A novel fluorescent detection for PDGF-BB based on dsDNA-templated copper nanoparticles简

A novel method for the detection of PDGF-BB has been developed using double-strand DNA-copper nanoparticles （dsDNA-CuNPs） as fluorescent markers. This assay relies on the premise that the aptamer- based probe undergoes a conformational change upon binding with target protein, and subsequently triggers polymerization reaction to generate dsDNA. Then, the resultant dsDNA can be used as a template for the formation of CuNPs with high fluorescence. Under the optimized conditions, the proposed assay allowed sensitive and selective detection of PDGF-BB with a detection limit of 4 nmol/L. This possibly makes it an attractive platform for the detection of a variety of biomolecules whose aptamers undergo similar conformational change.     

Evidence of DNA-Ligand Binding with Different Modes Studied by Spectroscopy

The study of DNA (deoxyribonucleic acid) conformational changes upon ligand bindingis a hot spot in the frontier field of relative research in chemical biological or medicinalareas,1-5. The structual changes of DNA in response to ifferent bound ligands haveattracted continuing at'tention in the medicinal design of anticancer and/or anti-AIDSdrugs. TO fuFther reveal the relationship between the specially functional structure ofligands and the conformational changes of DNA, the binding mod…     

DNA-binding Studies of Daunorubicin in the Presence of Methylene Blue by Spectroscopy and Voltammetry Techniques

The interaction of daunorubicin with calf thymus DNA has been investigated with the use of methylene blue dye as a spectral probe by the application of UV-Vis spectrophotometry, spectrofluorometry and voltammetry. The voltammetric behavior of daunorubicin has been investigated at a glassy carbon electrode using cyclic and differential pulse voltammetry. Both UV-vis spectrophotometry and cyclic voltammetry studies confirmed the intercalation reaction. The results showed that both daunorubicin and methylene blue molecules could intercalate into the double helix of DNA. The apparent binding constant of daunorubicin with DNA has been found to be 7.8 ×104 L•mol－1. The fluorescence signal of daunorubicin and methylene blue was quenched with DNA addition. The Stern-Volmer equation was plotted based on the quenching fluorescence signal of daunorubicin.     

Design and Synthesis of a Selective Chemosensor for Zn^2＋

A hydroxyl substituted phenolic Schiff base 1, used as sensor for detection of Zn^2＋, was synthesized and investigated. It was found that a strong fluorescence emission was observed when 1 bound to Zn^2＋ in acetonitrile, whereas no fluorescence emission was detected when 1 bound to other metal ions （Fe^2＋, Co^2＋, Ni^2＋, Cu^2＋, Cd^2＋, Hg^2＋, Mg^2＋, Pb^2＋, Ca^2＋, Ba^2＋, Sr^2＋） except for Mg^2＋, for which a weak fluorescence emission was detected in the same condition. Competition experiment showed that no obvious interference was observed in its fluorescence while 1 performed the titration with Zn^2＋ in the different mixtures of metal ions. To understand the site where Zn^2＋ coordinated to the ligand and the mechanism of binding, three other hydroxyl substituted phenolic Schiff bases 2-4 were synthesized and their binding reactions with Zn^2＋were also investigated.     

Synthesis of a fluorescent probe based on naphthalimide derivative for simultaneous detecting of NO and pH in bioimagingEI北大核心CSCD

A new type of fluorescent probe Na-pHNO was synthesized for the simultaneous detection of NO and pH based on naphthalimide derivative. The probe had good fluorescence property in mixture solution of 99% phosphate buffer solution（PBS）and 1% dimethyl sulfoxide（DMSO）solution. It can produce a yellow-green emission peak at 544 nm,and the fluorescence intensity can be enhanced with the increase of NO concentration or the decrease of pH. The probe Na-pHNO displayed good selectivity,high sensitivity,and strong anti-interference towards NO,exhibiting good fluorescence reversibility at pH 5.5-8.5. The spectral studies showed that the probe Na-pHNO exhibited weak fluorescence due to a dual photoinduced electron transfer（PET）effect. After interacting with NO or pH,the dual PET inhibitory effect occurred,and the fluorescence intensity was significantly enhanced. The fluorescence imaging of probe Na-pHNO in HeLa cells showed that it could realize the visual monitoring of the changes of intracellular pH and NO concentration. The probe has been successfully applied to fluorescence imaging of Caenorhabditis elegans. © 2023, Youke Publishing Co.,Ltd. All rights reserved.     

Simultaneous Determination of Magnolol and Honokiol rby Synchronous Fluorescence Spectroscopy

A simple sensitive and quick assay for simultaneously determining magnolol （MOL） and honokiol （HOL） has been described based on their natural fluorescence. This method is based on the fact that synchronous fluorometry could resolve the overlapping of fluorescence spectra, which was aroused by their similar molecular structures. In this work, the synchronous spectrum, maintaining a constant difference of Aλ =10 nm between the emission and excitation wavelengths, has been selected for the determination of HOL and MOL. Under the optimum conditions, the fluorescence intensity is proportional to the concentration of MOL and HOL in solution over the range 0.075-0.7 μg/mL and 0.05-0.9 μg/mL with the detection limit of 0.029 μg/mL and 0.019 μg/mL, respectively. The method was applied to the simultaneous determination of MOL and HOL in pharmaceutical dosage with satisfactory results.     

Effects of Hydrogen-bonding Interaction and Polarity on Emission Spectrum of Naphthalene-Triethylamine in Mixed Solvent

The effects of the protic and aprotic polar solvents on the emission spectrum of the naphthalene-triethyl-amine system in THF were studied under conditions of steady-state illumination. The fluorescence spectrum of the naphthalene-triethylamine system consists of two emission bands, the fluorescence band of naphthalene (band A, 329 nm) and the emission band of the exciplex(band B, 468 nm). The intensities of both the emission bands decrease with increasing the solvent polarity. The intensity of band B also decreases due to the hy-drogen-bonding interaction between triethylamine and protic solvent, while that of band A increases. It is thus suggested that the quenching of naphthalene fluorescence by triethylamine in THF occurs through the charge transfer and electron transfer reactions. The spectral changes upon the increase of solvent polarity can be explained by the dependences of the equilibrium constant between exciplex and ion-pair and the rate constant for the electron transfer reaction from triethyl.amine to the excited naphthalene on the rel.ative permittivity of solvent. It is shown that the formation of intermolecular hydrogen-bonding between triethylamine and protic solvent suppresses the quenching reaction by the decrease in free amine. Acetonitrile has only a polar effect and trichloroacetic acid only a hydrogen-bonding(or protonation) effect, while alcohols have both the effects. The effects of alcohols could be separated into the effects of solvent polarity and intermolecular hy-drogen-bonding interaction quantitatively.     

A kinetic model for the effects of vanadate on human erythrocyte membrane

The effects of vanadate on human erythrocyte membrane have been investigated with stopped-flow and equilibrium fluorescence quenching techniques. The equilibrium study showed a half-quenching concentration (K_(1/2)) of 0.27 mmol·L~(-1). The stopped-flow experiment exhibited a fast rise (t_(1、2)~f～1s) and a slow drop (t_(1/2)~s 1～2 min) in fluorescence. Based on the results and that from the across membrane transport of vanadate, a kinetic model is proposed which suggests that the membrane proteins experience a series of conformational changes before and during the quenching of the intrinsic fluorescence. These changes are induced mainly by three kinds of interactions: (i) the long-distance, non-specific interaction between the vanadate and the erythrocyte membrane surface, (ⅱ) the charge interaction between the vanadate and parts of the membrane proteins, and(ⅲ) the binding of the vanadate to some membrane proteins.     

Association of Chromosomal Telomere DNA With Nuclear Matrix in HeLa Cell

Using Electron Spectroscopic Imaging (ESI), we visualized the in situ binding of nucleic acids to nuclear matrix and 3H-thymidine incorporation which indicates that a small partial DNA bound to nuclear matrix tightly. Furthermore we found that chromosomal telomere DNA could bind to nuclear matrix specifically by the dot and Southern hybridization. The result of the Southwestern blot suggests that telomere DNA has high affinity to lamin B, vimentin and some nuclear matrix proteins. Therefore, the nuclear matrix and lamina of HeLa cell are possibly associated with spatial organization and action of chromosome.     

Ratiometric fluorescence detection of bleomycin based on proximity-dependent fluorescence conversion of DNA-templated silver nanoclusters

We design a ratiometric fluo rescent sensing platform for bleomycin(BLM) by using proximity-dependent DNA-templated silver nanoclusters(DNA-AgNCs) probe.This ratiometric sensing system is constructed with DNA-AgNCs as single fluorophore.The proposed strategy is based on the two following facts:(1) a covert DNA can approach and transform the DNA-AgNCs with green emission(G-DNA-AgNCs) into red emission through hybridization reaction.(2) The specific cleavage of the convert DNA by BLM in the presence of Fe(Ⅱ) inhibits the discoloration of G-DNA-AgNCs.Thus,benefiting from the specific recognition of BLM and unique properties of G-DNA-AgNCs,a hignly-sensitive ratiometric sensor for BLM has been successfully developed.The detection limit is as low as 30 pmol/L.This label-free fluorescence probe possesses advantages of convenient synthetic process and low cost.Moreover,this ratiometric method has been applied to the detection of BLM in human serum samples,illustrating a promising tool for analysis of BLM in cancer therapy.     

硫黄素T与侧翼连接双链DNA的G-四链体高特异性作用

富G碱基的DNA序列在离子诱导下可形成G-四链体(G4),基于这一构型转化设计了大量的传感检测平台。其中的荧光检测平台是基于G4与荧光小分子的相互作用。但是,G4与荧光小分子的有效结合依赖于G4构型和体系中存在的离子种类和离子浓度,尤其是高Na⁺浓度(140 mmol·L^-1)。那么如何实现G4与荧光小分子普适性地有效结合,并不依赖于体系中的Na⁺和Na⁺浓度,是一个难题。在本研究中,以最简单的富G DNA序列凝血酶适体链TBA (thrombin binding aptamer)为例,在3’端和5’端分别增加10个碱基(TBA-10 bp),K⁺诱导TBA-10 bp形成K⁺稳定TBA (K⁺-TBA,G4)并衔接含有10个互补碱基对的双链DNA (K⁺-TBA-10 bp)。相较于K⁺-TBA,硫磺素T与K⁺-TBA-10 bp结合后的荧光强度增加了100倍,相互作用强度增加了1000倍,而且与体系中的Na⁺ (5-140 mmol·L^-1)无关。结合荧光光谱,紫外吸收光谱和圆二色光谱发现硫磺素T特异性的嵌合于K⁺-TBA和双链DNA衔接处的空腔内。有趣的是,这一结合模式不受G4构型的影响。该研究结果为研究G4与荧光小分子的有效结合提供了新视角,也为拓展G4在生物功能和生化检测领域的应用提供了实验依据。     

基于牛血清白蛋白功能化金纳米棒的荧光探针测定Hg2+

建立了一种以牛血清白蛋白功能化的金纳米棒(BSA-Cys-GNRs)为荧光探针检测Hg²⁺的新方法。以半胱氨酸作为连接臂成功将牛血清白蛋白修饰在金纳米棒表面,通过紫外可见吸收光谱、荧光光谱、红外光谱和荧光倒置显微镜等多种分析方法对材料进行表征。研究发现,在295nm波长光激发下,BSA-Cys-GNRs探针在338nm显示强荧光,而Hg²⁺能够有效地猝灭BSA-Cys-GNRs的荧光。对一系列影响猝灭效果的因素进行考察,得出pH 4.0、孵育时间5.0min为最佳检测条件。Mn²⁺、K⁺、Ni²⁺、Na⁺、Cr³⁺、Cd²⁺、Mg²⁺、Cu²⁺、Ca²⁺、Al³⁺和Zn²⁺对BSA-Cys-GNRs的荧光信号没有明显的影响。当Hg²⁺的浓度为0.04444~8.888μmol·L^-1时,荧光猝灭效率与Hg²⁺的浓度之间存在良好的线性关系,检测限为8.08nmol·L^-1。将该方法用于环境水样中Hg²⁺的检测,回收率为98.9%~105.0%。     

Conformational change detection of DNA with the fluorogenic reagent of o-phthalaldehyde-beta-mercaptoethanol

o-Phthalaldehyde-beta-mercaptoethanol (OPAME) as a fluorogenic reagent has been found wide applications in the detection of amino acids based on its reaction with primary amino groups. In this contribution, we report our new findings concerning the reactions of OPAME with single-stranded DNA (ssDNA) and double-stranded DNA (dsDNA), respectively. It has been found that ssDNA can react with OPAME easily as a result of giving rise to strong fluorescence emissions, while dsDNA, prepared by hybridizing ssDNA with its complementary target prior to the reaction, displays inert chemical activity and gives out weak fluorescence emission. Mechanism investigations have shown that the reaction activity between OPAME and DNA depends on the amino groups that are related to the conformation of uncoiled and exposed extent of DNA structure, and thus the inert chemical activity of dsDNA results from screening of the dsDNA bases in the interior of the double strands. Therefore, we could design a way to detect conformation change of DNA with OPAME and further develop a novel, simple label-free sequence detection method for complementary and single-base mismatched ssDNA in the hybridization of DNA.     

钾离子浓度依赖的铅离子稳定G-四链体构型转化

已有研究普遍认为铅离子(Pb²⁺)诱导富G适体链形成的G-四链体(Pb²⁺-G4)比钾离子(K⁺)诱导富G适体链形成的G-四链体(K⁺-G4)更为稳定,因而Pb²⁺可以置换K⁺-G4中的K⁺,而且K⁺的存在不影响Pb²⁺-G4的稳定性。有趣的是本研究发现K⁺ (20 μmol∙L⁻¹–1 mmol∙L⁻¹)不仅可以诱导10 µmol∙L⁻¹ Pb²⁺稳定的T2TT(Pb²⁺-T2TT,杂合G4结构)发生构型转换,甚至还可取代Pb²⁺-T2TT中的Pb²⁺,形成K⁺稳定的T2TT (K⁺-T2TT,平行G4结构),最终转化形成的K⁺-G4结构与单独K⁺诱导富G适体链形成K⁺-G4的构型基本一致。随后,进一步考察了另外7条富G适体链,发现这一转化过程具有一定的普适性。该研究结果为理解G4构型转化以及内嵌离子交换提供了新的视角,也为拓展G4在生化分析和生物领域的应用提供了新的理论基础。     

Determination of iron(III) with salicylic acid by the fluorescence quenching method

The spectrofluorimetric determination of Fe³⁺ using salicylic acid as an emission reagent has been investigated by measuring the decrease of fluorescence intensity of salicylic acid due to the complexation of Fe³⁺–salicylic acid. An emission peak of salicylic acid, which is decreased linearly by addition of Fe³⁺, occurs at 409 nm in aqueous solution with excitation at 299 nm. The determination of the ferric ion is in the range 1×10⁻⁶–10×10⁻⁶ M Fe³⁺ (0.0558–0.558 μg/ml) and the detection limit is 5×10⁻⁸ M. The quenching effect of Fe³⁺ on the fluorescence intensity of salicylic acid may be considered on the basis of complexation between salicylic acid and Fe³⁺. The effects of foreign ions were investigated.     

Design, synthesis, and characterization of a calcium-sensitive near infrared dye

Intracellular calcium concentration in biological cells varies from 0.1 to 10 μM depending upon cell signaling and disease states. A direct estimate of calcium concentration in cell tissues within this range is possible with a novel calcium-selective reagent 15C5-774. The molecule of 15C5-774 consists of a near-infrared (NIR) chromophore (λ_max=774 nm) and a metal complexing moiety of benzo-15-crown-5. The reagent shows a strong calcium binding affinity in a 1:1 ratio and metal selectivity in the order Ca²⁺>Mg²⁺>Sr²⁺≈K⁺≈Na⁺>Zn²⁺>Li⁺. The high sensitivity is achieved by conducting absorption measurements in the NIR region where background interference from the biological matrix is low.     

On the affinities of ammonia and water for Li, Na and K

The affinities of ammonia for Na⁺ and K⁺, recently determined experimentally, have been computed by the ab initio SCF method using ended polarized gaussian basis sets and shown to be satisfactory Furthermore, the corresponding values computed at the same level of accuracy for the three cations Li⁺, Na⁺, K⁺ and the two ligands NH₃ and H₂O are shown to yield the order Li⁺ > Na⁺ > K⁺ for each ligand and NH₃ > H₂O for each ion, in agreement with experiment. An analysis of the factors involved in the binding provides a consistent rationalization of these regularities and of some observed correlations.     

Fluorimetric determination of aminoglycoside antibiotics using lanthanide probe ion spectroscopy

The application of probe ion fluorimetry has succeeded in the microdetermination of six aminoglycoside antibiotics: neomycin, streptomycin, gentamicin, tobramycin, amikacin and kanamycin as sulfate salts in pure form and in some pharmaceutical preparations. The method is based on the reaction of Eu³⁺ ions with aminoglycosides through amino and hydroxy groups. Such interactions enhance the intensity of the 616 nm fluorescence emission of the Eu³⁺ ion. The fluorescence at 592 nm comes from a non-hypersensitive transition and is not affected by the ligand which is bound to the probe ions. The intensity ratio R, defined as I₅₉₂/I₆₁₆ was used to determine the amount of free and bound europium ions. A linear relationship between bound europium ions and aminoglycoside was found within the concentration ranges 20–100 ppm for neomycin, 5–60 ppm for streptomycin, and 10–70 ppm for gentamicin, tobramycin, amikacin, and kanamycin as sulfate salts. The percentage recoveries ranged from 99.22 to 101.07, with standard deviations ranging from ± 1.5 to ± 4.38. The relative stability constants ranged from 5 × 10³ to 2 × 10⁴. The optimum reaction conditions were studied and the results obtained compared favourably with the fluorimetric method using fluorescmine reagent.     

Azomethine-H as a Highly Selective Fluorescent Probe for Fe3+ Detection in 100％ Aqueous Solution and Its Application in Living Cell Imaging

A simple assay for the detection of Fe³⁺ in water by means of fluorescence spectroscopy was developed based on a commercially available reagent, Azomethine-H(A-H), allowing sensing trace levels of Fe³⁺ with high selectivity over other cations. A significant fluorescence quenching of A-H at 424 nm was found after its binding with Fe³⁺ in 100% aqueous solution at pH=7.0, while other physiologically relevant metal ions posed little interference. The fluorescence responses can be well described by the modified Stern-Volmer equation. A good linear relationship(R²=0.9904) was observed up to 1.6×10^-5 mol/L Fe³⁺ ions. The detection limit, calculated via the 3σ IUPAC(international union of pure and applied chemistry) criteria, was 1.95×10^-7 mol/L. Moreover, the colorimetric and fluorescent response of A-H to Fe³⁺ can be conveniently detected by the naked eye, providing a facile method for visual detection of Fe³⁺. The proposed method was used to determine Fe³⁺ in water samples. Moreover, inverted fluorescence microscopy imaging using human umbilical vein endothelial cells shows that A-H can be used as an effective fluorescent probe for detecting Fe³⁺ in living cells.     

A modular strategy for tailoring fluorescent biosensors from ribonucleopeptide complexes

Fluorescent biosensors that facilitate reagentless sensitive detection of small molecules are crucial tools in the areas of therapeutics and diagnostics. However, construction of fluorescent biosensors with desired characteristics, that is, detection wavelengths and concentration ranges for ligand detection, from macromolecular receptors is not a straightforward task. An ATP-binding ribonucleopeptide (RNP) receptor was converted to a fluorescent ATP sensor without chemically modifying the nucleotide in the ATP-binding RNA. The RNA subunit of the ATP-binding RNP and a peptide modified with a pyrenyl group formed a stable fluorescent RNP complex that showed an increase in the fluorescence intensity upon binding to ATP. The strategy to convert the ATP-binding RNP receptor to a fluorescent ATP sensor was applied to generate fluorescent ATP-binding RNP libraries by using a pool of RNA subunits obtained from the in vitro selection of ATP-binding RNPs and a series of fluorophore-modified peptide subunits. Simple screening of the fluorescent RNP library based on the fluorescence emission intensity changes in the absence and presence of the ligand afforded fluorescent ATP or GTP sensors with emission wavelengths varying from 390 to 670 nm. Screening of the fluorescence emission intensity changes in the presence of increasing concentrations of ATP allowed titration analysis of the fluorescent RNP library, which provided ATP sensors responding at wide concentration ranges of ATP. The combinatorial strategy using the modular RNP receptor reported here enables tailoring of a fluorescent sensor for a specific ligand without knowledge of detailed structural information for the macromolecular receptor.