear-induced changes in the internal structure of dendrimers. The radii of gyration, pair distribution functions and the fractal dimensionality of the dendrimers are determined at different strain rates. The location of the terminal groups is analyzed and found to be uniformly distributed throughout the space occupied by the molecules. The fractal dimension as a function of strain rate displays crossover behavior analogous to the Newtonian/non-Newtonian transition of shear viscosity.  相似文献   

2.
We present here the first comprehensive structural characterization of peptide dendrimers using molecular simulation methods. Multiple long molecular dynamics simulations are used to extensively sample the conformational preferences of five third-generation peptide dendrimers, including some known to bind aquacobalamine. We start by analyzing the compactness of the conformations thus sampled using their radius of gyration profiles. A more detailed analysis is then performed using dissimilarity measures, principal coordinate analysis, and free energy landscapes, with the aim of identifying groups of similar conformations. The results point to a high conformational flexibility of these molecules, with no clear "folded state", although two markedly distinct behaviors were found: one of the dendrimers displayed mostly compact conformations clustered into distinct basins (rough landscape), while the remaining dendrimers displayed mainly noncompact conformations with no significant clustering (downhill landscape). This study brings new insight into the conformational behavior of peptide dendrimers and may provide better routes for their functional design. In particular, we propose a yet unsynthesized peptide dendrimer that might exhibit enhanced ability to coordinate aquocobalamin.  相似文献   

3.
The SCLAIR® solution polymerization platform produces a wide variety of ethylene-α-olefin copolymers and polyethylene homopolymers. Commercial products exhibit density and melt index values ranging from about 0.920 to 0.962 g/cm3 and 0.3–75 g/10 min respectively. Polymer molecular weight distributions can be tailored to meet a broad selection of end-use requirements. In this study, we have used a chemometric analysis approach using The Unscrambler® software to demonstrate statistical correlations between rheological properties and fundamental structural parameters for thirty-three commercial SCLAIR polyethylenes. We demonstrate that molten rheological properties such as melt index, stress exponent, zero-shear viscosity, characteristic relaxation time, cross-over modulus and frequency show good non-linear correlations with molecular weight characteristics of SCLAIR products as determined by gel permeation chromatography (GPC). We also show that, with the use of Partial Least Squares (PLS) regression techniques, most melt rheological properties can be accurately predicted on the basis of GPC data.  相似文献   

4.
On axial extension of polymer melts at constant deformation rates, the development of high-elastic deformation is of predominant importance during the initial period. High-elastic deformation is accompanied by a rise in viscosity and in the modulus of high-elasticity and by retardation of the relaxation processes in the region of large relaxation times. At relatively low deformation rates, the rise in viscosity and high-elasticity modulus and the retardation of relaxation processes may give way to a decrease in viscosity and high-elasticity modulus and acceleration of relaxation processes, so that stationary flow regimes are attained. The transition from strain regimes with increasing viscosity and modulus of high elasticity to those with a decrease of these quantities corresponds to an increase in the rate of accumulation of irreversible deformation. Accordingly, a competing influence due to the orientation effect and to destruction of the network of intermolecular bonds becomes evident while stationary flow is being attained. The orientation effect must be responsible for the retardation of the relaxation processes, whereas rupture of the intermolecular network bonds results in structural relaxation accelerating relaxation processes. In contrast to shearing, during extension the orientation effect is of predominant importance. Hence in stationary flow regimes the viscosity may not only remain independent of the rate of strain, but even increase with it. In this case the contribution of the large relaxation times to the relaxation spectrum increases with increasing stress in stationary flow regimes. The fact that the longitudinal viscosity and the modulus of high elasticity are independent of the stress in stationary flow regimes does not guarantee linearity of the mechanical properties of the polymer in the prestationary stage of deformation when complex changes occur in its relaxation characteristics. At high deformation rates the viscosity and the modulus of high elasticity keep rising with increasing deformation until rupture occurs. Determination of the strength of polystyrene samples vitrified after extension showed that it is due not to the entire degree of extension, but only to the value of accumulated high-elastic deformation. The strength of the vitrified samples is to a first approximation independent of the rate at which the melt was extended.  相似文献   

5.
Molecular dynamics is used to characterize the process of crystallization for a united atom model of polyethylene. An oriented melt is produced by uniaxial deformation under constant load, followed by quenching below the melting temperature at zero load. The development of crystallinity is monitored simultaneously using molecular-based order parameters for density, energy, and orientation. For crystallization temperatures ranging from 325 to 375 K, these simulations clearly show the hallmarks of crystal nucleation and growth. We can identify multiple nucleation events, lamellar growth up to the limit imposed by periodic boundaries of the simulation cell, and lamellar thickening. We observe a competition between the rate of nucleation, which results in multiple crystallites, the rate of chain extension, which results in thicker lamellae, and the rate of chain conformational relaxation, which is manifested in lower degrees of residual order in the noncrystalline portion of the simulation. The temperature dependence of lamellar thickness is in accord with experimental data. At the higher temperatures, tilted chain lamellae are observed to form with lamellar interfaces corresponding approximately to the [201] facet, indicative of the influence of interfacial energy.  相似文献   

6.
We measured the shape and the internal dynamics of starlike dendrimers under good solvent conditions with small-angle neutron scattering and neutron spin-echo (NSE) spectroscopy, respectively. Architectural parameters such as the spacer length and generation were varied in a systematic manner. Structural changes occurring in the dendrimers as a function of these parameters are discussed, i.e., in terms of the fractal dimension and deviations of the radius of gyration from the Gaussian value. A first cumulant evaluation of the NSE spectra for each scattering vector q separately yields the length scale dependent relaxation rates. We observe a local minimum in the normalized relaxation rates Omega(q)q(3) on length scales corresponding to the overall dendrimer dimension. The dynamics is discussed within a Rouse-Zimm approach generalized to the case of starlike dendrimers of arbitrary geometry. The model allows an identification of the modes contributing to the relaxation of the dendrimer in the q and time range of the NSE experiment. The local minimum is due to collective breathing motions of (parts of) the dendrons relative to each other. Shape fluctuations are not observed.  相似文献   

7.
A method of calculating the bite (P-M-P) angle for dendritic ligands is reported. Diphenylphosphine terminated dendritic ligands were modified with either a single rhodium or a rhodium complex [HRh(CO)(2)] and molecular dynamics techniques used to run simulations to determine the dynamic bite angle (beta(d)) as a time averaged property. The effects of changing the composition of the dendritic branches is investigated and comparison with experimental hydroformylation data reveals that the dendrimer with the highest linear: branched ratio also has a dynamic bite angle closest to the theoretical ideal value of 120 degrees .  相似文献   

8.
9.

Molecular dynamics simulation was applied to investigating the evolvement rule of cobalt melt microstructure during solidification at different cooling rates. The cooling rate for the formation of amorphous phase is determined by analyzing the radial distribution function, the H–A bond-type index and the mean square displacement. The simulation results showed that the nucleation undercooling increases with the initial temperature, and in the undercooling versus temperature curve, there are two inflection points. Besides, when the initial temperature reaches 2450 K, the undercooling will be stabilized at 1061 K. As the cooling rate is less than 1.0?×?1011.0 K s?1, the FCC and HCP crystal structures will be obtained. Amorphous structure will be obtained if the cooling rate is more than 1.0?×?1013.0 K s?1. If the cooling rate of the Co melt is between 1.0?×?1011.0 and 1.0?×?1013.0 K s?1, the crystal and amorphous structures will be coexistent, which indicates that the critical cooling rate of crystal–amorphous transition is 1.0?×?1011.0 K s?1.

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10.
11.
Molecular dynamics modelling has been used to simulate the structures of phopshine-functionalised, silsesquioxane-based dendrimers whose excellent catalytic properties have been previously demonstrated. The effect of changing the chemical composition of the dendrimer branches is simulated. The results indicate that adding a methylene unit to a branch increases the overall size of the dendrimer but replacing a methylene unit with an oxygen atom decreases the size of the dendrimer. The size and shape of the dendrimers have also been simulated on changing the temperature and polarity of the solvent. The distribution of phosphine groups on the exterior has also been modelled and this suggests that all are available for bonding to catalytic metals in all the compounds.  相似文献   

12.
Structure and transport properties of dendrimers in dilute solution are studied with the aid of Brownian dynamics simulations. To investigate the effect of molecular topology on the properties, linear chain, star, and dendrimer molecules of comparable molecular weights are studied. A bead-spring chain model with finitely extensible springs and fluctuating hydrodynamic interactions is used to represent polymer molecules under Theta conditions. Structural properties as well as the diffusivity and zero-shear-rate intrinsic viscosity of polymers with varied degrees of branching are analyzed. Results for the free-draining case are compared to and found in very good agreement with the Rouse model predictions. Translational diffusivity is evaluated and the difference between the short-time and long-time behavior due to dynamic correlations is observed. Incorporation of hydrodynamic interactions is found to be sufficient to reproduce the maximum in the intrinsic viscosity versus molecular weight observed experimentally for dendrimers. Results of the nonequilibrium Brownian dynamics simulations of dendrimers and linear chain polymers subjected to a planar shear flow in a wide range of strain rates are also reported. The flow-induced molecular deformation of molecules is found to decrease hydrodynamic interactions and lead to the appearance of shear thickening. Further, branching is found to suppress flow-induced molecular alignment and deformation.  相似文献   

13.
The molecular structure of poly(amido amine) dendrimers is investigated with molecular dynamics simulations using the Amber 7 modeling package. A method for defining residues for complex molecules is developed, and it enables the study of the effects of protonation of the primary and tertiary amines. The effects of implicit solvents versus explicit solvents as well as the pH of the solution on the molecular structure are calculated. Good agreement with experimental results for the radius of gyration measured in methanol by X‐ray scattering is observed for simulations with an explicit solvent and protonation of the primary amines. Calculations of the intramolecular atomistic pair correlation function show a dense core, as well as the presence of voids filled with the solvent inside the molecule. The primary amines (end groups) are shown to access the molecular interior by backfolding. Comparisons with experiments and other reported simulation results highlight the advantages of the approach developed here. © 2006 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 44: 3062–3077, 2006  相似文献   

14.
Room-temperature ionic liquids (RTILs) have attracted much attention in the scientific community in the past decade due their novel and highly customizable properties. Nonetheless, their high viscosities pose serious limitations to the use of RTILs in practical applications. To elucidate some of the physical aspects behind transport properties of RTILs, extensive classical molecular dynamics calculations are reported. Here, in particular, bulk viscosities and ionic conductivities of butyl-methyl-imidazole based RTILs are presented over a wide range of temperatures. The dependence of the properties of the liquids on simulation parameters, e.g., system-size effects or the choice of the interaction potential, is analyzed in detail.  相似文献   

15.
16.
The intramolecular relaxation dynamics of semiflexible dendrimers in dilute solutions are theoretically investigated in the framework of optimized Rouse-Zimm formalism. Semiflexibility is implemented by modeling topological restrictions on the bond directions and orientations of the respective bond-vectors. Based on our recently developed approach for semiflexible dendrimers [A. Kumar and P. Biswas, Macromolecules 43, 7378 (2010)], the mechanical and dielectric relaxation moduli are studied as functions of local flexibility parameters and branching topology. It is rather interesting to observe that semiflexibility affects the local modes of G'(ω) and Δε'(ω), which have lower relaxation rate with increasing bond restrictions, while the collective modes with small relaxation rate remain almost constant. The relaxation dynamics of the flexible dendrimer is similar to that of the semiflexible dendrimer with unrestricted bond orientations (Φ = 0) and is flanked by the compressed (Φ = 30°) and expanded (Φ = 150°) conformations, respectively. The effect of semiflexibility is typically reflected in the intermediate frequency regime. The expanded conformations of semiflexible dendrimers display a power-law behavior in the intermediate frequency regime for both loss and storage modulus resembling fractal structures, while the compressed and unrestricted bond orientation conformations exhibit an approximately logarithmic dependence. The power-law exponent is found to be similar to the flexible dendrimers with excluded volume interactions. Thus, by tuning Φ, a spectrum of dynamic relaxation pattern is obtained spanning a broad range of conformations from a power-law fractal network to a non-fractal one. In certain limits, this highly generalized model captures the characteristics of flexible dendrimers and also resembles La Ferla's model semiflexible dendrimers. The influence of hydrodynamic interactions reduces the dynamical range and the width of the intermediate domain by decreasing the smaller relaxation rates and increasing the higher relaxation rates correspondingly.  相似文献   

17.
The design, synthesis, properties and molecular modeling of fully conjugated dendritic molecules and conjugated hyperbranched polymers are described. It has been shown that conjugated hyperbranched molecules are much more soluble than their linear analogues while maintaining all the properties characteristic of conjugated polymers. It was found that the use of polymeric solid support in hyperbranched polymerization allows to control molecular weight and degree of branching (DB). The molecular modeling of hyperbranched conjugated molecules reveals that hyperbranched structure of conjugated molecules affects significantly neither their stability nor the conjugation. On the other hand the terminal groups affect appreciably the electronic structure of conjugated hyperbranched molecules.  相似文献   

18.
The molecular models of polymer physics (reptation, tube renewal) give a reasonable picture of the diffusion and relaxation of long and flexible chains: the concept of “tube renewal” (constraint release) added to the reptation idea explains the polydispersity effects for multimodal blends as well as for commercial linear polymers. The real issue now is to introduce these concepts in the formalism of non-linear viscoelasticity in order to explain the experimental data, as a first step in the range of moderate rates of deformation, then at very high strains.  相似文献   

19.
Carbon-dioxide-expanded liquids, which are mixtures of organic liquids and compressed CO2, are novel media used in chemical processing. The authors present a molecular simulation study of the transport properties of liquid mixtures formed by acetonitrile and carbon dioxide, in which the CO2 mole fraction is adjusted by changing the pressure, at a constant temperature of 298 K. They report values of translational diffusion coefficients, rotational correlation times, and shear viscosities of the liquids as function of CO2 mole fraction. The simulation results are in good agreement with the available experimental data for the pure components and provide interesting insights into the largely unknown properties of the mixtures, which are being recognized as important novel materials in chemical operations. We find that the calculated quantities exhibit smooth variation with composition that may be represented by simple model equations. The translational and rotational diffusion rates increase with CO2 mole fraction for both the acetonitrile and carbon dioxide components. The shear viscosity decreases with increasing amount of CO2, varying smoothly between the values of pure acetonitrile and pure carbon dioxide. Our results show that adjusting the amount of CO2 in the mixture allows the variation of transport rates by a factor of 3-4 and liquid viscosity by a factor of 8. Thus, the physical properties of the mixture may be tailored to the desired range by changes in the operating conditions of temperature and pressure.  相似文献   

20.
The crystallization of nitromethane, CH(3)NO(2), from the melt on the (100), (010), (001), and (110) crystal surfaces at 170, 180, 190, 200, 210, and 220 K has been investigated using constant-volume and -temperature (NVT) molecular dynamics simulations with a realistic, fully flexible force field [D. C. Sorescu, B. M. Rice, and D. L. Thompson, J. Phys. Chem. B 104, 8406 (2000)]. The crystallization process and the nature of the solid-liquid interface have been investigated by computing the molecular orientations, density, and radial distribution functions as functions of time and location in the simulation cell. During crystallization the translational motion of the molecules ceases first, after which molecular rotation ceases as the molecules assume proper orientations in the crystal lattice. The methyl groups are hindered rotors in the liquid; hindrance to rotation is reduced upon crystallization. The width of the solid-liquid interface varies between 6 and 13 ? (about two to five molecular layers) depending on which crystal surface is exposed to the melt and which order parameter is used to define the interface. The maximum rate of crystallization varies from 0.08 molecules ns(-1) ?(-2) for the (010) surface at 190 K to 0.41 molecules ns(-1) ?(-2) for the (001) surface at 220 K.  相似文献   

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