Assessing the Influence of Mutation on GTPase Transition States by Using X‐ray Crystallography, 19F NMR,and DFT Approaches

We report X‐ray crystallographic and ¹⁹F NMR studies of the G‐protein RhoA complexed with MgF₃⁻, GDP, and RhoGAP, which has the mutation Arg85′Ala. When combined with DFT calculations, these data permit the identification of changes in transition state (TS) properties. The X‐ray data show how Tyr34 maintains solvent exclusion and the core H‐bond network in the active site by relocating to replace the missing Arg85′ sidechain. The ¹⁹F NMR data show deshielding effects that indicate the main function of Arg85′ is electronic polarization of the transferring phosphoryl group, primarily mediated by H‐bonding to O^3G and thence to P^G. DFT calculations identify electron‐density redistribution and pinpoint why the TS for guanosine 5′‐triphosphate (GTP) hydrolysis is higher in energy when RhoA is complexed with RhoGAP_Arg85′Ala relative to wild‐type (WT) RhoGAP. This study demonstrates that ¹⁹F NMR measurements, in combination with X‐ray crystallography and DFT calculations, can reliably dissect the response of small GTPases to site‐specific modifications.     

19F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA‐Catalyzed GTP Hydrolysis

Molecular details for RhoA/GAP catalysis of the hydrolysis of GTP to GDP are poorly understood. We use ¹⁹F NMR chemical shifts in the MgF₃^? transition state analogue (TSA) complex as a spectroscopic reporter to indicate electron distribution for the γ‐PO₃^? oxygens in the corresponding TS, implying that oxygen coordinated to Mg has the greatest electron density. This was validated by QM calculations giving a picture of the electronic properties of the transition state (TS) for nucleophilic attack of water on the γ‐PO₃^? group based on the structure of a RhoA/GAP‐GDP‐MgF₃^? TSA complex. The TS model displays a network of 20 hydrogen bonds, including the GAP Arg85′ side chain, but neither phosphate torsional strain nor general base catalysis is evident. The nucleophilic water occupies a reactive location different from that in multiple ground state complexes, arising from reorientation of the Gln‐63 carboxamide by Arg85′ to preclude direct hydrogen bonding from water to the target γ‐PO₃^? group.     

Through‐space 19F–19F spin–spin coupling in ortho‐fluoro Z‐azobenzene

We report through‐space (TS) ¹⁹F–¹⁹F coupling for ortho‐fluoro‐substituted Z ‐azobenzenes. The magnitude of the TS‐coupling constant (^TSJ_FF) ranged from 2.2–5.9 Hz. Using empirical formulas reported in the literature, these coupling constants correspond to non‐bonded F–F distances (d_FF) of 3.0–3.5 Å. These non‐bonded distances are significantly smaller than those determined by X‐ray crystallography or density functional theory, which argues that simple models of ¹⁹F–¹⁹F TS spin–spin coupling solely based d_FF are not applicable. ¹H, ¹³C and ¹⁹F data are reported for both the E and Z isomers of ten fluorinated azobenzenes. Density functional theory [B3YLP/6‐311++G(d,p)] was used to calculate ¹⁹F chemical shifts, and the calculated values deviated 0.3–10.0 ppm compared with experimental values. Copyright © 2015 John Wiley & Sons, Ltd.     

Simultaneous endo and exo Complex Formation of Pyridine[4]arene Dimers with Neutral and Anionic Guests

The formation of complexes between hexafluorophosphate (PF₆⁻) and tetraisobutyloctahydroxypyridine[4]arene has been thoroughly studied in the gas phase (ESI‐QTOF‐MS, IM‐MS, DFT calculations), in the solid state (X‐ray crystallography), and in chloroform solution (¹H, ¹⁹F, and DOSY NMR spectroscopy). In all states of matter, simultaneous endo complexation of solvent molecules and exo complexation of a PF₆⁻ anion within a pyridine[4]arene dimer was observed. While similar ternary complexes are often observed in the solid state, this is a unique example of such behavior in the gas phase.     

An Approach to 1,3,4‐Dioxaphospholane Complexes through an Acid‐Induced Ring Expansion of an Oxaphosphirane Complex: The Problem of Construction and Deconstruction of O,P‐Heterocycles

Treatment of oxaphosphirane complex 1 , triflic acid (TfOH), and various aldehydes yielded 1,3,4‐dioxaphospholane complexes 5a , b – 7a , b after deprotonation with NEt₃. In addition to NMR spectroscopy, IR spectroscopy, and MS data, the X‐ray structures of complexes 5a and 7a were determined. ³¹P NMR spectroscopic monitoring and DFT calculations provided insight into the reaction course and revealed the transient TfOH 1,3,4‐dioxaphospholanium association complex TfOH‐ 5a , b and/or TfOH‐ 5a , b′ as key reactive intermediates. Furthermore, it was observed that the five‐membered ring system was cleaved upon warming and yielded side‐on (E,Z)‐methylenephosphonium complexes 8a , b if deprotonation did not occur at low temperature. Overall, a novel temperature‐ and acid‐dependent construction and deconstruction process of the 1,3,4‐dioxaphospholane ring system is described.     

Exploring the Molecular Structure of Imidazolium–Silica‐Based Nanoparticle Networks by Combining Solid‐State NMR Spectroscopy and First‐Principles Calculations

A DFT‐based molecular model for imidazolium–silica‐based nanoparticle networks (INNs) is presented. The INNs were synthesized and characterized by using small‐angle X‐ray scattering (SAXS), NMR spectroscopy, and theoretical ab initio calculations. ¹¹B and ³¹P HETCOR CP MAS experiments were recorded. Calculated ¹⁹F NMR spectroscopy results, combined with the calculated anion–imidazolium (IM) distances, predicted the IM chain density in the INN, which was also confirmed from thermogravimetric analysis/mass spectrometry results. The presence of water molecules trapped between the nanoparticles is also suggested. First considerations on possible π–π stacking between the IM rings are presented. The predicted electronic properties confirm the photoluminescence emissions in the correct spectral domain.     

Push–Pull Buta‐1,2,3‐trienes: Exceptionally Low Rotational Barriers of Cumulenic CC Bonds and Proacetylenic Reactivity

A variety of asymmetrically donor–acceptor‐substituted [3]cumulenes (buta‐1,2,3‐trienes) were synthesized by developed procedures. The activation barriers to rotation ΔG^≠ were measured by variable temperature NMR spectroscopy and found to be as low as 11.8 kcal mol^?1, in the range of the barriers for rotation around sterically hindered single bonds. The central C?C bond of the push–pull‐substituted [3]cumulene moiety is shortened down to 1.22 Å as measured by X‐ray crystallography, leading to a substantial bond length alternation (BLA) of up to 0.17 Å. All the experimental results are supported by DFT calculations. Zwitterionic transition states (TS) of bond rotation confirm the postulated proacetylenic character of donor–acceptor [3]cumulenes. Additional support for the proacetylenic character of these chromophores is provided by their reaction with tetracyanoethene (TCNE) in a cycloaddition‐retroelectrocyclization (CA–RE) cascade characteristic of donor‐polarized acetylenes.     

Stabilization of [WF5]+ by Bidentate N‐Donor Ligands

Transition‐metal hexafluorides do not exhibit fluoride‐ion donor properties in the absence of donor ligands. We report the first synthesis of donor‐stabilized [MF₅]⁺ derived from a transition‐metal hexafluoride via fluoride‐ion abstraction using WF₆(L) (L=2,2′‐bipy, 1,10‐phen) and SbF₅(OSO) in SO₂. The [WF₅(L)][Sb₂F₁₁] salts and [WF₅(1,10‐phen)][SbF₆]?SO₂ have been characterized by X‐ray crystallography, Raman spectroscopy, and multinuclear NMR spectroscopy. The reaction of WF₆(2,2′‐bipy) with an equimolar amount of SbF₅(OSO) reveals an equilibrium between [WF₅(2,2′‐bipy)]⁺ and the [WF₄(2,2′‐bipy)₂]²⁺ dication, as determined by ¹⁹F NMR spectroscopy. The geometries of the cations in the solid state are reproduced by gas‐phase geometry optimizations (DFT‐B3LYP), and NBO analyses reveal that the positive charges of the cations are stabilized primarily by compensatory σ‐electron donation from the N‐donor ligands.     

NMR Spectroscopic Characterization of Isocyano‐ and 1, 1′‐Diisocyanoferrocene. The Molecular Structure of Isocyanoferrocene

Isocyanoferrocene ( 1 ) and 1, 1′‐diisocyanoferrocene ( 2 ) were prepared and studied by ¹H, ¹³C, ¹⁴N and ⁵⁷Fe NMR spectroscopy in order to gain a more complete data set. The NMR data of 1 (chemical shifts and coupling constants) were calculated by DFT methods [B3LYP/6‐311+G(d, p)] and compare favourably with experimental data. The molecular structure of 1 was determined by X‐ray structural analysis, and an almost undistorted ferrocene‐like geometry was found.     

Study of the structure of 1‐hydroxymethylindazole and 1‐hydroxymethylbenzotriazole by X‐ray crystallography,multinuclear NMR in solution and DFT calculations

1‐Hydroxymethylindazole and 1‐hydroxymethylbenzotriazole have been studied in solution by ¹H, ¹³C and ¹⁵N NMR spectroscopy and the X‐ray structure of the second compound determined. DFT and GIAO calculations have been used to discuss geometries, energies (comparatively with 2‐substituted isomers) and NMR chemical shifts.     

A Highly Asymmetric Gold(III) η3‐Allyl Complex

A highly asymmetric Au^III η³‐allyl complex has been generated by treating Au(η¹‐allyl)Br(tpy) (tpy=2‐(p‐tolyl)pyridine) with AgNTf₂. The resulting η³‐allyl complex has been characterized by NMR spectroscopy and X‐ray crystallography. DFT calculations and variable temperature ¹H NMR suggest that the allyl ligand is highly fluxional.     

Copper Causes Regiospecific Formation of C4F8‐Containing Six‐Membered Rings and their Defluorination/Aromatization to C4F4‐Containing Rings in Triphenylene/1,4‐C4F8I2 Reactions

The presence of Cu in reactions of triphenylene (TRPH) and 1,4‐C₄F₈I₂ at 360 °C led to regiospecific substitution of TRPH ortho C(β) atoms to form C₄F₈‐containing rings, completely suppressing substitution on C(α) atoms. In addition, Cu caused selective reductive‐defluorination/aromatization (RD/A) to form C₄F₄‐containing aromatic rings. Without Cu, the reactions of TRPH and 1,4‐C₄F₈I₂ were not regiospecific and no RD/A was observed. These results, supported by DFT calculations, are the first examples of Cu‐promoted 1) regiospecific perfluoroannulation, 2) preparative C?F activation, and 3) RD/A. HPLC‐purified products were characterized by X‐ray diffraction, low‐temperature PES, and ¹H/¹⁹F NMR.     

Palladium(II) Acetylide Complexes with Pincer‐Type Ligands: Photophysical Properties,Intermolecular Interactions,and Photo‐cytotoxicity

Two classes of cationic palladium(II) acetylide complexes containing pincer‐type ligands, 2,2′:6′,2′′‐terpyridine (terpy) and 2,6‐bis(1‐butylimidazol‐2‐ylidenyl)pyridine (C^N^C), were prepared and structurally characterized. Replacing terpy with the strongly σ‐donating C^N^C ligand with two N‐heterocyclic carbene (NHC) units results in the Pd^II acetylide complexes displaying phosphorescence at room temperature and stronger intermolecular interactions in the solid state. X‐ray crystal structures of [Pd(terpy)(C≡CPh)]PF₆ ( 1 ) and [Pd(C^N^C)(C≡CPh)]PF₆ ( 7 ) reveal that the complex cations are arranged in a one‐dimensional stacking structure with pair‐like Pd^II⋅⋅⋅Pd^II contacts of 3.349 Å for 1 and 3.292 Å for 7 . Density functional theory (DFT) and time‐dependent density functional theory (TD‐DFT) calculations were used to examine the electronic properties. Comparative studies of the [Pt(L)(C≡CPh)]⁺ analogs by ¹H NMR spectroscopy shed insight on the intermolecular interactions of these Pd^II acetylide complexes. The strong Pd−C_carbene bonds render 7 and its derivative sufficiently stable for investigation of photo‐cytotoxicity under cellular conditions.     

Synthesis,Crystal Structure,Photophysical and Electrochemical Properties of rac‐6,13‐Dihydro‐6,13‐methanopentacene

The title compound, rac‐6,13‐dihydro‐6,13‐methanopentacene ( 1 ), has been synthesized and characterized by elemental analysis, FT‐IR, ¹H NMR, UV‐Vis, HRMS spectra, cyclic voltammetry and single‐crystal X‐ray diffraction. The crystal belongs to orthorhombic, space group P2₁2₁2₁, with Z = 4 and cell dimensions a = 6.0185(4), b = 8.1914(6), c = 31.4080(19) Å. In the crystal structure, two types of intermolecular C–H···π hydrogen bonds are observed, and further stabilize the crystal structure. Its photophysical and electrochemical properties and complementary density functional theory (DFT) calculations are reported.     

Multiple Pentafluorophenylation of 2,2,3,3,5,6,6‐Heptafluoro‐3,6‐dihydro‐2H‐1,4‐oxazine with an Organosilicon Reagent: NMR and DFT Structural Analysis of Oligo(perfluoroaryl) Compounds

The reagent Me₃Si(C₆F₅) was used for the preparation of a series of perfluorinated, pentafluorophenyl‐substituted 3,6‐dihydro‐2H‐1,4‐oxazines ( 2 – 8 ), which, otherwise, would be very difficult to synthesize. Multiple pentafluorophenylation occurred not only on the heterocyclic ring of the starting compound 1 (Scheme), but also in para position of the introduced C₆F₅ substituent(s) leading to compounds with one to three nonafluorobiphenyl (C₁₂F₉) substituents. While the tris(pentafluorophenyl)‐substituted compound 3 could be isolated as the sole product by stoichiometric control of the reagent, the higher‐substituted compounds 5 – 8 could only be obtained as mixtures. The structures of the oligo(perfluoroaryl) compounds were confirmed by ¹⁹F‐ and ¹³C‐NMR, MS, and/or X‐ray crystallography. DFT simulations of the ¹⁹F‐ and ¹³C‐NMR chemical shifts were performed at the B3LYP‐GIAO/6‐31++G(d,p) level for geometries optimized by the B3LYP/6‐31G(d) level, a technique that proved to be very useful to accomplish full NMR assignment of these complex products.     

Discriminating Halogen‐Bonding from Other Noncovalent Interactions by a Combined NOE NMR/DFT Approach

Herein a combined NOE NMR/DFT methodology to discriminate between adducts held together by halogen bonding (XB) and other noncovalent interactions (non‐XB, such as lone pair/π), based on the determination of the XB donors′ and acceptors′ relative orientation, is proposed. In particular, ¹⁹F,¹H HOESY NMR spectroscopy experiments and DFT calculations on different XB donors, such as perfluorohexyl iodide ( I1 ), iodopentafluorobenzene ( I2 ) and bromopentafluorobenzene ( Br ), combined with different Lewis bases, such as 1,4‐diazabicyclo[2.2.2]octane ( DABCO ) and 2,4,6‐trimethylpyridine ( Me₃Py ), were performed. The results clearly show that in the case DABCO / I1 the XB adduct is practically the only one present in solution, whereas for the other pairs a certain amount of non‐XB adduct is present. Combining DFT and HOESY results, the amount of non‐XB adducts can be roughly quantified under our experimental conditions as 4 % for DABCO / I2 , between 10 and 20 % for Me₃Py / I1 and Me₃Py / I2 , and 44 % for DABCO / Br.     

1H,89Y HMQC and Further NMR Spectroscopic and X‐ray Diffraction Investigations on Yttrium‐Containing Complexes Exhibiting Various Nuclearities

2D ¹H,⁸⁹Y heteronuclear shift correlation through scalar coupling has been applied to the chemical‐shift determination of a set of yttrium complexes with various nuclearities. This method allowed the determination of ⁸⁹Y NMR data in a short period of time. Multinuclear NMR spectroscopy as function of temperature, PGSE NMR‐diffusion experiments, heteronuclear NOE measurements, and X‐ray crystallography were applied to determine the structures of [Y₅(OH)₅(L ‐Val)₄(Ph₂acac)₆] ( 1 ) (Ph₂acac=dibenzoylmethanide, L ‐Val=L ‐valine), [Y( 2 )(OTf)₃] ( 3 ), and [Y₂( 4 )(OTf)₅] ( 5 ) ( 2 : [(S)P{N(Me)N?C(H)Py}₃], 4 : [B{N(Me)N?C(H)Py}₄]^?) in solution and in the solid state. The structures found in the solid state are retained in solution, where averaged structures were observed. NMR diffusion measurements helped us to understand the nuclearity of compounds 3 and 5 in solution. ¹H,¹⁹F HOESY and ¹⁹F,¹⁹F EXSY data revealed that the anions are specifically located in particular regions of space, which nicely correlated with the geometries found in the X‐ray structures.     

Multinuclear Solid‐State Magnetic Resonance as a Sensitive Probe of Structural Changes upon the Occurrence of Halogen Bonding in Co‐crystals

Although the understanding of intermolecular interactions, such as hydrogen bonding, is relatively well‐developed, many additional weak interactions work both in tandem and competitively to stabilize a given crystal structure. Due to a wide array of potential applications, a substantial effort has been invested in understanding the halogen bond. Here, we explore the utility of multinuclear (¹³C, ^14/15N, ¹⁹F, and ¹²⁷I) solid‐state magnetic resonance experiments in characterizing the electronic and structural changes which take place upon the formation of five halogen‐bonded co‐crystalline product materials. Single‐crystal X‐ray diffraction (XRD) structures of three novel co‐crystals which exhibit a 1:1 stoichiometry between decamethonium diiodide (i.e., [(CH₃)₃N⁺(CH₂)₁₀N⁺(CH₃)₃][2 I^?]) and different para‐dihalogen‐substituted benzene moieties (i.e., p‐C₆X₂Y₄, X=Br, I; Y=H, F) are presented. ¹³C and ¹⁵N NMR experiments carried out on these and related systems validate sample purity, but also serve as indirect probes of the formation of a halogen bond in the co‐crystal complexes in the solid state. Long‐range changes in the electronic environment, which manifest through changes in the electric field gradient (EFG) tensor, are quantitatively measured using ¹⁴N NMR spectroscopy, with a systematic decrease in the ¹⁴N quadrupolar coupling constant (C_Q) observed upon halogen bond formation. Attempts at ¹²⁷I solid‐state NMR spectroscopy experiments are presented and variable‐temperature ¹⁹F NMR experiments are used to distinguish between dynamic and static disorder in selected product materials, which could not be conclusively established using solely XRD. Quantum chemical calculations using the gauge‐including projector augmented‐wave (GIPAW) or relativistic zeroth‐order regular approximation (ZORA) density functional theory (DFT) approaches complement the experimental NMR measurements and provide theoretical corroboration for the changes in NMR parameters observed upon the formation of a halogen bond.     

Synthesis,Characterization, and Electrochemistry of the Manganese(I) Complexes of meso‐Substituted [14]Tribenzotriphyrins(2.1.1)

Metalation of 6,13,20,21‐tetraaryl‐22H‐[14]tribenzotriphyrins(2.1.1) (TriP, 1 a – d ) with [Mn(CO)₅Br] provided Mn^I tricarbonyl complexes of [14]tribenzotriphyrins(2.1.1) 2 a – d in 85–93 % yield. The complexes were characterized by mass spectrometry and UV/Vis absorption, IR, and NMR spectroscopy. Single‐crystal X‐ray analyses revealed that 2 b and 2 c adopt bowl‐shaped conformations. The redox properties of [(TriP)Mn^I(CO)₃] ( 2 a – d ) were studied by cyclic voltammetry. Each compound undergoes two reversible one‐electron reductions to form a porphyrin π anion radical and a dianion in CH₂Cl₂. Two oxidation waves were observed, the first of which corresponds to a metal‐centered electron‐transfer process. The redox potentials of 2 a – d are consistent with the optical spectroscopic data and the relatively narrow HOMO–LUMO gaps that were predicted in DFT calculations. The optical spectra can be assigned by using Michl’s perimeter model. TDDFT calculations predict the presence of several metal‐to‐ligand charge‐transfer bands in the L‐band region between 500 and 700 nm.     

[Am(C5Me4H)3]: An Organometallic Americium Complex

We report the small‐scale synthesis, isolated yield, single‐crystal X‐ray structure, ¹H NMR solution spectroscopy /solid‐state UV/Vis‐nIR spectroscopy, and density functional theory (DFT)/ab initio wave function theory calculations on an Am³⁺ organometallic complex, [Am(C₅Me₄H)₃] ( 1 ). This constitutes the first quantitative data on Am?C bonding in a molecular species.