Nonlinear molecular excitations in a completely inhomogeneous DNA chain

We study the nonlinear dynamics of a completely inhomogeneous DNA chain which is governed by a perturbed sine-Gordon equation. A multiple scale perturbation analysis provides perturbed kink-antikink solitons to represent open state configuration with small fluctuation. The perturbation due to inhomogeneities changes the velocity of the soliton. However, the width of the soliton remains constant.     

Engineering solitons and breathers in a deformed ferromagnet: Effect of localised inhomogeneities

We investigate the soliton dynamics of the electromagnetic wave propagating in an inhomogeneous or deformed ferromagnet. The dynamics of magnetization and the propagation of electromagnetic waves are governed by the Landau–Lifshitz–Maxwell (LLM) equation, a certain coupling between the Landau–Lifshitz and Maxwell's equations. In the framework of multiscale analysis, we obtain the perturbed integral modified KdV (PIMKdV) equation. Since the dynamic is governed by the nonlinear integro-differential equation, we rely on numerical simulations to study the interaction of its mKdV solitons with various types of inhomogeneities. Apart from simple one soliton experiments with periodic or localised inhomogeneities, the numerical simulations revealed an interesting dynamical scenario where the collision of two solitons on a localised inhomogeneity create a bound state which then produces either two separated solitons or a mKdV breather.     

Soliton Structures in a Molecular Chain Model with Saturation

In the present work, we study, by means of a one-dimensional lattice model, the collective excitations corresponding to intra molecular ones of a chain like proteins. It is shown that such excitations are described by the nonlinear Schrödinger equation with saturation. The solutions obtained here are the bell solitons, bubbles, kinks and crowdons. Since they belong to different sectors on the parametric space, the bubble condensation could give rise to some important changes of phase in this nonlinear system. Additionally, it is shown that the limiting velocity of the solitons is the velocity of sound waves corresponding to longitudinal vibrations of molecules.     

Propagation of discrete solitons in inhomogeneous networks

In many physical applications solitons propagate on supports whose topological properties may induce new and interesting effects. In this paper, we investigate the propagation of solitons on chains with a topological inhomogeneity generated by inserting a finite discrete network on a chain. For networks connected by a link to a single site of the chain, we derive a general criterion yielding the momenta for perfect reflection and transmission of traveling solitons and we discuss solitonic motion on chains with topological inhomogeneities.     

Soliton stability in a square lattice model of an inhomogeneous helimagnet

In this paper, we propose a square lattice model to study the nonlinear spin excitationsof an inhomogeneous helimagnet with bilinear, twist and anisotropic interactions in thesemi classical limit. The dynamics is found to be governed by a nonlinear partialdifferential equation (pde) in (2 +1) dimensions. The nonlinear excitations and the influence of differenttypes of interactions are investigated using a perturbation technique. The effect ofinhomogeneities in the system is demonstrated graphically in terms of solitonstability.     

Spatial solitons in an optical lattice with varying diffraction and spatially inhomogeneous nonlinearity

In this paper, we present the (1+1)-dimensional inhomogeneous nonlinear Schrödinger (NLS) equation that describes the propagation of optical waves in nonlinear optical systems exhibiting optical lattice, inhomogeneous nonlinearity and varying diffraction at the same time. A series of interesting properties of spatial solitons are found from the numerical calculations, such as the stable propagation in the a nonperiodic optical lattice induced by periodic diffraction variations and periodic nonlinearity variations. Finally, the interaction of neighboring spatial solitons in a nonperiodic optical lattice is discussed, and the results reveal that two spatial solitons can propagate periodically and separately in the optical lattice without interaction.     

Survey of cosmological models with gravitational,scalar and electromagnetic waves

This paper gives an overview and reviews some recent investigations of anisotropic and inhomogeneous models. A class of models, which admit an Abelian two-parameter group of isometries, is considered in detail. Within this class of models we present exact solutions of the Einstein field equations. These solutions describe inhomogeneous cosmological models containing gravitational, scalar and electromagnetic waves. The solutions are used to study the effect of the symmetry breaking in corresponding Bianchi models. The nonlinear dynamics of primordial inhomogeneities is considered. The global evolution of the inhomogeneous models considered is also investigated. Finally we discuss the validity of various assumptions, used in the earlier treatments of inhomogeneous models.     

Transport of Nonautonomous Solitons in Two‐Dimensional Disordered Media

Transport of localized nonlinear excitations in disordered media is an interesting and important topic in modern physics. Investigated in this work is transport of two‐dimensional (2D) solitons for a nonlinear Schrödinger equation with inhomogeneous nonlocality and disorder. We use the variational method to show that, the shape (size) of solitons can be manipulated through adjusting the nonlocality, which, in turn, affects the soliton mobility. Direct numerical simulations reveal that the influence of disorder on the soliton transport accords with our analysis by the variational method. Besides, we have demonstrated an anisotropic transport of the 2D nonautonomous solitons as well. Our study is expected to shed light on modulating solitons through material properties for specifying their transport in disordered media.     

线性聚焦和线性散焦效应对空间光孤子间相互作用的影响

考虑非均匀一维自聚焦介质的横向不均匀性,利用非线性薛定谔方程满足的守恒律给出了相邻空间孤子间隔的解析式,并对空间孤子之间的相互作用进行了数值模拟.结果表明,线形聚焦效应增强了空间孤子之间的相互作用;而线形散焦效应减弱了空间孤子之间的相互作用.当不考虑介质横向不均匀时,空间孤子之间发生周期性的碰撞.线性散焦效应使相邻空间孤子之间的间隔随传输距离发生周期性的变化,但孤子之间并不发生碰撞.线性聚焦效应使相邻空间孤子随传输距离发生周期性的碰撞,线性聚焦效应具有压制损耗使相邻空间孤子间隔变大的作用.     

Nonlinear dynamics of DNA systems with inhomogeneity effects

We investigate the nonlinear dynamics of the Peyrard–Bishop DNA model taking into account site dependent inhomogeneities. By means of the multiple-scale expansion in the semi-discrete approximation, the dynamics is governed by the perturbed nonlinear Schrödinger equation. We carry out a multiple-scale soliton perturbation analysis to find the effects of the variety of nonlinear inhomogeneities on the breatherlike soliton solution. During the crossing of the inhomogeneities, the coherent structure of the soliton is found stable. The global shape of the inhomogeneous molecule is merged with the shape of the homogeneous molecule. However, the velocity, the wavenumber and the angular frequency undergo a time-dependent correction that is proportional to initial width of the soliton and depends on the nature of the inhomogeneities.     

Lie symmetries and solitons in nonlinear systems with spatially inhomogeneous nonlinearities

Using Lie group theory and canonical transformations, we construct explicit solutions of nonlinear Schr?dinger equations with spatially inhomogeneous nonlinearities. We present the general theory, use it to show that localized nonlinearities can support bound states with an arbitrary number solitons, and discuss other applications of interest to the field of nonlinear matter waves.     

Dynamics of twist point defects with stretching in a polymer crystal

A molecular-dynamics simulation of the behavior of a twist point defect with stretching in a chain of an equilibrium polymer crystal (“united” atoms approximation for polyethylene) is performed for immobile and mobile neighboring chains. It is shown that such a defect in a cold polymer crystal possesses soliton-type mobility. The upper limit of the spectrum of soliton velocities is found, and it is the same for both cases. The maximum possible velocity of defects is three times lower than the theoretical limit of the spectrum (which is equal to the velocity of “ torsional” sound in an isolated chain). An explanation of the reason for this discrepancy is proposed: because of the interaction of two “degrees of freedom” of the defect (twisting and stretching) the energy of a nonlinear wave is dissipated in the linear modes of the system, which results in effective friction whose magnitude depends strongly on the velocity of the defect. The “boundary of the spectrum of soliton velocities” determines the transition between regimes of strong and weak braking of defects.     

Control of interaction between femtosecond dark solitons in inhomogeneous optical fibers

In this paper, we present exact femtosecond one- and two-dark soliton solutions for a variable-coefficient higher-order nonlinear Schrödinger equation via modified Hirota method. The propagation and interaction of femtosecond dark solitons are investigated in inhomogeneous fiber systems. Elastic collision, bound oscillation and parallel propagation can be achieved in both Gaussian distributed parameter system and exponentially periodic distributed parameter system by choosing the appropriate distributed parameters and soliton parameters. The results may be beneficial to the realization of interaction control of femtosecond dark solitons in communication systems.     

Dynamics of generalized sine-Gordon soliton in inhomogeneous media

In this paper we introduce a few novel generalized sine-Gordon equations and study the dynamics of its solitons in inhomogeneous media. We consider length, mass, gravitational acceleration and spring stiffness of a coupled pendulums chain as a function of position x. Then in the continuum limit we derive semi-analytical and numerical soliton solutions of the modified sine-Gordon equation in the inhomogeneous media. The obtained results confirm that the behavior of solitons in these media is similar to that of a classical point particle moved in an external potential.     

Parabolic equation for nonlinear acoustic wave propagation in inhomogeneous moving media

A new parabolic equation is derived to describe the propagation of nonlinear sound waves in inhomogeneous moving media. The equation accounts for diffraction, nonlinearity, absorption, scalar inhomogeneities (density and sound speed), and vectorial inhomogeneities (flow). A numerical algorithm employed earlier to solve the KZK equation is adapted to this more general case. A two-dimensional version of the algorithm is used to investigate the propagation of nonlinear periodic waves in media with random inhomogeneities. For the case of scalar inhomogeneities, including the case of a flow parallel to the wave propagation direction, a complex acoustic field structure with multiple caustics is obtained. Inclusion of the transverse component of vectorial random inhomogeneities has little effect on the acoustic field. However, when a uniform transverse flow is present, the field structure is shifted without changing its morphology. The impact of nonlinearity is twofold: it produces strong shock waves in focal regions, while, outside the caustics, it produces higher harmonics without any shocks. When the intensity is averaged across the beam propagating through a random medium, it evolves similarly to the intensity of a plane nonlinear wave, indicating that the transverse redistribution of acoustic energy gives no considerable contribution to nonlinear absorption. Published in Russian in Akusticheskiĭ Zhurnal, 2006, Vol. 52, No. 6, pp. 725–735. This article was translated by the authors.     

Classical chaos and nonlinear dynamics of rays in inhomogeneous media

An investigation is made of the classical nonlinear resonance and the classical stochastic dynamics of rays in waveguide media with irregular inhomogeneities. Analytic and numerical methods are used to study the characteristics of the ray trajectories, their confinement in a nonlinear resonance, and the development of chaotic behavior in waveguides with longitudinal periodic inhomogeneities. It is established that the localization of the rays has fractal properties; in particular, the cycle length of a ray and the time and velocity of propagation of a signal depend on the initial parameters of the ray in the form of a "devil's staircase." A waveguide with an inhomogeneous index of refraction and a periodically corrugated wall is considered.     

Lateral phase drift of the topological charge density in stochastic optical fields

The statistical distributions of optical vortices or topological charge in stochastic optical fields can be inhomogeneous in both transverse directions. Such two-dimensional inhomogeneous vortex or topological charge distributions evolve in a complex way during free-space propagation. While the evolution of one-dimensional topological charge densities can be described by a linear diffusion process, the evolution of two-dimensional topological charge densities exhibits some additional nonlinear dynamics. Here we propose a phase drift mechanism as a partial explanation for this additional nonlinear dynamics. Numerical results are presented in support of this proposal.