Refolding foldamers: triazene-arylene oligomers that change shape with chemical stimuli

We describe the preparation of five triazene-arylene oligomers (3, 4, 7, 8, and 11) and investigations of their folding properties in aqueous solution. These oligomers contain four 2-fold rotors and populate a conformational ensemble comprising at least 10 states. Extensive 1D and 2D NMR studies as well as X-ray crystallography establish that the presence of three members of the cucurbit[n]uril family (CB[n]), CB[10], CB[7], and CB[8], results in the selective population of the (a,a,a,a)-, (a,s,s,a)-, and (a,a,a,s)-conformers. As a result of the high affinity and highly selective binding properties of the CB[n] family, it is possible to fold a single foldamer strand (3) into the CB[8].(a,a,a,s)-3 conformer by the addition of CB[8], then unfold and refold it into the CB[7].(a,s,s,a)-3.CB[7] conformer by addition of CB[7] and 3,5-dimethylaminoadamantane (17), then unfold and refold it again into the CB[10].(a,a,a,a)-3 conformer by addition of CB[10].CB[5] and aminoadamantane (18). The transformation of CB[8].(a,a,a,s)-3 into CB[7].(a,s,s,a)-3.CB[7] proceeds through the intermediacy of CB [8].(a,a,s,a)-3.CB[7], which enhances the rate of dissociation of strand 3 from CB[8].     

四氟乙烯齐聚体的反应 四氟乙烯四、五聚体和芳香胺的反应

前已报道四氟乙烯四聚体(全氟-3,4-甲基己烯-3)(1)、五聚体(全氟-3,4-二甲基-4-乙基己烯-2)(2)和脂肪烷氧以及脂肪胺的亲核反应.本文报道化合物1,2和芳香胺如苯胺、β-萘胺的反应.由于烯烃1、2双键处于分子中间,因而当亲核试剂进攻时,双键容易发生重排,生成的末端基烯烃更具反应性,故导致一取代、二取代、三取代以及环化降解等复杂产物.     

Electrophoresis of a sphere at an arbitrary position in a spherical cavity filled with Carreau fluid

Boundary effects on the electrophoretic behavior of a charged entity are of both fundamental and practical significance. Here, they are examined by considering the case where a sphere is at an arbitrary position in a spherical cavity under conditions of low surface potential and weak applied electrical field. Previous analyses are extended to the case of a non-Newtonian fluid, and a Carreau model is adopted for this purpose. The effects of key parameters such as the thickness of a double layer, the relative sizes of particle and cavity, the position of a particle, and the nature of a fluid on the electrophoretic mobility of a particle are discussed. Several interesting phenomena are observed. For example, if the applied electric field points toward north, the mobility of a particle has a local maximum when it is at the center of a cavity. However, if a particle is sufficiently close to the north pole of a cavity, its mobility exhibits a local minimum as its position varies. This does not occur when the particle is close to the south pole of the cavity; instead, it may move in the direction opposite to that of the applied electric field. For a Newtonian fluid, if a particle is close to the north pole of a cavity, its upward movement yields a clockwise (counterclockwise) vortex near the north pole of the cavity and a counterclockwise (clockwise) vortex near the south pole of the cavity on its right (left)-hand side. The latter is not observed for a Carreau fluid.     

Highly Stereoselective Cationic Cyclization Assisted by a Sulfenyl Group. Scope, Limitation, and Mechanism

When 8-acetoxy-2-methyl-9-(phenylthio)-2-nonene (1a) was treated with an acid, followed by a base, alkylative cyclization proceeded to give a mixture of 1,2-disubstituted cyclohexanes: 2a, 3a, and 4a. The stereochemistry of the reaction was only slightly affected by the leaving group and the reaction conditions, such as the temperature, solvent, and acid. However, the bulkiness of the sulfenyl group had a great effect on the stereochemical course of the reaction. High trans selectivity was attained when 1c (a derivative of 1a with a bulkier sulfenyl group) was used as a substrate. On the other hand, the length and rigidity of the carbon chain of the substrate also had a major effect on the stereochemistry of the reaction; a high cis selectivity was observed when 10a (a one-carbon-fewer analog of 1a) or 15a (a derivative with one more double bond in the carbon chain than in 1a) was used as the substrate. The reaction proceeded via a 6,5- or 5,5-fused-ring intermediate. The sulfenyl-group-assisted reaction could be a useful method for the stereoselective cyclization of acetates of alpha-sulfenylated secondary alcohols.     

Photochromism of mixed crystals containing bisthienyl-, bisthiazolyl-, and bisoxazolylethene derivatives

Single crystals composed of two or three different kinds of diarylethenes, having similar geometrical structures but different colors in the closed-ring isomers, 1,2-bis(2-methyl-5-phenyl-3-thienyl)perfluorocyclopentene (1a), 1,2-bis(5-methyl-2-phenyl- 4-thiazolyl)perfluorocyclopentene (2a), and 1,2-bis(5-methyl-2-phenyl-4-oxazolyl)perfluorocyclopentene (3a) have been prepared in an attempt to form single crystals which exhibit different colors, depending on illumination wavelengths. When 1a and 2a are mixed in ethanol and the content of 2a in the feed is higher than that of 1a, only a needle-shaped crystal is obtained. The crystal shape is similar to that of 2a. On the other hand, high content of 1a in the feed leads to formation of a block-shaped crystal, of which the shape is similar to that of 1a. At a feed ratio of 1:1 for 1a and 2a, two types of crystals such as needle- and block-shapes are obtained from the same batch. Mixed crystals composed of three kinds of derivatives 1a/2a/3a have also been prepared. A crystal composed of the three derivatives in the molar ratio of 32 (1a):53 (2a):15 (3a) was obtained. X-ray analysis proved that 1a and 3a are packed in the crystal lattice of 2a. The mixed crystal 1a/2a/3a changed color from colorless to yellow, red, and blue upon irradiation with light of appropriate wavelengths.     

Electrophoresis of a rigid sphere in a Carreau fluid normal to a large charged disk

The electrophoresis of a rigid sphere in a Carreau fluid normal to a large disk is analyzed theoretically under the conditions of low surface potential and weak applied electric field. Previous analyses are extended to the case where a disk can be charged, and a more realistic electrostatic force formula is applied. We show that the qualitative behavior of a sphere depends largely on its distance from a disk, the thickness of double layer, and the nature of a fluid. In general, the presence of a disk has the effect of increasing the conventional hydrodynamic drag on a sphere, and a decrease in the thickness of the double layer surrounding a sphere has the effect of enhancing the shear-thinning effect. However, this might not be the case if a sphere is uncharged and a disk is charged, where the osmotic pressure field and the induced charge on the sphere surface can be significant. The shear-thinning effect is important only if the thickness of double layer is sufficiently thick. This result can play a significant role in practice such as in electrophoretic deposition, where the deposition electrode is charged and the fluid medium is usually of shearing-thinning nature.     

Surface integration approach: a new technique for evaluating geometry dependent forces between objects of various geometry and a plate

We present a new approach, which can be considered as a generalization of the Derjaguin approximation, that provides exact means to determine the force acting between a three-dimensional body of any shape and a half-space mutually interacting via pairwise potentials. Using it, in the cases of the Lennard-Jones, standard and the retarded (Casimir) van der Waals interactions we derive exact expressions for the forces between a half-space or a slab of finite thickness and an ellipsoid in a general orientation, which in the simplest case reduces to a sphere, a tilted fully elliptic torus, and a body obtained via rotation of a single loop generalized Cassini oval, a particular example of which mimics the shape of a red blood cell. The results are obtained for the case when the object is separated from the plane via a non-polar continuous medium that can be gas, liquid or vacuum. Specific examples of biological objects of various shapes interacting with a plate like substrates are also considered.     

Photolysis of organopolysilanes. The reaction of photochemically generated methylphenylsilylene with conjugated dienes

Photolysis of 2-phenylheptamethyltrisilane (I) in the presence of acyclic and cyclic conjugated dienes has been investigated using both a high-pressure mercury lamp with a quartz filter and a low-pressure mercury lamp with a Vycor filter. Irradiation of I in the presence of 1,3-butadiene, isoprene or 2,3-dimethylbutadiene with a high-pressure mercury lamp gave a product arising from photochemical isomerization of a silacyclopropane derivative and a compound apparently formed by 1,4-silylene addition, along with a 1/1 “ene” adduct of the diene to a photo-rearranged intermediate containing the silicon—carbon double bond. Irradiation of I in the presence of the conjugated diene with a low-pressure mercury lamp, followed by treatment of the product with methanol, afforded a methoxysilane arising from methanolysis of the corresponding silacyclopropane, together with the isomerization product, silacyclopentene and rearranged addition product. Irradiation of I in the presence of cyclopentadiene with a high-pressure mercury lamp produced methylphenylsilylcyclopentadiene, while irradiation of a similar mixture with a low-pressure mercury lamp followed by treatment with methanol gave 4-(methoxymethylphenylsilyl)-1-cyclopentene. With 1,3-cyclooctadiene, the photochemically generated methylphenylsilylene afforded many types of addition product. Photolysis of I in the presence of 1,3-cyclohexadiene, however, afforded none of the silylene addition products.     

Synthesis, properties, and redox behavior of di(1-azulenyl)(2- and 3-thienyl)methyl cations and dications composed of two di(1-azulenyl)methylium units connected with 2,5-thiophenediyl and 2,5-thienothiophenediyl spacers

The titled stable monocations, di(1-azulenyl)(2- and 3-thienyl)methyl cations 7a,b and 8a,b and dications composed of two di(1-azulenyl)methylium units connected with 2,5-thiophenediyl and 2,5-thieno[3,2-b]thiophenediyl spacers 9a,b and 10a,b were prepared by hydride abstraction of the corresponding methane derivatives. These mono- and dications 7a,b, 8a,b, 9a,b, and 10a,b showed high stability with large pK(R)+ values. The values of monocations 7a,b and 8a,b were 11.2-11.8 +/- 0.1 and 11.4-12.4 +/- 0.1, respectively. Two cation units in dications 9a,b and 10a,b were neutralized via one step at the pH of 11.1-11.7 +/- 0.1, which corresponds to the average of the pK(R)+ values of the dications and half-neutralized monocations. Electrochemical behavior of 7a,b, 8a,b, 9a,b, and 10a,b was examined by cyclic voltammetry (CV). Formation of the thienoquinoid products 18a,b and 19a,b from 9a,b and 10a,b was characterized by UV-vis spectroscopy under electrochemical reduction conditions. Chemical reduction of 9a,b and 10a,b with Zn powder in acetonitrile afforded 18a,b and 19a,b as deep-colored crystals, which exhibited rather high electron-donating ability.     

Association-dissociation equilibrium of loop structures in single-chain folding into a toroidal condensate

Recently, it has been revealed that a semiflexible polyelectrolyte chain can form a partially folded conformation stably as a result of an electrostatic interaction. Interestingly, there are cases where the appearance of this structure requires a high-salt condition of a solution. In order to solve this problem, we consider the double equilibrium of the formation of loops and their aggregation on a single-chain polymer. First, an aggregate with a typical surface energy is examined as a test case. The basic nature of the folding transition is discussed with regard to the chemical potential of loop structures. Next, we consider a charged aggregate for which the interior is completely neutralized by counter ions. In this model, a partially folded chain appears with a high-salt condition. Based on this model, screened interactions between surface charges and a toroidal shape of a folded structure are considered essential factors bihind this phenomenon.     

Gibbs free energy of liquid drops on conical fibers

Small drops can move spontaneously on conical fibers. As a drop moves along the cone, it must change shape to maintain a constant volume, and thus, it must change its surface energy. Simultaneously, the exposed surface area of the underlying cone must also change. The associated surface energies should balance each other, and the drop should stop moving when it reaches a location where the free energy is a minimum. In this paper, a minimum Gibbs free energy analysis has been performed to predict where a drop will stop on a conical fiber. To obtain the Gibbs free energies of a drop at different locations of a conical fiber, the theoretical expressions for the shape of a droplet on a conical fiber are derived by extending Carroll's equations for a drop on a cylindrical fiber. The predicted Gibbs free energy exhibits a minimum along the length of the cone. For a constant cone angle, as the contact angle between the liquid and the cone increases, the drop will move toward the apex of the cone. Likewise, for a constant contact angle, as the cone angle increases, the drop moves toward the apex. Experiments in which water and dodecane were placed on glass cones verify these dependencies. Thus, the final location of a drop on a conical fiber can be predicted on the basis of the geometry and surface energy of the cone, the surface tension and volume of the liquid, and the original location where the drop was deposited.     

Relative pKa values from first-principles molecular dynamics: the case of histidine deprotonation

Accurate calculation of pK(a) values and free energies for acid/base reactions in the condensed phase has been a long-standing goal of theoretical chemistry. We present a novel application of the Car-Parrinello molecular dynamics method to the problem of relative pK(a) determination. As a particular example, we focus on the second stage in the dissociation of histidine, a process that holds special importance for biology. Using constrained molecular dynamics, we have analyzed the structural, electronic, and dynamical transformations taking place along a preselected, intuitive reaction coordinate. By integrating the potentials of mean force for the deprotonation of histidine and for a reference reaction, autodissociation of water, we obtain a pK(a) value of 6.8, which appears to be in good agreement with the experimental estimate of 6.1. Detailed analysis was undertaken to determine the value of the constraint, which transformed the N*-H* from a covalent to a hydrogen bond. This helped to identify a number of properties that could be successfully used in monitoring the dissociation process. Additional analysis in terms of electron localization functions provided valuable insight into the nature of the deprotonation reaction.     

Functionalized chloroenamines in aminocyclopropane synthesis - VI. Chlorotetrahydropyridines as a basis for the synthesis of 3-azabicyclo[3.1.0.]hexane derivatives

Enamines 8a-e could be chlorinated by equimolar amounts of N-chlorosuccinimide (9) generating monochloroenamines 10a-e; 10a and 10d were isolated as pure substances. Two equivalents of 9 afforded the dichloroenamines 12a,c from 8a,c. Interaction of the chlorinated enamines 10a-e and 12a,c with cyanide gave morpholino-azabicyclohexane derivatives. 10a-d, thereby, led to exo-cyano-isomers lla-c; 12a,c generated endo-cyano compounds 13a,c. In the case of the ethoxycarbonylated chloroenamine 10e a mixture of diastereomeric products 11e and 14e resulted from the analogous reaction. Reduction of 11a and 14e with lithium aluminum hydride produced a pair of diastereomeric triamines 15 and 16. A tricyclic diazasystem 19 was formed from the reaction of cyanide with the carbamoylated chloroenamine 18. Monochloroenamine 10a and dichloroenamine 12a showed a significant mutagenic behaviour in the Ames test.     

Tautomeric equilibrium between penta- and hexacoordinate silicon chelates. A chloride bridge between two pentacoordinate silicons.

The reaction of O-trimethylsilyl-1,1-dimethyl-2-trifluoroacetylhydrazine (1a) with chloromethyl(methyl)dichlorosilane affords an unexpected equilibrium mixture, 10a right arrow over left arrow 11a, between a neutral hexacoordinate silicon chelate with a covalent chloro ligand (10a) and an ionic pentacoordinate silicon complex (11a). The equilibrium reaction consists formally of a migration of the covalent chloro ligand from silicon to an adjacent ammonium nitrogen, as a chloride anion, and thus constitutes a novel type of tautomeric reaction. Crystallographic and NMR data provide evidence for the reaction. Temperature, solvent, substituent, and counterion effects on the tautomeric equilibrium are discussed: when the temperature of the mixture is raised, the equilibrium ratio 10a/11a increases. Formation of the mixture in toluene, a nonionizing solvent, shifts the equilibrium completely toward the neutral 10a. When the initial hydrazide has a phenyl (11c) or a hydrogen (11b) group as substituent, rather than CF3, the equilibrium is shifted to the ionic side. Replacement of the chloride counterion by triflate, using trimethylsilyl triflate, shifts the 10a/11a mixture to the ionic side. Low-temperature NMR monitoring of the stepwise formation of 10/11 was carried out and provided insight into the reaction mechanism. In an attempt to grow crystals of 11c, the pentacoordinate tautomer analogue, an unprecedented chloride-bridged disiloxane complex, with two pentacoordinate silicons sharing a common axial chloro ligand, crystallized and was characterized and described.     

Photochromic reactions of diarylethenes in single crystals with intermolecular O--H...N hydrogen-bonding networks

The crystal structures and photochromic performance of a single crystal of a diarylethene derivative possessing carboxyl groups, 1,2-bis(5-carboxyl-2-methyl-3-thienyl)perfluorocyclopentene (1 a), and cocrystals of 1 a with 4,4'-, 2,4'-, and 2,2'-bipyridines were examined. In crystal 1 a, a discrete cyclic structure was observed, in which four 1 a molecules are linked through hydrogen bonds between the carboxyl groups. In the homocrystal, photoreactive and photoinactive conformers of 1 a exist in the ratio of 1:1. In the cocrystals of 1 a with bipyridines, O--HN-type hydrogen bonds between 1 a and pyridyl groups were formed, and all 1 a molecules are fixed in a photoreactive conformation. Both the homocrystal 1 a and the cocrystals showed photochromic performances, and color variation from bluish-violet to cyan was observed, depending on the conformation of the packed diarylethene molecules.     

Density functional theoretical study on enantiomerization of 2,2'-biphenol

The S-R enantiomerization processes of 2,2'-biphenol (biphenol) have been investigated using density functional theory (DFT). Five isomers for biphenol were identified: I0, which is the most stable isomer; I1a and I1b, which are formed by a restricted rotation of one OH group; and I2a and I2b, which are formed by a restricted rotation of the two OH groups where a and b denote cis and trans configurations, respectively. Each isomer has R- and S-enantiomers. The energies relative to the most stable isomer I0 are 1.6, 3.3, 5.3, and 5.5 kcal mol(-1) for I1a, I1b, I2a, and I2b, respectively. The direct enantiomerization of I0, in which the phenol-ring rotation is considered to be the reaction coordinate while the OH rotations are frozen, is forbidden because of the repulsion between the two OH groups. The transition states for isomerizations of I0 to other isomers (I1a, I1b, I2a, or I2b) were calculated as well as those for the other direct enantiomerizations except for that of I0. From the viewpoint of the least number of the transition states and their low energy levels, the probable S-R enantiomerization of I0 is expressed as a sequential process of isomerization: I0,S --> I1a,S, a direct enantiomerization induced by one of the two OH rotations, I1a,S --> I1a,R, and another isomerization, I1a,R --> I0,R, that is, I0,S --> I1a,S --> I1a,R --> I0,R as the whole process. This process is effective in quantum control of the enantiomerization of biphenol and can be carried out by a sequence of a pump-dump IR laser-pulse scheme.     

Effect of charged boundary on electrophoresis: Sphere in spherical cavity at arbitrary potential and double-layer thickness

The boundary effect on electrophoresis is investigated by considering a spherical particle at an arbitrary position in a spherical cavity. Our previous analysis is extended to the case where the effect of double-layer polarization can be significant. Also, the effect of a charged boundary, which yields an electroosmotic flow and a pressure gradient, thereby making the problem under consideration more complicated, is investigated. The influences of the level of the surface potential, the thickness of double layer, the relative size of a sphere, and its position in a cavity on the electrophoretic behavior of the sphere are discussed. Some results that are of practical significance are observed. For example, if a positively charged sphere is placed in an uncharged cavity, its mobility may have a local minimum as the thickness of the double layer varies. If an uncharged sphere is placed in a positively charged cavity, the mobility may have a local minimum as the position of the sphere varies. Also, if the size of a sphere is fixed, its mobility may have a local minimum as the size of a cavity varies. These provide useful information for the design of an electrophoresis apparatus.     

Electrokinetic flow in an elliptic microchannel covered by ion-penetrable membrane

The electrokinetic flow of an electrolyte solution in an elliptical microchannel covered by an ion-penetrable, charged membrane layer is examined theoretically. The present analysis extends previous results in that a two-dimensional problem is considered, and the system under consideration simulates the flow of a fluid, for example, in a microchannel of biological nature such as vein. The electroosmostic volumetric flow rate, the total electric current, the streaming potential, and the electroviscous effect of the system under consideration are evaluated. We show that, for a constant hydraulic diameter, the variations of these quantities as a function of the aspect ratio of a microchannel may have a local minimum or a local maximum at a medium level of ionic strength, which depends on the thickness of the membrane layer. For a constant cross-sectional area, the electroosmostic volumetric flow rate, the total electric current, and the streaming potential increase monotonically with the increase in the aspect ratio, but the reverse is true for the electroviscous effect.     

Effect of a charged boundary on electrophoresis: a sphere at an arbitrary position in a spherical cavity

The effect of the presence of a charged boundary on the electrophoretic behavior of a particle is investigated by considering a sphere at an arbitrary position in a spherical cavity under conditions of low surface potential and weak applied electric field. Previous analyses are modified by using a more realistic electrostatic force formula and several interesting results, which are not reported in the literature, are observed. We show that the qualitative behavior of a particle depends largely on its position, its size relative to that of a cavity, and the thickness of the electric double layer. In general, the presence of a cavity has the effect of increasing the conventional hydrodynamic drag on a particle through a nonslip condition on the former. Also, a decrease in the thickness of the double layer surrounding a sphere has the effect of increasing the electrostatic force acting on its surface so that its mobility increases. However, this may not be the case when an uncharged particle in placed in a positively charged cavity, where the electroosmotic flow plays a role; for example, the mobility can exhibit a local maximum and the direction of electrophoresis can change.