Dynamic H NMR study of 4-methylphenoxyimidoyl azides: conformational or configurational isomerisation?

Dynamic ¹H NMR (500 MHz) investigation of 4-methylphenoxyimidoyl azides (4-CH₃-C₆H₄-O-CN-Y)-N₃, Y=4-CH₃-C₆H₄-SO₂-, 4-Br-C₆H₄-SO₂-, C₆H₅SO₂-, CH₃-SO₂-, -CN in acetone-d₆ at temperature range of 195-280 K is reported. The observed free energy barrier (almost 12 kcal mol⁻¹) is attributed to conformational isomerisation about the N-S bond for Y=4-CH₃-C₆H₄-SO₂-, 4-Br-C₆H₄-SO₂-, C₆H₅SO₂-, CH₃-SO₂- and (almost 14 kcal mol⁻¹) to configurational isomerisation (E/Z) about CN bond for Y=-CN.     

Ethylene addition to OsO3(CH2) - A theoretical study

Quantum chemical calculations at the B3LYP/TZVP level of theory have been carried out for the initial steps of the addition reaction of ethylene to OsO₃(CH₂). The calculations predict that there are two reaction channels with low activation barriers. The kinetically and thermodynamically most favored reaction is the [3+2]_O, C addition which has a barrier of only 2.3 kcal mol⁻¹. The [3+2]_O, O addition has a slightly higher barrier of 6.5 kcal mol⁻¹. Four other reactions of OsO₃(CH₂) with C₂H₄ have significantly larger activation barriers. The addition of ethylene to one oxo group with concomitant migration of one hydrogen atom from ethylene to the methylene ligand yields thermodynamically stable products but the activation energies for the reactions are 16.7 and 20.9 kcal mol⁻¹. Even higher barriers are calculated for the [2+2] addition to the OsO bond (32.6 kcal mol⁻¹) and for the addition to the oxygen atom yielding an oxiran complex (41.2 kcal mol⁻¹). The activation barriers for the rearrangement to the bisoxoosmaoxirane isomer (36.3 kcal mol⁻¹) and for the addition reactions of the latter with C₂H₄ are also quite high. The most favorable reactions of the cyclic isomer are the slightly exothermic [2+2] addition across the OsO bond which has an activation barrier of 46.6 kcal mol⁻¹ and the [3+2]_O, O addition which is an endothermic process with an activation barrier of 44.3 kcal mol⁻¹.     

Tetramidocavitand: strong anion receptor by well-organized four -(CO)N-H?X interactions

Resorcin[4]arene-based tetramidocavitands containing four secondary amide groups on their upper rim showed strong (R = methyl or ethyl) binding properties. The caviplex formation through hydrogen bonds of -(CO)N-H?X⁻ was supported by ¹H NMR and crystal structure analyses. In a mixture of C₂D₂Cl₄/DMSO/D₂O = 5:15:2 at 25 °C, the thermodynamic parameters for caviplex @1, ΔG (kcal mol⁻¹), ΔH (kcal mol⁻¹), and ΔS (cal K⁻¹ mol⁻¹), are −3.7, −8.6, and −16.7, respectively.     

Energy analysis of metal-metal bonding in [RM-MR] (M = Zn, Cd, Hg; R = CH3, SiH3, GeH3, C5H5, C5Me5)

The metal-metal bonds of the title compounds have been investigated with the help of energy decomposition analysis at the DFT/TZ2P level. In good agreement with experiment, computations yield Hg-Hg bond distance in [H₃SiHg-HgSiH₃] of 2.706 Å and Zn-Zn bond distance in [(η⁵-C₅Me₅)Zn-Zn(η⁵-C₅Me₅)] of 2.281 Å. The Cd-Cd bond distances are longer than the Hg-Hg bond distances. Bond dissociation energies (-BDE) for Zn-Zn bonds in zincocene −70.6 kcal/mol in [(η⁵-C₅H₅)₂Zn₂] and −70.3 kcal/mol in [(η⁵-C₅Me₅)₂Zn₂] are greater amongst the compounds under study. In addition, [(η⁵-C₅H₅)₂M₂] is found to have a binding energy slightly larger than those in [(η⁵-C₅Me₅)₂M₂]. The trend of the M-M bond dissociation energy for the substituents R shows for metals the order GeH₃ < SiH₃ < CH₃ < C₅Me₅ < C₅H₅. Electrostatic forces between the metals are always attractive and they are strong (−75.8 to −110.5 kcal/mol). The results demonstrate clearly that the atomic partial charges cannot be taken as a measure of the electrostatic interactions between the atoms. The orbital interaction (covalent bonding) ΔE_orb is always smaller than the electrostatic attraction ΔE_elstat. The M-M bonding in [RM-M-R] (R = CH₃, SiH₃, GeH₃, C₅H₅, C₅Me₅; M = Zn, Cd, Hg) has more than half ionic character (56-64%). The values of Pauli repulsions, ΔE_Pauli, electrostatic interactions, ΔE_elstat, and orbital interactions, ΔE_elstat are larger for mercury compounds as compared to zinc and cadmium.     

2π + 2π cycloaddition kinetics of some fluoro olefins and fluoro vinyl ethers

The second order 2π + 2π homo- and co-dimerization between various classes of fluorinated olefins has been investigated. The fluorinated olefins examined in this study were: (1) R_fOCFCF₂ (perfluorinated vinyl ethers); (2) R_fCFCF₂ (perfluorinated terminal olefins); (3) RCH₂CFCF₂; (4) PhOCFCF₂ (aryl perfluorinated vinyl ethers).Homo-dimerizations between vinyl ethers have an E_a between 20 and 24 kcal mol⁻¹ while homo-dimerizations between terminal olefins have an average E_a between 35 and 40 kcal mol⁻¹; vinyl groups have a second order cyclodimerization rate constant of formation between 1 × 10⁻⁷ and 1 × 10⁻⁴ M⁻¹ S⁻¹ while vinyl ethers have a second order cyclodimerization rate constant of formation = 1 × 10⁻¹ M⁻¹ s⁻¹. If there is a CH₂ group α to the terminal olefin, the E_a of cyclodimerization is about 7 kcal mol⁻¹) lower with respect to those olefins with a CF₂ α to the instauration. At 270 °C co-dimerizations have an average ΔS^≠ = −45 cal K⁻¹ mol⁻¹ and a second order rate constant of cyclodimerization ranging between 0.1 × 10⁻⁴ M⁻¹ S⁻¹ and 16 × 10⁻⁴ M⁻¹ S⁻¹ while homo-dimerizations have an average ΔS^≠ = −17 cal K⁻¹ mol⁻¹ and a second order rate constant which can span from 7 × 10⁻⁷ M⁻¹ S⁻¹ to as much as 1 × 10⁻¹ M⁻¹ S⁻¹ depending on the electronic nature of the perfluorinated terminal olefin.A good correlation between the electronegativity χ and the activation energy E_a demonstrates that “polarizing” groups, O, PhO, α to the olefin play an important role in the formation and stabilization of the cyclodimerization biradical intermediate.     

The phonon-assisted proton transfer between hydrazinium cations in (N2H5)2HMF6·2H2O (M∈{Ga, Al, Fe}) type compounds. FT IR and quantum theoretical study

FT IR spectra of a series of compounds with a general formula (N₂H₅)₂HMF₆·2H₂O (where M∈{Ga, Al, Fe}) were recorded at variable temperatures (from ∼100 to 300 K, at 10 K intervals). The appearance of the spectral region of ν(N-N) modes due to hydrazinium cations further supports the conclusions regarding the N₂H₅⁺?H⁺?N₂H₅⁺ hydrogen bond potential well based on Raman spectroscopic data [J. Raman Spectrosc. 28 (1997) 315]. The appearance of two bands corresponding to the ν(N-N) modes in the low temperature FT IR spectra that merge into one upon heating is a clear evidence of a symmetric potential well through which a phonon-assisted proton transfer (PAPT) occurs at higher temperatures. Ab initio MP2/6-311++G(2d,p) quantum chemical study of the proton transfer potential within the N₂H₅⁺?H⁺?N₂H₅⁺ cluster confirmed its double-minimum character. The first-order saddle point found on the MP2/6-311++G(2d,p) potential energy hypersurface corresponds to a centrosymmetric structure (C_2h symmetry), with the proton placed at the inversion center. The potential energy curve along the tunnelling coordinate was calculated by the intrinsic reaction coordinate (IRC) methodology, leading to an adiabatic PT barrier height of 3.94 kcal mol⁻¹ and a tunneling rate of 1.98 s⁻¹. The corresponding MP4(SDTQ)/6-311++G(2d,p)//MP2/6-311++G(2d,p) value of the adiabatic PT barrier height is 4.26 kcal mol⁻¹.     

Dimeric water embedded within a hydrophobic cavity of tetra-(p-tert-butyl)thiacalix[4]arene

X-ray crystallographic analysis and density functional B3LYP/6-31G(d) calculation confirm that dimeric water is embedded within a hydrophobic cavity of tetra-(p-tert-butyl)thiacalix[4]arene and stabilized by hydrogen bondings of aromatic π?H₂O(1) and methyl?H₂O(2) in the dimeric water inclusion complex with binding energies of 1.4 and 0.9 kcal mol⁻¹ respectively, and by hydrogen bonding formed between H₂O(2) and four phenolic OH groups from an adjacent tetra-(p-tert-butyl)thiacalix[4]arene, with binding energy of 3.8-4.2 kcal mol⁻¹.     

Conformational fluxionality in a palladium(II) complex of flexible click chelator 4-phenyl-1-(2-picolyl)-1,2,3-triazole: A dynamic NMR and DFT study

An experimental and theoretical DFT study was carried out on the solution behavior in [D₇]DMF for bis-chelate complex [Pd(L)₂](BF₄)₂·2CH₃CN (L = 4-phenyl-1-(2-picolyl)-1,2,3-triazole). In structure of [Pd(L)₂]²⁺, the central square-planar palladium(II) cation is trans-chelated by two L substrates, each through the pyridine and the triazole N2 nitrogen atoms, forming two six-membered metallacycles. These can adopt boat-like conformations anti-trans-[Pd(L)₂]²⁺ and syn-trans-[Pd(L)₂]²⁺ in which the picolyl methylene carbons are anti or syn, respectively, relative to the palladium coordination plane. In solution, the boat-to-boat inversion at both metallacycles takes place. The conformers are in a dynamic equilibrium, which was monitored by variable-temperature (VT) ¹H NMR spectroscopy in the temperature range of 223-353 K. The equilibrium lies on the side of the anti-trans-[Pd(L)₂]²⁺ conformer and the corresponding reaction enthalpy and entropy is estimated to be 0.6 ± 0.5 kcal mol⁻¹ and 0.8 ± 1 cal mol⁻¹ K⁻¹, respectively. From the full-line-shape analysis of resonances in the VT ¹H NMR spectra, the activation enthalpy and activation entropy was determined to be 13.0 ± 0.4 kcal mol⁻¹ and 2.7 ± 1.6 cal mol⁻¹ K⁻¹, respectively. The activation entropy close to zero suggests a nondissociative mechanism for the isomerisation. DFT investigation revealed that the isomerisation proceeds through a one step mechanism with a barrier of 11.40 kcal mol⁻¹. The structures of the syn and anti conformers as well as that of the transition state were characterized. Energy decomposition analysis was carried out in order to explore the origins of the stability difference between the syn and anti isomers.     

Kinetic studies on Brook-type isomerization of acylpolysilanes to silenes

First-order rate constants of Brook-type isomerization of acylpolysilanes (Me₃Si)₃SiCOR (R = iso-Pr, tert-Bu, Ad, 2,6-xylyl, and Mes) leading to silenes (Me₃Si)₂SiC(OSiMe₃)R at various temperatures were determined. Their Eyring plots gave kinetic parameters of ΔH^‡ = 26.6-29.4 kcal mol⁻¹ and ΔS^‡ = −11.5 to −14.6 cal mol⁻¹ K⁻¹. The isomerization was accelerated by introducing an electron-donating alkyl substituent on the carbonyl carbon. These results are in accordance with a concerted mechanism involving a four-centered transition state.     

Protonated MF3 (M = N-Bi): Structure, stability, and thermochemistry of the H-MF3 and HF-MF2 isomers

The structure, stability, and thermochemistry of the H(MF₃)⁺ isomers (M = N-Bi) have been investigated by MP2 and coupled cluster calculations. All the HF-MF₂⁺ revealed weakly bound ion-dipole complexes between MF₂⁺ and HF. For M = N, As, Sb, and Bi they are more stable than the H-MF₃⁺ covalent structures (free energy differences) by 6.3, 14.3, 32.1, and 73.5 kcal mol⁻¹, respectively. H-PF₃⁺ is instead more stable than HF-PF₂⁺ by 21.8 kcal mol⁻¹. The proton affinities (PAs) of MF₃ at the M atom range from 91.9 kcal mol⁻¹ (M = Bi) to 156.5 kcal mol⁻¹ (M = P), and follow the irregular periodic trend BiF₃ < SbF₃ < AsF₃ < NF₃ < PF₃. The PAs at the F atom range instead from 131.9 kcal mol⁻¹ (M = P) to 164.9 kcal mol⁻¹ (M = Bi), and increase in the more regular order PF₃ ≈ NF₃ < AsF₃ < SbF₃ < BiF₃. This trend parallels the fluoride-ion affinities of the MF₂⁺ cations. For protonated NF₃ and PF₃, the calculations are in good agreement with the available experimental results. As for protonated AsF₃, they support the formation of HF-AsF₂⁺ rather than the previously proposed H-AsF₃⁺. The calculations indicate also that the still elusive H(SbF₃)⁺ and H(BiF₃)⁺ should be viable species in the gas phase, exothermically obtainable by various protonating agents.     

Theoretical study of the thermochemistry and the kinetics of the SFxCl (x = 0-5) series

A systematic thermodynamic and kinetic study of the entire SF_xCl (x = 0-5) series has been carried out. High-level quantum chemical composite methods have been employed to derive enthalpy of formation values from calculated atomization and isodesmic energies. The resulting values for the SCl, SFCl, SF₂Cl(C₁), SF₃Cl(C_s), SF₄Cl(C_s) and SF₅Cl molecules are 28.0, −36.0, −64.2, −134.3, −158.2 and −237.1 kcal mol⁻¹. A comparison with previous experimental and theoretical values is presented. Statistical adiabatic channel model/classical trajectory, SACM/CT, calculations of selected complex-forming and recombination reactions of F and Cl atoms with radicals of the series have been performed between 200 and 500 K. The reported rate coefficients span over the normal range of about 6 × 10⁻¹² and 5 × 10⁻¹¹ cm³ molecule⁻¹ s⁻¹ expected for this type of barrierless reactions.     

Theoretical study on the (O2-HF) complex

The potential energy surface of the (O₂-HF)⁺ complex has been investigated theoretically. Equilibrium structure has been calculated at the UCCSD/6-311++G(2d,2p) and UCCSD/aug-cc-pVTZ levels of theory. Two stable complexes, T-shape and collinear, have been found on the surface whose interaction energies are calculated to be −12.36 and −10.19 kcal mol⁻¹, respectively, at the UCCSD(T)/aug-cc-pVTZ level after correcting for the basis set superposition error (BSSE). Natural bond orbital (NBO) analysis revealed intermolecular charge transfers occur followed by intramolecular charge rearrangement. A large contribution from the n_F to π* _OO is found.     

Conformational studies by dynamic NMR spectroscopy. Part 96: Stereomutations of highly hindered naphthylphenyl atropisomers in solution and in the solids

When a benzene ring bears two 2-methyl-1-naphthyl moieties in the para, meta or ortho positions as in 1,4-bis(2-methyl-1-naphthyl)benzene, 1, 1,3-bis(2-methyl-1-naphthyl)benzene, 2 and 1,2-bis(2-methyl-1-naphthyl)benzene 3, two rotational isomers (atropisomers) are generated, with the two naphthyl substituents in a syn or anti relationship. In the case of the para and meta derivatives (1 and 2, respectively) these atropisomers could not be separated but were detected by NMR spectroscopy, that also allowed the determination of their syn-anti interconversion barriers in solution (19.5 and 20.4 kcal mol⁻¹, respectively) and, in the case of 2, also in the solid state (26.7 kcal mol⁻¹). In the more hindered ortho derivative 3, the syn (meso) and anti (racemic) atropisomers interconvert in solution with a barrier (31.2 kcal mol⁻¹) sufficiently high to allow their physical separation. The racemic form could also be separated (by enantioselective HPLC) into the PP and MM enantiomers. Analysis of the corresponding CD spectra allowed the assignment of the absolute configuration. When three such naphthyl substituents are bonded to the phenyl in a meta relationship, two atropisomers in statistical proportions were observed: the anti (C_s symmetry) and the syn (C_3v symmetry) display a 3:1 ratio at the equilibrium in solution. This ratio is different in the solid state, as is the interconversion barrier (22.1 and 32.1 kcal mol⁻¹ in solution and in the solid, respectively).     

High basicity of tris-(tetramethylguanidinyl)-phosphine imide in the gas phase and acetonitrile—a DFT study

It is shown by reliable density functional theory (DFT) calculations that compounds 4 and 6 are very powerful neutral organic superbases as evidenced by the calculated proton affinities in the gas phase 305.4 kcal mol⁻¹ (44.8) and 287.8 kcal mol⁻¹ (37.8), respectively, and the corresponding calculated pK_a values in acetonitrile given within parentheses.     

Structures and stereochemical non-rigidity of Si-substituted N-(dimethylsilylmethyl)- and N-(methylphenylsilylmethyl)amides and -lactams

Eleven new silicon-substituted N-(dimethylsilylmethyl)- and N-(methylphenylsilylmethyl)amides and -lactams bearing a chiral carbon in the amide or lactam fragment, and containing the OSiC₃X (X = Hal, OTf) coordination fragment have been synthesized and their structures determined in solution by spectroscopic means. These structures are consistent with the hypervalency model. Quantum chemical calculations adequately reflect correlations between the type of monodentate ligand X and the geometric parameters of the N-C-O-Si-X fragments.The activation parameters for enantiomerization and diastereomerization in these new compounds and the other related compounds were determined by the dynamic NMR (DNMR) method using full line-shape analysis. The free activation energy values in the absence of external nucleophiles vary from 9 to 27 kcal mol⁻¹. The entropies of activation (ΔS^#) are negative (−20 to −50 cal mol⁻¹ K⁻¹) in all cases except for the chloride derivatives of 4-phenyl-2-pyrrolidone and 4-oxazolidinone that have weaker intramolecular O → Si coordination. Irregular mechanisms of permutational isomerization were proposed on the basis of the DNMR data and the results of quantum-chemical calculations carried out by ab initio (HF) and DFT (PBE, B3PW91, 6-311++G(d,p)). Depending on the coordination environment at silicon, the mechanisms proposed involve either the dissociation of the Si-X bond followed by the Berry pseudorotation or similar in the intermediate or the cleavage of intramolecular O-Si bond with subsequent inversion at the silicon atom. The apparently simple pseudorotation mechanism involving only the pentacoordinate structures 1-21 does not appear to be favoured in any of the examples studied.     

Catalytic hydrogenolysis of alkyl halides by sulfido-bridged molybdenum clusters: A density functional study

Density functional theory has been used to explore the mechanism of cleavage of H₂ at a sulfido-bridged molybdenum cluster, CpMo(μ-SH)(μ-S)(μ-S₂CH₂)MoCp. The addition occurs across a single Mo-S bond, and the disruption of the strong Mo-S π bonding in the ground state leads to a very high-lying transition state (+43 kcal mol⁻¹). Once formed, the adsorbed hydrogen migrates over the cluster via a series of hops from metal to sulphur, formally corresponding to a switch from hydridic to protic character. The low barrier (+15 kcal mol⁻¹) for migration leads to facile hydrogenolysis of coordinated substrates.     

Ionic organoboranes. Part 9. Ab initio molecular orbital study of energy, structure, and frontier orbitals of the isomeric [7.7.10]ousenes

We have used HF/3-21G(*) geometry optimization to determine the relative energies, structures, symmetries, and nature of frontier orbitals for the seven isomeric [7.7.10^x,y]ousenes in which two cationic tropyliumyl (C₇H₆⁺-) rings are substituted on the cage of the B₁₀H₁₀²⁻ anion. The x,y=(2,7) isomer is the most stable. Energetically the remaining fall into two groups: (1,10), (2,4), and (1,6) which differ from (2,7) by less than 2 kcal mol⁻¹, and (2,6),(2,3), and (1,2) which differ by about 10 kcal mol⁻¹. The lower stability of the latter group is attributed to repulsive interactions between substituent rings rather than electronic effects. Three ousenes (1,2), (1,10), and (2,3) have lower symmetry than expected for a simple disubstituted B₁₀H₁₀²⁻ cage as a result of steric effects. Examination of frontier orbitals demonstrates that all seven species should show charge transfer excitations from cage to both rings similar to that previously experimentally observed for the [7.10²] hemiousenide ion.     

An experimental and theoretical reinvestigation of the Michael addition of primary and secondary amines to dimethyl acetylenedicarboxylate

Theoretical calculations of the Michael addition of diethylamine, pyrrolidine, and benzylamine to DMAD at the DFT (B3LYP/6-31+G^∗) level indicate that the reaction follows a stepwise mechanism via a zwitterionic intermediate. The reactions have low activation barriers, 13–15 kcal mol⁻¹ and are exothermic, ΔH° = −29 to −44 kcal mol⁻¹. The detailed investigation of the reaction of benzylamine with DMAD reveals participation of the reactant-, transition structure-, and the product-complexes and that the 1,3-prototropic shift occurs through the benzylamine molecule. It also predicts formation of dimethyl 2-(N-benzylimino)butane-1,4-dicarboxylate as one of the products, which has been duly isolated and characterized experimentally.     

High acidity of polycyano azatriquinanes—theoretical prediction by the DFT calculations

It is shown by the B3LYP/6-311+G(2d,p)//B3LYP/6-31G(d) calculations that the hexacyano derivative of aza-acepentalene is an extremely powerful superacid both in the gas phase and in DMSO as evidenced by the ΔH_acid = 255.1  kcal mol⁻¹ and pK_a (DMSO) = −26.5. Its synthesis is strongly recommended, in particular, since the related conjugate base hexachloro aza-acepentalenide anion was prepared recently.     

Solid state and theoretical evaluation of β-fluoroethyl esters indicate a fluorine-ester gauche effect

Single crystal X-ray diffraction studies and a theoretical analysis indicate a preferred conformation for O-β-fluoroethyl esters, where the CF and CO(CO) bonds are gauche rather than anti to each other. The OCCF dihedral angles for three compounds and five independent structures indicate a range of only 63.4-69.6°. Evaluation of a rotational energy profile around this bond in a model system (β-fluoroethyl acetate) predicted a similar dihedral angle and the gauche conformation to be the minimum on the rotational energy profile. High level ab initio calculations measured the gauche conformer to be 0.95 kcal mol⁻¹ lower in energy than the anti conformer and application of a solvation model further increased this differential to 1.6 kcal mol⁻¹, consistent with a previous solution state (NMR) evaluation of this system.