Computational modeling of poly(alkylthiophene) conductive polymer insertion into phospholipid bilayers

We have previously demonstrated that some poly(alkylthiophenes) (PATs) are able to increase the electrical conductance of unsupported phospholipid bilayers and have hypothesized that this effect is due to the ability of some PAT side chains to permit stable insertion into the bilayer. We have further proposed the development of long-term intracellular electrodes based on that phenomenon. In this article, we apply molecular dynamics techniques to study the insertion of two model PATs into a patch of a lipid bilayer. Steered molecular dynamics is used to obtain potential trajectories of insertion, followed by umbrella sampling to determine the free-energy change upon insertion. Our results indicate that both branched-side-chain poly(3-(2-ethylhexyl)thiophene) (EHPT) and straight-side-chain poly(3-hexylthiophene) (HPT) are able to enter the bilayer but only EHPT can cross the center of the membrane and establish an electrical bridge. HPT penetrates the head groups but is not able to enter the alkyl tail phase. These findings support the feasibility of our electrode concept and raise questions regarding the mechanisms by which branched side chains grant PATs greater solubility in a lipid bilayer environment. The parameters and methods used in this study establish a novel framework for studying these and similar systems, and the results hold promise for the use of EHPT in biosensing and neural interfacing.     

Helical Folding Competing with Unfolded Aggregation in Phenylene Ethynylene Foldamers

The folding and aggregation behavior of a pair of oligo(phenylene ethynylene) (OPE) foldamers are investigated by means of UV/Vis absorption and circular dichroism spectroscopy. With identical OPE backbones, two foldamers, 1 with alkyl side groups and 2 with triethylene glycol side chains, manifest similar helical conformations in solutions in n‐hexane and methanol, respectively. However, disparate and competing folding and aggregation processes are observed in alternative solvents. In cyclohexane, oligomer 1 initially adopts the helical conformation, but the self‐aggregation of unfolded chains, as a minor component, gradually drives the folding–unfolding transition eventually to the unfolded aggregate state completely. In contrast, in aqueous solution (CH₃OH/H₂O) both folded and unfolded oligomer 2 appear to undergo self‐association; aggregates of the folded chains are thermodynamically more stable. In solutions with a high H₂O content, self‐aggregation among unfolded oligomers is kinetically favored; these oligomers very slowly transform into aggregates of helical structures with greater thermodynamic stability. The folded–unfolded conformational switch thus takes place with the free (nonaggregated) molecules, and the very slow folding transition is due to the low concentration of molecularly dispersed oligomers.     

ORDERED STRUCTURAL EVOLUTION AND RELAXATION BEHAVIORS OF A SERIES MICROPHASE SEPARATED “HAIRY-ROD” POLYIMIDES WITH MULTIPLE ALKYL SIDE CHAINS

A series of “hairy-rod” polyimides, BBPA(n), with multiple alkyl side chains was prepared from 3,3′,4,4′-biphenyltetracarboxylic dianhydride (BPDA) and 4,4′-biphenyldiamine substituted in the 2,2′-positions with benzoate, which was substituted in the 3,4,5-positions with ether side chains of varying lengths. The number of the methylene units, n, in these alkyl side chains were in even numbers ranging from 8 to 18. Combining techniques of one-dimensional (1D) and 2D wide angle x-ray diffraction, 1D small angle X-ray scattering, differential scanning calorimetry experiments, it was found that this series of “hairy-rod” polyimides possess a micro-phase separation between the backbones and side chains. This led to the formation of ordered structures in two different length scales, of which both are hexagonal packing: one is attributed to the alkyl side chains on the sub-nanometer scale, and another is for the whole polymer chains on the nanometer scale. The development of the hexagonal structure on the sub-nanometer scale was critically dependent upon the lengths of the alkylside chains. Three relaxation processes were captured by dynamic mechanical analysis, i.e., segmental motion of the backbones, α the melting of the side chain crystals, β1, which exits only for the materials with longer side chains(n=18,16); and the subglass relaxation of side chains, β2- The peak relaxation temperature of the α process decreased with increasing the length of side chains, while the one of the β2 process increased. The activation energy of the α relaxation was relatively independent on the length of side chain, whereas, β2 process showed the increasing of activation energy with increasing the length of side chains.     

梳状高分子烷基侧链构象和堆积结构的红外光谱研究

以正十九烷和两种接枝烷基链的梳状高分子N-十八烷基聚乙烯亚胺(PEI18C)、N-十八烷基聚对苯甲酰胺(PBA18C)为研究对象,利用红外光谱对处于受限和自由状态的烷基链的构象和堆积结构随温度的变化进行了对比研究.结果表明,处于受限和自由状态的烷基链的构象排列和堆积结构及其转变行为不同,且受限于柔性PEI主链和刚性PBA主链的烷基链也不相同.从主链刚性的角度,探讨了影响烷基侧链构象和堆积结构的原因.     

具有不同柱状结构的苯并菲盘状液晶化合物的合成及自组装

合成了3种含有不同长度烷基链的苯并菲盘状液晶化合物; 通过1H NMR 和 MALDI-TOF MS对其结构进行了表征; 利用差示扫描量热法(DSC)、热台偏光显微镜(POM)和小角X射线散射实验(SAXS)对3种液晶化合物的自组装行为进行了研究. 结果表明, 烷基链的长度对苯并菲盘状液晶化合物自组装结构的影响显著. 柔性链为辛基的苯并菲盘状液晶化合物自组装成六方柱状液晶相; 柔性链为十二烷基的化合物自组装成倾斜柱状液晶相; 而柔性链为十六烷基的化合物则未形成液晶相.     

Influence of the bulkiness of the substituent on the aggregation and magnetic properties of poly(3‐alkylthiophene)s

A series of poly(3‐alkylthiophene)s (P3ATs) ( P1–P5 ) has been synthesized via a Ni(dppp)‐mediated polymerization, varying the bulkiness of the alkyl side chains in order to investigate the influence of the bulkiness of the alkyl substituent on the aggregation and magnetic properties of P3ATs. UV–Vis spectroscopy, performed in solution as well as in film, shows that the stacking of the polymers becomes more complicated as the bulkiness of the side chains increases. Both the π‐interactions and the planarization of the polymer chains are diminished. While aggregation is absent in poor solvent for the polymer with the most bulky side chains, aggregation was present in film, albeit slowed down. This behavior was also confirmed by X‐ray diffraction (XRD) and differential scanning calorimetry (DSC) experiments. Electron spin resonance (ESR) measurements, performed at 300 K on powders, confirmed the trend of decreasing supramolecular order with increasing bulkiness of the side‐chain. Magnetization measurements, performed at 5 and 300 K, are in line with our hypothesis on the influence of π‐interactions and the fraction of planar polymer chains on the coercivity and saturation magnetization, respectively. © 2013 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2014 , 52, 76–86     

Effect of the Side‐Chain‐Distribution Density on the Single‐Conjugated‐Polymer‐Chain Conformation

The spatial arrangement of the side chains of conjugated polymer backbones has critical effects on the morphology and electronic and photophysical properties of the corresponding bulk films. The effect of the side‐chain‐distribution density on the conformation at the isolated single‐polymer‐chain level was investigated with regiorandom (rra‐) poly(3‐hexylthiophene) (P3HT) and poly(3‐hexyl‐2,5‐thienylene vinylene) (P3HTV). Although pure P3HTV films are known to have low fluorescence quantum efficiencies, we observed a considerable increase in fluorescence intensity by dispersing P3HTV in poly(methyl methacrylate) (PMMA), which enabled a single‐molecule spectroscopy investigation. With single‐molecule fluorescence excitation polarization spectroscopy, we found that rra‐P3HTV single molecules form highly ordered conformations. In contrast, rra‐P3HT single molecules, display a wide variety of different conformations from isotropic to highly ordered, were observed. The experimental results are supported by extensive molecular dynamics simulations, which reveal that the reduced side‐chain‐distribution density, that is, the spaced‐out side‐chain substitution pattern, in rra‐P3HTV favors more ordered conformations compared to rra‐P3HT. Our results demonstrate that the distribution of side chains strongly affects the polymer‐chain conformation, even at the single‐molecule level, an aspect that has important implications when interpreting the macroscopic interchain packing structure exhibited by bulk polymer films.     

Interplay between H‐Bonding and Alkyl‐Chain Ordering in Self‐Assembly of Monodendritic L‐Alanine Derivatives

This paper reports on the synthesis and self‐organizing properties of monodendrons consisting of L ‐alanine at the focal point and alkyl chains with different length at the periphery. The structures of thin films and monolayers are studied by temperature‐resolved grazing‐incidence X‐ray diffraction and scanning force microscopy. The interplay between H‐bonding and ordering of the alkyl chains results in a rich temperature‐dependent phase behavior. The monodendrons form H‐bonded stabilized clusters with the number of molecules depending on the length of the aliphatic chains and temperature. The clusters play the role of constitutive units in the subsequent self‐assembly. Short alkyl chains allow the material to form thermodynamically stable crystalline phases. The molecules with longer side groups exhibit additional transitions from the crystalline phase to thermotropic columnar hexagonal or columnar rectangular liquid‐crystalline phases. In monolayers deposited on highly ordered pyrolytic graphite, the materials show ordering similar to thin films. However, for the compound bearing hexadecyl chains the affinity of the alkyl groups to graphite dominates the self‐assembly and thereby allows epitaxial growth of a 2D lattice with flat‐on oriented molecules.     

Domains of colloidal size, mediated by self-assembly of small molecules in a polymer matrix: a three-level hierarchy of assembly

Studies on self-assembly of molecules, mediated by, e.g., hydrogen bonding interactions, are a major theme currently. The consequence of such self-assembly of hydrogen-bonding molecules, when dispersed in a polymer matrix, has not been studied so far. We describe such a polymer dispersed self-assembling small molecule system, in which a homologous series of small molecules, with a hydrogen-bonding moiety and alkyl side chains, is dispersed in polycarbonate. These are not liquid crystalline. The self-assembling molecules form colloidal size domains in the polymer, and this involves a hierarchy of three levels of assembly. The molecules self-assemble into small crystallites, which then organize into spherulitic structures. These spherulites then aggregate to form large, uniform near-spherical domains. The size and uniformity of the domains depend on the length of the alkyl side chain. The domain formation is reversible; that is, these domains can be melted and reformed.     

Pronounced Dependence of All-Polymer Solar Cells Photovoltaic Performance on the Alkyl Substituent Patterns in Large Bandgap Polymer Donors

For all-polymer solar cells which are composed of polymer donors and polymer acceptors, the effect of alkyl side chains on photovoltaic performance is a matter of some debate, and this effect remains difficult to forecast. In this concise contribution, we demonstrate that three alkyls namely branched alkyl 2-butyloctyl (2BO), long linear alkyl n-dodecyl (C12), and double-short linear alkyl n-hexyls (DC6) incorporated into the side chains of large bandgap polymer donor PBDT-TTz can induce considerable, of significance, and different electronic, optical, and morphological parameters. Systematic studies shed light on the critical role of the double-short linear alkyl n-hexyls (DC6) in (i) producing large ionization potential value, (ii) increasing propensity of the polymer to order along the π-stacking direction, (iii) generating polymer crystallites with more preferential “face-on” orientation, consequently, (iv) improvement of carriers transportation, (v) suppression of charge recombination, (vi) reduction of energy loss in all-polymer devices. In parallel, we unearth that the PBDT-TTz with double-short linear alkyl n-hexyls (DC6) represents the highest efficiency of 8.3 %, whereas, the other two PBDT-TTz analogues (2BO, C12) yield efficiencies of less than 3 % in optimized all-polymer solar cells. Though branched or long linear alkyl side chains (2BO, C12) have been applied to provide the solution processability of conjugated polymers, motifs bearing multiple short linear alkyl substituents (DC6) are proved critical to the development of high performing polymers.     

倒浮萍聚合物ES-3LB膜掠角反射-吸收红外光谱的研究

用傅里叶变换红外掠角反射-吸收光谱技术对ES-3LB膜的取向和相变行为进行了详细的研究.结果表明,在金表面上制备的ES-3LB膜中烷基链基本垂直于基面.相转变行为的研究表明,ES-3LB膜有3个相变点,分别在65,105和140℃.第一个相变过程表现为LB膜从一种有序状态到另一种有序状态的转变;第二个相变过程表现为LB膜中烷基链的有序-无序转变;第三个相变过程是LB膜的层状结构坍塌转变为各向同性熔融体的过程.     

Shape‐Persistent Two‐Component 2 D Networks with Atomic‐Size Tunability

Over the past few years, two‐dimensional (2D) nanoporous networks have attracted great interest as templates for the precise localization and confinement of guest building blocks, such as functional molecules or clusters on the solid surfaces. Herein, a series of two‐component molecular networks with a 3‐fold symmetry are constructed on graphite using a truxenone derivative and trimesic acid homologues with carboxylic‐acid‐terminated alkyl chains. The hydrogen‐bonding partner‐recognition‐induced 2D crystallization of alkyl chains makes the flexible alkyl chains act as rigid spacers in the networks to continuously tune the pore size with an accuracy of one carbon atom per step. The two‐component networks were found to accommodate and regulate the distribution and aggregation of guest molecules, such as COR and CuPc. This procedure provides a new pathway for the design and fabrication of molecular nanostructures on solid surfaces.     

Morphological studies of blends of conjugated polymers and acceptor molecules using langevin dynamics simulations

We use coarse‐grained Langevin dynamics simulations of blends of generic conjugated polymers and acceptor molecules to show how architecture (e.g., side chains, backbone flexibility of oligomers) and the pair‐wise interactions between the constituents of the blend affect morphology and phase transition. Alkyl side chains on the conjugated oligomer backbones shift the liquid crystal (LC) transition temperature from that of bare conjugated backbones and the direction of the shift depends on backbone–backbone interactions. Rigid backbones and constrained side chains cause a layer‐by‐layer morphology of conjugated polymers and amorphous acceptors, whereas flexible backbones and unconstrained side chains facilitate highly ordered acceptor arrangement. Strong backbone–backbone attraction shifts LC transition to higher temperatures than weak backbone–backbone attraction, and strong acceptor–acceptor attraction increases acceptor aggregation. Pure macro‐phase separated domains form when all pair‐wise interactions in the blend are strongly attractive, whereas interconnected domains form at intermediate acceptor–acceptor attraction and strong polymer–polymer attractions. © 2012 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys, 2013     

Novel diphenylacetylene-based room-temperature liquid crystalline molecules with alkylthio groups,and investigation of the role for terminal alkyl chains in mesogenic incidence and tendency

In this study, we offer a new family of alkylthio-containing diphenylacetylene-based liquid crystalline molecules (the so-called tolanes) showing nematic phases stable down to room temperature and high birefringence, with insights into the role for terminal alkyl chains in mesogenic incidence and tendency. A number of asymmetric tolane homologues having various alkyl chain lengths in the alkylthio and alkyl groups at each p-, p’-position were synthesised, and their phase transition behaviour was investigated by polarising optical microscope observation, differential scanning calorimetry and wide-angle X-ray diffraction measurement. Consequently, several homologues exhibited monotropic nematic or highly ordered smectic (soft crystal) phases stable down to room temperature. It is found that a long alkyl group on the side opposite to an alkylthio group is prerequisite for mesogenic incidence. In addition, a nematogenic homologue exhibited a higher birefringence value of 0.20 compared to that of 0.19 for an alkoxy counterpart.     

Supramolecular staircase via self-assembly of disklike molecules at the solid-liquid interface.

A series of soluble hexabenzocoronene (HBC) derivatives with pendant optically active (S)-3,7-dimethyloctanyl and (R,S)-3,7-dimethyloctanyl (mixture of stereoisomers) hydrocarbon side chains with and without a phenylene spacer were assembled into differently ordered arrays at the interface between a solution and the basal plane of highly oriented pyrolytic graphite (HOPG). Molecularly resolved scanning tunneling microscopy (STM) images revealed that all derivatives self-assemble into oriented crystals in quasi-two dimensions. However, while for the alkyl-substituted HBCs (1,4) all of the single aromatic cores within a monolayer exhibit the same contrast in the STM, the single aromatic cores with a phenylene group between the alkyl side chains and the aromatic core (2a,2b,3) exhibit different contrasts within a monolayer. For the disks carrying racemic branched or n-alkyl side chains (2b,3) a random distribution of the two different contrasts within the 2D-crystal is observed, while the optically active phenylene-alkyl-substituted HBC (2a) exhibits a periodical distribution of three contrasts within the monolayer. We attribute the different contrasts of the aromatic cores in the presence of the phenylene groups to a loss of the planarity of the whole molecule and different conformations, which allow the conjugated disks to attain different equilibrium positions above the surface of HOPG. In the case of the optically active side chains a regular superstructure with three distinctly different positions such as in a staircase is attained. The self-assembly processes are governed by the interplay of intramolecular as well as intermolecular and interfacial interactions. In the present case, the interactions may induce both the molecules to acquire well distinct positions along the z axis and to adopt different conformations. The reported results open new avenues of exploration. For instance, the different couplings of conjugated molecules with the substrate at different separations can be investigated by means of scanning tunneling spectroscopy (STS). Furthermore, experiments on the STM tip-induced switching of single molecules embedded in a monolayer appear feasible.     

Role of each part of cyanobiphenyl-containing polymers in porous-film preparation by using the breath-figure method

ABSTRACT

The breath-figure method using the condensation of water droplets can easily fabricate regular porous films. Although the method is simple, the phenomenon itself requires the control of many parameters that change throughout the process. Therefore, we require a unified understanding of polymers for the fabrication of ordered porous films. In this study, to clarify the required molecular structures of polymers to form a regular porous structure, we systematically explored poly(methacrylate)s with cyanobiphenyl moieties connected by dodecyl groups in the side chain (P11CB); these could form a hexagonal ordered porous structure on the entire film surface. The comparison of P11CB and P11B, which is a P11CB without cyano groups, showed that the local polar groups in hydrophobic polymers promote the formation of ordered porous films. Furthermore, no holes were formed in films of P0CB which is a P11CB without alkyl spacers due to its hydrophilicity. Long alkyl chains resulted in changed hydrophilic polymers to hydrophobic polymers. The introduction of long alkyl chains as a spacer between the biphenyl moiety and polymer backbone is preferred in the cases of particularly few amounts of biphenyl groups in the polymer. The biphenyl groups showed the ability to improve film formability.     

Side chain engineering and conjugation enhancement of benzodithiophene and phenanthrenequnioxaline based conjugated polymers for photovoltaic devices

A series of donor‐acceptor conjugated polymers incorporating benzodithiophene (BDT) as donor unit and phenanthrenequnioxaline as acceptor unit with different side chains have been designed and synthesized. For polymer P1 featuring the BDT unit and alkoxy chains substituted phenanthrenequnioxaline unit in the backbone, serious steric hindrance resulted in quite low molecular weight. The implementation of thiophene ring spacer in polymer P2 greatly suppressed the interannular twisting to extend the effective conjugation length and consequently gave rise to improved absorption property and device performance. In addition, utilizing the alkylthienyl side chains to replace the alkyl side chains at BDT unit in polymer P3 further enhanced the photovoltaic performance due to the increased conjugation length. For polymer P4, translating the alkoxy side chains at the phenanthrenequnioxaline ring into the alkyl side chains at thiophene linker group enhanced molecular planarity and strengthened π?π stacking. Consequently improved absorption property and increased hole mobility were achieved for polymer P4. Our results indicated that side chain engineering not only can influence the solubility of polymer but also can determine the polymer backbone planarity and hence the photovoltaic properties. © 2015 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2015 , 53, 1915–1926     

Supramolecular organization in the solid state of a novel soluble polydiacetylene

The synthesis of the monomer 1,6-bis(3,6-dihexadecyl-N-carbazolyl)-2,4-hexadiyne, its polymerization and the purification of the polymer, which is soluble in common organic solvents, are reported. Results from powder X-ray diffraction studies carried out on the red form of the polymer are discussed. The red polymer chains self-assemble into cylindrical shapes which produce hexagonal columnar mesophases with a transition from a more (Colho) to a less ordered (Colhd) structure around 85 C. The role played by the long alkyl chains in the formation of the supramolecular hexagonal mesophase is emphasized by comparing these results with those obtained from an analogous polymer with dodecyl substituents which exhibits only the Colhd structure over the whole range of temperature explored.     

Control of anchoring of nematic fluids at polymer surfaces created by in situ photopolymerization

In situ photopolymerization of alkyl acrylate monomers in the presence of a nematic fluid provides a cellular matrix of liquid crystalline droplets in which the chemical structure of the encapsulating polymer exerts control over the alignment (anchoring) of the liquid crystalline molecules. Control is obtained by variation of the alkyl side chains and through copolymerization of two dissimilar monofunctional acrylates. For example, among a series of poly(methylheptyl acrylate)s, the 1-methylheptyl analogue prefers planar anchoring of a nematic (TL205) over the temperature range studied. However, the polymers of other methylheptyl side chains display a homeotropic-to-planar anchoring thermal transition temperature similar to that of the n-heptyl analogue. Copolymerization of two monofunctional acrylates with opposing tendencies of aligning liquid crystal leads to tunability of anchoring behavior over a wide temperature range. The broad anchoring transitions we observed provide a way of achieving highly tilted anchoring.     

Structural Engineering of Luminogens with High Emission Efficiency Both in Solution and in the Solid State

Developing molecules with high emission efficiency both in solution and the solid state is still a great challenge, since most organic luminogens are either aggregation‐caused quenching or aggregation‐induced emission molecules. This dilemma was overcome by integrating planar and distorted structures with long alkyl side chains to achieve DAπAD type emitters. A linear diphenyl–diacetylene core and the charge transfer effect ensure considerable planarity of these molecules in the excited state, allowing strong emission in dilute solution (quantum yield up to 98.2 %). On the other hand, intermolecular interactions of two distorted cyanostilbene units restrict molecular vibration and rotation, and long alkyl chains reduce the quenching effect of the π–π stacking to the excimer, eventually leading to strong emission in the solid state (quantum yield up to 60.7 %).