Application of a retention database to the identification of individual polychlorinated biphenyl congeners in Aroclors mixture using selected polychlorinated biphenyls as a reference series

The database of the relative retention times (RRTs) of polychlorinated biphenyls (PCBs) reported in literature was used to calculate the retention indices (RIs) of all 209 PCB congeners on temperature programmed capillary column Rtx-5. Calculation of retention indices was based on reference series of seven congeners (PCB IUPAC Nos. 18, 52, 101, 143, 185, 203 and 206) that exhibit linear relative retention time behaviour as a function of chlorine number. The calculated indices were compared to those determined in our laboratory as well as to those obtained by other authors. The proposed indices system was applied for identification individual congeners in mixture of Aroclors 1242:1254:1260, using only reference series of PCBs.     

Gas chromatographic peak identification for polybrominated diphenyl ethers under different temperature programs

A method has been developed for gas chromatographic peak recognition of polybrominated diphenyl ethers (PBDEs) under different temperature programs. On the basis of an identification database of retention parameters (A, B values) of gas chromatography and retention times of the selected internal standards, the retention times of BDEs can be accurately estimated. In comparison with the experimental retention values, the predicted retention times have been proved to be very accurate. In addition, owing to only a part of BDE analytical standards are available, using 40 BDEs as a training set, the quantitative relationship between retention parameters of BDEs and molecular connectivity indexes has been found. The correlation coefficients are greater than 0.997. The A, B values of all the remaining 169 BDE congeners have been predicted.     

Using new structurally related additive schemes in the precalculation of gas chromatographic retention indices of polychlorinated hydroxybiphenyls on HP-5 stationary phase

A new additive scheme is proposed for the precalculation of gas chromatographic retention indices of complex organic compounds. The principal feature of this approach is the absence of previously calculated I increments for any structural fragments or functional groups in the molecule. Instead, arithmetical operations involving I values of simpler structural analogues of target compounds are used directly. I precalculation for polychlorinated hydroxybiphenyls (839 congeners) on the HP-5 stationary phase was chosen as one of the most important applications of the method under discussion. Such a large number of congeners cannot be obtained as reference samples and their gas chromatographic (GC)-mass spectrometric (MS) identification should therefore be based currently on precalculated I values.     

Large-volume programmed-temperature vaporiser injection for fast gas chromatography with electron capture and mass spectrometric detection of polybrominated diphenyl ethers

A large volume injection fast-GC-MS method has been developed, optimized and evaluated for the determination of polybrominated diphenyl ethers, including the decabrominated diphenyl ether (BDE-209). The programmed-temperature vaporiser injection parameters, temperature programming of the GC oven, and the physical dimensions of the narrow bore GC column were investigated to find the optimal operating conditions for the analysis. Depending on parameter settings the yield of the PBDEs and particularly BDE-209, varies significantly. Volumes up to 125 microl were successfully injected and a fast GC separation was performed, with retention times as short as 6.4 min for the last eluting compound, BDE-209. In a pilot study an air sample, collected at an electronics dismantling facility, was analyzed. Low-resolution mass spectrometry in electron capture negative ion mode was used for detection. Nine BDE congeners, including BDE-209, were identified and quantified.     

How do the substituents affect and regulate the relative retention times of polychlorinated biphenyls during gas chromatography?

The effects and regulatory actions of the polychlorinated biphenyls (PCBs) substituent characteristics on their relative retention times (RRTs) during gas chromatography were analyzed based on known experimental RRTs of 209 PCB congeners and biphenyl; the substituent characteristics used for this analysis included the total amount of substituents, the similarity between two phenyl rings in a single PCB congener, the substituents distribution in single phenyl ring, the main/second‐order interactions effects at each position, and the combined effect of two phenyl rings. At last, the universality of regulation was validated on other experimental conditions. Among them, the full factorial experimental design included 10 factors correlated with each substituent position and two levels (0, 1) were initially applied to the domains of the substituent characteristics. The obtained results have revealed that increasing the total amount of substituents can increase the RRTs of PCBs linearly, but similarities between the two rings cannot control the RRTs effectively. Meanwhile, the more compact the substituent distributions on a single phenyl ring are, the bigger the RRTs of PCBs are. Based on a full factorial experimental design, the overall important trend for each position is as follows: para > meta > ortho and the main regulatory substituents for the second‐order interaction effects are distributed in the same phenyl ring in the following sequence: N_o > N_m > N_p. The congener with two perpendicular phenyl rings exhibits a milder combined effect on RRTs and smaller RRT relatively. The regulation has a good universality among different experimental conditions, revealing the dominant effect of substituent characteristics on RRTs of PCBs. Copyright © 2015 John Wiley & Sons, Ltd.     

Determination of polybrominated diphenyl ethers in indoor dust standard reference materials

Polybrominated diphenyl ethers (PBDEs) have been measured for the first time in three different indoor dust Standard Reference Materials (SRMs) prepared by the National Institute of Standards and Technology (NIST). Two of these, SRM 2583 (Trace Elements in Indoor Dust) and SRM 2584 (Trace Elements in Indoor Dust), have been certified previously for lead and other inorganic constituents. A third, SRM 2585 (Organics in Indoor Dust), is a new indoor dust reference material prepared by NIST which will be certified for various organic compounds (polycyclic aromatic hydrocarbons, pesticides and polychlorinated biphenyls) in 2005 including certified concentrations for 16 individual PBDE congeners and reference values for an additional three PBDE congeners. Dust SRMs were analyzed for 30 PBDE congeners using high-resolution gas chromatography combined with low-resolution mass spectrometry operated in both negative chemical ionization (GC/ECNI–MS) and electron impact ionization (GC/EI–MS) modes. Sensitivity was an order of magnitude higher using GC/ECNI–MS relative to GC/EI–MS. These SRMs have been characterized and compared to the three PBDE commercial products (pentaBDE, octaBDE and decaBDE). PentaBDE and DecaBDE were present in all three SRMs and were the dominant commercial products, making up approximately 33% and 58%, respectively. Recent studies suggest that house dust may be a leading source of human exposure to PBDEs. These SRMs are the first reference materials with certified concentrations for PBDEs, which will aid in validating future measurements of PBDEs in house dust and other similar matrices. Electronic Supplementary Material Supplementary material is available for this article at http://dx.doi.org/ 10.1007/s00216-005-0227-y     

Effects of pressure drop on absolute retention matching in comprehensive two-dimensional gas chromatography

Comprehensive two-dimensional gas chromatography (GC x GC) analysis has the capability to resolve many more components of complex mixtures than traditional single column GC analysis. There is an increasing need to provide reliable identification of these separated components; time-of-flight mass spectrometry (TOFMS) is the most appropriate technology to achieve this task. Rather than require MS for all GC x GC separations, it is desirable to assign peak identities to specific peak positions in the GC x GC separation space, and this necessitates matching peak retentions in the two experiments - GC x GC-FID and GC x GC-TOFMS. The atmospheric vs. vacuum outlet conditions confound this task. It is shown here that by employing a supplementary gas supply, provided to a T-union between the column outlet and the MS interface, it is possible to generate 2D chromatograms for GC x GC-FID and GC x GC-TOFMS that are essentially exactly matched. There is no degradation in separation performance or efficiency in the second column in the system interfaced to the T-union. Since the GC x GC-FID experiment uses hydrogen for maximum efficiency, and GC x GC-TOFMS uses helium carrier, translation of (conditions/retentions) must account for the different viscosities of the carrier gases. Translation of conditions is based on well-known principles established in single column analysis. Tabulated data illustrate that retention reproducibility was of the order of better than 4 s for the average first dimension retention difference, and about 40 ms for the average second dimension retention difference when comparing GC x GC-FID and GC x GC-TOFMS results. This should provide considerable support for identification in routine GC x GC-FID analysis of specific sample types, once the peaks in 2D separation space have been assigned identities through GC x GC-TOFMS analysis.     

Quantitative analysis of polybrominated diphenyl ethers in adipose tissue, human serum and foodstuff samples by gas chromatography with ion trap tandem mass spectrometry and isotope dilution

A method based on gas chromatography (GC) separation followed by ion trap tandem mass spectrometry detection in EI mode (ITD-MS/MS), using isotope dilution, was developed for the determination of ten native polybrominated diphenyl ethers (PBDEs) and four (13)C(12)-labeled congeners in biological (fat tissue and human serum) and food samples. The highest-mass fragment ions were used as precursor ions for those congeners with molecular ions with m/z values higher than the maximum of the instrument. In these cases (hepta-BDEs and (13)C(12)-hexa-BDEs) no fragmentation was achieved under the experimental conditions employed. Repeatability (lower than 9%) and reproducibility (lower than 13%), expressed as relative standard deviation (RSD, n = 3 and 4, respectively), were satisfactory. Similarly, the coefficient of variation (n = 4) of the isotopic ratio between the two most abundant product ions was lower than 10 and 6% for native and labeled congeners, respectively. To evaluate the feasibility of the method, the optimized isotope dilution GC/ITD-MS/MS method was used for the quantitation of selected PBDE congeners in different samples including adipose tissue, human serum and foodstuff samples, from three inter-laboratory comparative exercises, covering a wide range of concentrations. A solid-phase extraction procedure, previously developed for PCB determination in small-size bird serum samples, was successfully applied to quantification of PBDEs in 1 mL samples of human serum.     

非等间隔PCBs保留指数体系在光解行为研究中的应用

利用Ｃｈｕ等已建立的多氯联苯（ＰＣＢｓ）非等间隔保留指数体系,由文献中的相对保留时间计算出全部２０９种ＰＣＢｓ同类物（Ｃｏｎｇｅｎｅｒ）的保留指数（ＩＰＣＢ）。利用ＩＰＣＢ结合ＧＣ－ＭＳ对ＰＣＢ８７、ＰＣＢ１３８和ＰＣＢ１６９三种同类物的光解产物进行了定性分析,发现其光解产物主要为低氯代联苯。实验结果证明,非等间隔保留指数体系ＩＰＣＢ在ＰＣＢｓ同类物的定性分析中具有准确、实用、快捷、方便等优点。     

Simultaneous parameter compensation in the replication of programmed temperature gas chromatographic retention measurements

Tables of relative retention times, retention indices or emergence temperatures obtained under one set of chromatographic conditions can be used for the tentative identification of unknowns determined under an entirely different set of conditions. This can be accomplished for a particular liquid phase if the emergence temperature of a reference compound is maintained while one or more chromatographic parameters are changed to compensate for the changes in other parameters. The advantage of using proximal standards for the determination of both relative retention times and emergence temperatures is demonstrated in this report.     

Microwave-assisted extraction (MAE) for the determination of polybrominated diphenylethers (PBDEs) in sewage sludge

An efficient microwave-assisted extraction (MAE) method has been developed and evaluated for the quantification of eight major polybrominated diphenylethers (PBDEs) in sewage sludge. The PBDEs were extracted from wet and dry sludge in a microwave extraction unit using a hexane/acetone mixture for 35 min at a controlled temperature of 130 °C. The extract was concentrated, cleaned up on a silica gel column, and analyzed by gas chromatography/mass spectrometry (GC/MS) in the negative chemical ionization (NCI) mode. The MAE procedure exhibited higher extraction efficiency, specifically for BDE (brominated diphenylether) 209, than the conventional Soxhlet extraction. The test congeners were clearly separated under specific instrumental operating conditions, at a source temperature of 230 °C and a column length of 20 m. The present analytical method showed recovery efficiencies ranging from 80 to 110% when applied to the PBDE-free sludge spiked with eight PBDE congeners. The efficiency of the MAE method was confirmed using sludge obtained from four sewage treatment plants (STPs). The results indicate that BDE 47, 99, and 209 are the most abundant congeners present in these sewage sludges, which is consistent with previous reports.     

基于深度学习的保留时间预测方法的研究进展及应用

在基于液相色谱-质谱联用的蛋白质组学研究中,肽段的保留时间作为有效区分不同肽段的特征参数,可以根据肽段自身的序列等信息对其进行预测。使用预测得到的保留时间辅助质谱数据鉴定肽段序列可以提高鉴定的准确性,因此对保留时间预测的工作一直受到领域内的广泛关注。传统的保留时间预测方法通常是根据氨基酸序列计算肽段的理化性质,进而计算肽段在特定色谱条件下的保留时间。近年来,深度学习方法取得了极大的进展,在蛋白质组学研究中发挥着越来越重要的作用。目前已发展出了多种基于深度学习的保留时间预测方法,与传统的保留时间预测方法相比有着更高的准确度,易于跨平台使用,并且能对修饰肽段的保留时间进行预测。但对某些复杂的修饰,如糖基化修饰等的预测结果还不够准确。如何进一步提高对修饰肽段预测的准确性是基于深度学习的保留时间预测方法的重要研究方向。这些预测的保留时间被应用于肽段鉴定的质量控制和方法评估,以及与预测的二级质谱谱图结合,建立模拟谱图库等方面。该文综述了深度学习方法在保留时间预测领域的最新研究进展以及应用成果,同时对其发展趋势和未来的应用方向进行了展望,以期为保留时间预测研究以及蛋白质组鉴定工作提供参考。     

Determination of retention indices in constant inlet pressure mode and conversion among different column temperature conditions in comprehensive two-dimensional gas chromatography

A method to determine the second dimensional real retention time, dead times on both dimensions and retention indices in constant inlet pressure mode was developed in comprehensive two-dimensional gas chromatography. At the same time, the conversion of GC x GC retention indices among different column temperature conditions were also conducted based on some thermodynamics parameters. The calculation accuracies are better than 1.0 retention index unit. Furthermore, a retention index database was developed and used to identify the compounds in a cigarette essential oil sample. It showed that identification by the database was of close agreement with by time-of-flight mass spectrometry, and some isomers could also be distinguished based on the retention index database.     

Predicting gas chromatographic retention times of 209 polybrominated diphenyls (PBBs) for different temperature programs

A method has been developed to predict the retention times of 209 individual polybrominated diphenyl congeners for different temperature programs. The retention equations lnk=A+B/T of five PBBs in gas chromatography (GC) were used to evaluate the properties of the regression coefficients A and B, which are widely accepted as being highly reliable chromatographic retentions. The quantitative relationships between the A and B values of PCBs and those of PBBs were found. The regression equations derived have coefficients of determination greater than 0.999. The A, B values of any PBB can be predicted by using the A, B values of the PCB according to these relationships. Using these predicted A and B values, the retention times of all PBBs can be predicted. This is an important advance in the identification of PBBs because at present there are only a few PBB standards available.