FTIR and Ab Initio Studies of Diisopropylsulfoxide and its Solutions

Fourier transform infrared (FTIR) measurements, ab initio quantum chemical calculations at the restricted Hartree–Fock (RHF) level and density functional theory (DFT) calculations have been performed to study molecular interactions in pure diisopropylsulfoxide (DiPSO) and the binary mixtures DiPSO/CCl₄ and DiPSO/water. The optimized molecular geometry, vibrational wavenumbers, dipole moments and several thermodynamic parameters of free DiPSO and DiPSO/water 1:1 complex in the ground state were calculated using the RHF and B3LYP methods with the 6-31G(d) basis set. A fitting procedure has been performed for both SO and CH stretching regions and a detailed spectral interpretation has been done based on the data obtained from ab initio calculations, infrared spectra and band deconvolution analysis.     

DFT study of vibrational circular dichroism spectra of D-lactic acid-water complexes

This paper presents a discussion of the interaction energies, conformations, vibrational absorption (VA, harmonic and anharmonic) and vibrational circular dichroism (VCD) spectra for conformers of monomeric chiral d(-)-lactic acid and their complexes with water at the DFT(B3LYP)/aug-cc-pVDZ and DFT(B3LYP)/aug-cc-pVTZ levels. A detailed analysis has been performed principally for the two most stable complexes with water, differing by lactic acid conformation. The VCD spectra were found to be sensitive to conformational changes of both free and complexed molecules, and to be especially useful for discriminating between different chiral forms of intermolecular hydrogen bonding complexes. In particular, we show that the VCD modes of an achiral water molecule after complex formation acquire significant rotational strengths whose signs change in line with the geometry of the complex. Using the theoretical prediction, we demonstrate that the VCD technique can be used as a powerful tool for structural investigation of intermolecular interactions of chiral molecules and can yield information complementary to data obtained through other molecular spectroscopy methods.     

Molecular structure,vibrational spectra and nonlinear optical properties of orthoarsenic acid–tris-(hydroxymethyl)-aminomethane DFT study

In this work, we report a theoretical study on molecular structure, vibrational spectra and nonlinear optical properties of orthoarsenic acid–tris-(hydroxymethyl)-aminomethane (OATA). The theoretical geometrical parameters in the ground state have been investigated by density functional method (B3LYP and BLYP) with 6-311G(d,p) basis set. The influence of intermolecular interactions effects on molecular properties has been considered by calculation performed on (OATA) dimer. The optimized geometric bond lengths and bond angles are in well agreement with the experimental data. As compared to theoretical frequencies of the monomer, the calculated values obtained for (OATA) dimer are in much better agreement with the experiment. All experimental vibrational bands have been discussed and assigned to normal modes on the basis of our theoretical calculations. B3LYP method has shown better fit to experimental ones than BLYP in calculation vibrational frequencies. To investigate nonlinear optical behaviour, the electric dipole moment μ, the polarizability α and the hyperpolarizability β were computed using DFT//B3LYP/6-311G(d,p) method.     

Determination of the solution structures of melamine-based bis- and tris-macrocyclic ligand copper(II) complexes

A combination of molecular mechanics (MM), electron paramagnetic resonance spectroscopy (EPR), and spectra simulation (MM-EPR) has been used to determine the solution structures of di- and trinuclear copper(II) complexes of melamine-based oligomacrocyclic ligands. The spin Hamiltonian parameters of the mononuclear, melamine-appended macrocyclic ligand copper(II) complex have been determined by EPR spectroscopy and were also studied with DFT methods. These spin Hamiltonian parameters, together with the structural parameters obtained from models optimized with MM, have been used for the simulation of the EPR spectra of the di- and trinuclear complexes. For the dinuclear complex, the syn isomer is preferred over the anti, for which an X-ray structure exists; for the trinuclear complex, the syn,syn isomer is preferred over the syn,anti form. Additional support for these assignments comes from DFT calculations, and this demonstrates that the MM-DFT-EPR method is a reliable approach for the determination of solution structures and for the analysis of spin Hamiltonian parameters of dipolar, coupled transition metal complexes (g and A tensors and J values).     

Vibrational spectroscopic study on the quantum chemical model and the X-ray structure of gallic acid,solvent effect on the structure and spectra

Infrared, Raman and far-IR spectra of gallic acid were recorded both in crystalline and in its dry form. Solvent effect of water was studied. The molecular and crystal structures were determined by single crystal X-ray diffraction. A complex system of intermolecular interactions was revealed. Optimized geometries, vibrational frequencies and infrared intensities were calculated utilizing the post-HF DFT method with the Becke3LYP functional and the 6-31G* basis set. Normal coordinate analysis was carried out. The results of the calculations were applied to simulate the infrared and Raman spectra and the full assignment of the acquired spectra is presented.     

Vibrational spectra and reinvestigation of the crystal structure of a polymeric copper(II)-orotate complex, [Cu(μ-HOr)(H2O)2]n: The performance of new DFT methods, M06 and M05-2X, in theoretical studies

The crystal and molecular structure of a polymeric Cu(II)-orotate complex, [Cu(μ-HOr)(H₂O)₂]_n, has been reinvestigated by single crystal X-ray diffraction. It is shown that several synergistic interactions: two axial Cu-O interactions; intramolecular and intermolecular hydrogen bonds; and π-π stacking between the uracil rings contribute to the stability of the crystal structure. The Raman and FT-IR spectra of the title complex are reported for the first time. Comprehensive theoretical studies have been performed by using three unrestricted DFT methods: B3LYP; and the recently developed M06, and M05-2X density functionals. Clear-cut assignments of all the bands in the vibrational spectra have been made on the basis of the calculated potential energy distribution, PED. The very strong Raman band at 1219 cm⁻¹ is diagnostic for the N1-deprotonation of the uracil ring and formation of the copper-nitrogen bond, in this complex. The Cu-O (carboxylate) stretching vibration is observed at 287 cm⁻¹ in the IR spectrum, while the Cu-N (U ring) stretching vibration is assigned to the strong Raman band at 263 cm⁻¹. The molecular structure and vibrational spectra (frequencies and intensities) calculated by the M06 functional method are very similar to the results obtained by the B3LYP method, but M06 performs better than B3LYP in calculations of the geometrical parameters and vibrational frequencies of the interligand O-H?O hydrogen bonding. Unfortunately, the M05-2X method seriously overestimates the strength of interligand hydrogen bond.     

Polysulfone Membranes via Thermally Induced Phase Separation

Polysulfone (PSF) membranes have gained great attention in the fields of ultrafiltration,microfiltration,and thin film composite membranes for nanofiltration or reverse osmosis.For the first time,it is proposed to fabricate PSF membranes via thermally induced phase separation (TIPS) process using diphenyl sulfone (DPSO2) and polyethylene glycol (PEG) as mixed diluent.DPSO2 is chosen as a crystallizable diluent,while PEG is considered in terms of molecular weight (Mw) and dosage.We systematically investigate the interactions between PSF,DPSO2 and PEG based on the simulation calculations and solubility parameter theory.It is inferred that DPSO2 has an excellent compatibility with PSF,and the addition of PEG results in the ternary system thermodynamically less stable and then facilitates its liquid-liquid (L-L) phase separation.SEM images indicate that cellular-like pores are obvious throughout the membrane when the PEG content in the mixed diluent is 25 wt％-35 wt％.We can facilely manipulate the pore size,water flux and mechanical properties of PSF membranes with the dosage of PEG-200,the Mw of PEG or the cooling rate.The successful application of TIPS can provide a new approach for structure manipulation and performance enhancement of PSF membranes.     

Ab-initio and DFT Calculations of PdCl2L2 （L = DHSO, DPSO） Complexes

1INTRODUCTION Sulfoxides have been widely used in the separa-tion of palladium from other platinum-group metals by solvent extraction[1～3].They usually form extrac-tant-Pd(II)complexes PdCl2(R2SO)2in the extrac-tion process.It is well known that dialkyl sulfoxides have better affinity towards Pd(II)than those aromatic sulfoxides[4,5].So far,this phenomenon is poorly understood theoretically.Various calcula-tions have been performed in geometry optimiza-tions,NMR and S=O bond disso…     

A mixed experimental and theoretical study on chelidamate copper(II) complex with 4-methylpyrimidine

A new chelidamate complex, [Cu(chel)(H₂O)₂(mpd)] (chel = chelidamate; mpd = 4-methylpyrimidine), has been synthesized and characterized through a combination of single crystal X-ray analysis, electron paramagnetic resonance (EPR), ultraviolet-visible (UV-vis), and fourier transform infrared spectroscopy (FT-IR). The complex has six-coordinate distorted octahedral geometry around Cu(II). The theoretical vibrational frequencies and optimized geometric parameters (bond lengths and angles) have been calculated using Density Functional Theory (DFT)/B3LYP and Hartree Fock quantum chemical methods with 6-31G(d, p) basis set by Gaussian 09W software. The EPR spectrum of the compound showed that the paramagnetic center has rhombic symmetry. The EPR studies were carried out using the following unrestricted hybrid density functionals: B3LYP, CAM-B3LYP, HSEH1PBE, WB97XD, MPW1PW91, and BPV86. The UV–vis absorption spectra have been examined in different media and compared with the calculated one using TD-DFT method by applying the polarizable continuum model. Natural bond orbital property of complex has been performed by DFT/B3LYP with 6-31G (d, p) basis set.     

Experimental and theoretical study of the hydration of phosphate groups in esters of biological interest

We have studied the influence of different groups esterified to phosphates on the strength of the interaction of the PO bond with one water molecule. Experimental vibrational spectra of PO(4)3-, HPO4(2-), H2PO4-, phosphoenolpiruvate (PEP) and ortho-phosphocholamine (o-PC) were obtained by means of FTIR spectroscopy. Geometry calculations were performed using standard gradient techniques and the default convergence criteria as implemented in GAUSSIAN 98 Program. In order to assess the behaviour of such DFT theoretical calculations using B3LYP with 6-31G* and 6-311++G** basis sets, we carried out a comparative work for those compounds. The results were then used to predict the principal bands of the vibrational spectra and molecular parameters (geometrical parameters, stabilisation energies, electronic density). In this work, the relative stability and the nature of the PO bond in those compounds were systematically and quantitatively investigated by means of Natural Bond Order (NBO) analysis. The topological properties of electronic charge density are analysed employing Bader's Atoms in Molecules theory (AIM). The hydrogen bonding of phosphate groups with water is highly stable and the PO bond wavenumbers are shifted to lower experimental and calculated values (with the DFT/6-311++G** basis set). Accordingly, the predicted order of the relative stability of the hydrogen bonding of the water molecule to the PO bond of the investigated compounds is: PO(4)3->HPO4(2-)>H2PO4->phosphoenolpiruvate>phosphocholamine for the two basis sets used.     

Quantum DFT and DF–DFT study of vibrational spectra of sulfuric acid,sulfuric acid monohydrate,formic acid and its cyclic dimer

Rigorous theoretical treatment of vibrational frequencies is critically important for the interpretation of unassigned experimental vibrational spectra and accurate determination of thermodynamic properties of molecular clusters. IR spectra of trans monomers of sulfuric and acetic acids, sulfuric acid monohydrate and cyclic dimer of the formic acid have been studied using DFT and DF–DFT methods using BLYP, B3LYP and PW91 with 12 different Pople and Dunning basis sets. New data for above-mentioned structures have been reported, scaling factors have been calculated and a comprehensive analysis of the performance of BLYP, B3LYP and PW91 methods has been performed. Comparison of the obtained results with experiments shows that results of pure PW91 and BLYP are better than predictions of well-established hybrid B3LYP method. Our analysis shows on the existence of the considerable difference in scaling factors weighted to high and low frequencies. In the case of formic acid dimer, the deviation the predicted low frequencies from the experimental data is considerable that leads to quite large (∼6–7 kcal mol⁻¹) uncertainties in the absolute values of the cluster Gibbs free energy. In order to determine an efficient computational strategy that comprises accuracy and reasonable computational costs, the effect of density fitting (DF) and basis set superposition error (BSSE) on the vibration frequencies has been investigated. We found that application of the DF that substantially (2.5–3.5 times) increases the performance of pure PW91 and BLYP methods gives excellent results, which are very close to those of conventional DFT. This suggests that DF–DFT is a viable low-cost alternative to conventional DFT in predicting vibrational spectra. It has been found that while vibrational spectra obtained using the counterpoise correction (CP) for the BSSE do not deviate much from uncorrected ones, the difference in absorption intensities between corrected and uncorrected spectra obtained using small and medium-sized basis sets is considerable. This suggests that application of DF–DFT uncorrected for the BSSE with large basis sets is a more efficient strategy of predicting vibrational spectra than the application of conventional DFT with small basis sets.     

The effect of intermolecular dipole-dipole interaction on Raman spectra of polyconjugated molecules: density functional theory simulations and mathematical models

In this work, we analyze the effect of intermolecular dipole-dipole interactions on Raman spectra of polyconjugated molecules. In particular, the behavior of push-pull polyenes has been studied. By means of density functional theory (DFT) calculations on isolated molecules and dimers, we have found that both the frequencies and intensities of the strongest Raman lines (R mode) are strongly influenced by intermolecular interactions. The results have been rationalized within the effective conjugation coordinate (ECC) theory developed in the past. The calculations for different configurations have also shown that the Raman spectra are sensible to different intermolecular geometries, thus implying a possible application of vibrational spectroscopy to the study of supramolecular properties of polyconjugated systems. The comparison with the available experimental spectra confirms the results obtained with the DFT computations. Finally, a very simple mathematical model is proposed for the prediction of the Raman frequencies of interacting systems. From the knowledge of just a few quantities for the isolated molecule and of some geometrical parameters, an estimate of the frequency of the dimers can be obtained. Despite its simplicity, this model gives results in very good agreement with DFT calculations carried out explicitly on dimers in several different arrangements.     

Embedded,graph-theoretically defined many-body approximations for wavefunction-in-DFT and DFT-in-DFT: Applications to gas- and condensed-phase ab initio molecular dynamics,and potential surfaces for quantum nuclear effects

We present a graph-theoretic approach to adaptively compute many-body approximations in an efficient manner to perform (a) accurate post-Hartree–Fock (HF) ab initio molecular dynamics (AIMD) at density functional theory (DFT) cost for medium- to large-sized molecular clusters, (b) hybrid DFT electronic structure calculations for condensed-phase simulations at the cost of pure density functionals, (c) reduced-cost on-the-fly basis extrapolation for gas-phase AIMD and condensed phase studies, and (d) accurate post-HF-level potential energy surfaces at DFT cost for quantum nuclear effects. The salient features of our approach are ONIOM-like in that (a) the full system (cluster or condensed phase) calculation is performed at a lower level of theory (pure DFT for condensed phase or hybrid DFT for molecular systems), and (b) this approximation is improved through a correction term that captures all many-body interactions up to any given order within a higher level of theory (hybrid DFT for condensed phase; CCSD or MP2 for cluster), combined through graph-theoretic methods. Specifically, a region of chemical interest is coarse-grained into a set of nodes and these nodes are then connected to form edges based on a given definition of local envelope (or threshold) of interactions. The nodes and edges together define a graph, which forms the basis for developing the many-body expansion. The methods are demonstrated through (a) ab initio dynamics studies on protonated water clusters and polypeptide fragments, (b) potential energy surface calculations on one-dimensional water chains such as those found in ion channels, and (c) conformational stabilization and lattice energy studies on homogeneous and heterogeneous surfaces of water with organic adsorbates using two-dimensional periodic boundary conditions.     

Vibrational spectra of 1-methylthymine: matrix isolation, solid state and theoretical studies

The infrared spectra of 1-methylthymine (1-MeT) in argon and nitrogen cryogenic matrices are presented, for the first time. The molecular structure, conformations, vibrational frequencies, infrared intensities and Raman scattering activities of 1-MeT have been calculated by the DFT(B3LYP), MP2 and HF methods using the D95V** basis set. The theoretically predicted intensity pattern of the IR and Raman bands has proved to be of great help in assigning the experimental spectra. Rigorous normal coordinate analysis has been performed, at each level of theory. The unequivocal and complete vibrational assignment for 1-MeT has been made on the basis of the calculated potential energy distribution (PED). Comparison of the experimental matrix isolation spectra with the theoretical results has revealed that the B3LYP method is superior to both the MP2 and HF methods in predicting the frequencies of uracil derivatives. The MP2 method consistently underestimates the frequencies of the out-of-plane gamma(C=O) and gamma(C-H) bending modes, while the HF method yields the reverse order of the frequencies of two nu(C=O) stretching vibrations. Investigation of the frequency shift of several bands, on passing from matrix isolation to solid state spectra, has provided information on the strength of intermolecular hydrogen bonding in the crystal of 1-MeT. Several ambiguities in the earlier assignments of the vibrational spectra of polycrystalline 1-MeT have been clarified.     

Synthesis, spectral studies, crystal structures and TDDFT studies of the rhenium(I) complexes of 2,4-dihydroxy-N′-(4-hydroxybenzilidene) benzohydrazide

The rhenium(I) carbonyl bromide complex, [ReBr(CO)₃(HL)], of the ligand derived from 2,4-dihydroxybenzaldehyde and 4-hydroxybenzoic acid hydrazide (HL), has been prepared. HL and its complex have been characterized by elemental analysis, MS, IR, UV-Vis and ¹H NMR spectroscopic methods. The structure of HL and the aqua-complex [Re(OH₂)(CO)₃(L)] where the ligands are monodeprotonated have been elucidated by X-ray diffraction. The structure of [ReBr(CO)₃(HL)] has been calculated from conformational parameters found in the aqua-complex. DFT and TDDFT calculations have been performed to obtain the IR spectra and UV-Vis absorption and emission spectra. The calculated spectra agree with the experimental results.     

Molecular structure, vibrational spectra and NBO analysis of phenylisothiocyanate by density functional method

The molecular geometry, vibrational frequencies and NBO analysis of phenylisothiocyanate (PITC) in the ground state have been calculated by using density functional theory calculation (B3LYP) with 6-311++G(d,p) basis set. The optimized geometrical parameters obtained by DFT calculations are in good agreement with experimental values. Comparison of the observed fundamental vibrational frequencies of the PITC and calculated result by density functional theory (B3LYP) indicates B3LYP is superior for molecular vibrational problems. The entropy of the title compound was also performed at HF/B3LYP/6-311++G(d,p) levels of theory. Natural bond orbital (NBO) analysis of title molecule is also carried out. A detailed interpretation of the IR and Raman spectra of PITC is reported on the basis of the calculated potential energy distribution (PED). The theoretical spectrogram for IR spectrum of the title molecule has been constructed.     

Synthesis, FTIR, FT-Raman, UV-visible, ab initio and DFT studies on benzohydrazide

A systematic vibrational spectroscopic assignment and analysis of benzohydrazide (BH) has been carried out by using FTIR and FT-Raman spectral data. The vibrational analysis were aided by electronic structure calculations--ab initio (RHF) and hybrid density functional methods (B3LYP and B3PW91) performed with 6-31G(d,p) and 6-311++G(d,p) basis sets. Molecular equilibrium geometries, electronic energies, IR intensities, harmonic vibrational frequencies, depolarization ratios and Raman activities have been computed. Potential energy distribution (PED) and normal mode analysis have also been performed. The assignments proposed based on the experimental IR and Raman spectra have been reviewed and complete assignment of the observed spectra have been proposed. UV-visible spectrum of the compound was also recorded and the electronic properties, such as HOMO and LUMO energies and λ(max) were determined by time-dependent DFT (TD-DFT) method. The geometrical, thermodynamical parameters and absorption wavelengths were compared with the experimental data. The interactions of carbonyl and hydrazide groups on the benzene ring skeletal modes were investigated.