Study of Host-Guest Complexation of Alkaline Earth Metal Ion,Aluminum Ion and Transition Metal Ions with Crown Ethers by Fast Atom Bombardment Mass Spectrometry

Complexations of crown ethers with alkali metal ions have been investigated extensively by FAB mass spectrometry over the past decade, but very little attention has been paid to reactions of crown ethers with other classes of metal ions such as alkaline earth metal ions, transition metal ions and aluminum ions. Although fast atom bombardment ionization mass spectrometry has proven to be a rapid and convenient method to determine the binding interactions of crown ethers with metal ions, problems in reliabilities for quantitative measurements of” binding strength for the host-guest complexes have been described in the literature. Thus, in this paper, applications of FAB/MS for investigating the complexation of crown ethers with various classes of metal ions is discussed. Extensive fragmentations for neutral losses such as C₂H₄O or C₂H₄ molecules from the host-guest complexes could be observed. The reason is attributed to the energetic bombardment processes of FAB occuring in the formation of these complexes. Complexes of cyclen with metal ions also show neutral losses of C₂H₄NH molecules leading to fragment ions. Transition metal ions usually form (Crown + MCl)⁺ type of ions, alkaline earth metal ions can form both (Crown + MCl)⁺ and (Crown + MOH)⁺ type of ions. But for aluminum ions, only (Crown + Al(OH)₂)⁺ type of ions could he observed.     

Fragmentation of ion–molecule adducts of transition metal ions with aromatic ring-containing nitriles in the gas phase

Gas-phase ion–molecule reactions of transition metal ions, M⁺ (M⁺ = Ni⁺, Co⁺, Fe⁺ and Mn⁺), with six aromatic ring-containing nitriles were investigated in a modified fast atom bombardment (FAB) source. It is shown that the monoadduct, (Ph(CH₂)_nCN)–M⁺, is one of the most abundant ion–molecule reaction products. The main fragments in the FAB source are the [C₇H₇]⁺ and [C₈H₉]⁺ ions, and their formation is shown to involve metal ion insertion into the nitriles rather than direct bond cleavage from the ‘free’ or complexed nitriles after FAB ionization. An intramolecular oxidation–reduction reaction, giving [C₇H₇]⁺, is found in the metastable and collisionally induced dissociations of benzyl nitrile adducts accompanied by neutral MCN formation, but not seen for longer chain samples. An ortho effect is observed in the elimination of HCN from the 2-methylbenzyl nitrile adduct ions. This reaction dominates the metastable ion spectrum of the adduct of Mn⁺, whereas metal detachment is nearly the major process for the other complexes of Mn⁺. The different bond-insertion selectivities of the metal ions are also shown.     

Ion-molecule reactions of cyclopentadienyl- tricarbonylmanganese derivatives with 18-crown-6 in the gas phase

The ion-molecule reactions of 18-crown-6 (L) with ions produced from cymantrene and its derivatives under electron impact are studied. It is shown that RXC₅H₄MnL⁺ ions (RX = the substituent in the cyclopentadienyl ring) can be produced by two reaction pathways: (i) by the addition of RXC₅H₄Mn⁺ to crown ether; and (ii) by the exchange of carbonyl ligands in RXC₅H₄MnCO)_x⁺ ions (x = 1-2) for the macrocyclic molecule. The formation of RMnL⁺ ions, where R = H, Me, Ph, OH, NMe₂, proceeds via the substitution of C₅H₄X in the isomerized form of the decarbonylated ions (RMn⁺C₅H₄X) for L. The relative abundances of the RXC₅H₄MnL⁺ and RMnL⁺ ions provide information about the structure of the RXC₅H₄Mn⁺ ions. The probability of synthesizing stable “sandwich” species of the C₅H₄Mn⁺ type in the condensed phase is predicted.     

A study of metal chelation of dinucleotide analogs in the gas phase by fast-atom bombardment mass spectrometry

Fast-atom bombardment (FAB) mass spectrometry was used to investigate the interaction of proton and alkali metal ions with dinucleotide analogs such as T-n-T (T = thymine moiety, n = polyether chain, e.g., triethylene, tetraethylene, pentaethylene, and hexaethylene ether 1–4), A-n-T (A = adenine unit 5–8), and T-n-OMe (9–12) in 3-nitrobenzyl alcohol matrix. The [M + H]⁺ ion is the most abundant ion for the A-n-T series, whereas in 1–4 and 9–12 the (TC₂H₄)⁺ ion is the most abundant. Formation of [M + H -C₂H₄O]⁺ ions, a characteristic fragmentation of crown ethers under electron ionization, is observed for compounds 1–12 and is more pronounced in 6 and 7. An abundant [M ? H]^? ion is observed for all the compounds studied under negative ion FAB due to the presence of the (-CO-NH-CO-) group of thymine, an indication of existence of intramolecular H bonding. The FAB mass spectra of 1–12 with alkali metal ions (Li⁺, Na⁺, K⁺, Rb⁺, and Cs⁺) showed formation of abundant metal-coordinated ions ([M + Met]⁺ and [TC₂H₄ + Met]⁺). Compounds 3, 4, 6, 7, and 10–12 showed ions due to the substitution of the thymine moiety by a hydroxyl group ([M + Met ? 108]⁺, Met = metal ion). For compound 3 alone, substitution of two thymine groups ([M + Met - 216]⁺) was observed. Metastable ion studies were used to elucidate the structures of these potentially significant ions, and the ion formule were confirmed with high resolution measurements. Selectivity toward metal complexation with ligand size was seen in the T-n-T and A-n-T series and was even more pronounced in A-n-T series. These dinucleotide analogs fall in the following order of chelation of alkali metal ions, acyclic glymes < dinucleotide analogs (acyclic glymes substituted with nitrogen bases) < crown ethers, which places them in perspective as receptor models.     

Synthesis of 2-(diphenylphosphoryl)phenyl ethers of ethylene glycols and structure of their sodium and potassium complexes

Phase-transfer catalysis and template assembly on sodium and cesium cations were used to prepare 2-(diphenylphosphoryl)phenyl ethers of ethylene glycols Lⁿ with varied number of polyether units (n = 3–8). Previously unknown dinitro and disulfo derivatives of 2-(diphenylphosphoryl)phenyl ethers of di- and triethylene glycols were synthesized. Complexes [NaL⁴]NCS·C₆H₆, [NaL⁴]ClO₄, [KL⁵]NCS, and [KL⁵]ReO₄ were synthesized, and their crystal structure was studied. Structure–stability constant correlations were found for alkali metal complexes with phosphoryl podands Lⁿ and isodentate crown ethers.     

Determination of orders of relative alkali metal ion affinities of crown ethers and acyclic analogs by the kinetic method

Ladders of relative alkali ion affinities of crown ethers and acyclic analogs were constructed by using the kinetic method. The adducts consisting of two different ethers bound by an alkali metal ion, (M₁ + Cat + M₂)⁺, were formed by using fast atom bombardment ionization to desorb the crown ethers and alkali metal ions, then collisionally activated to induce dissociation to (M₁ + Cat)⁺ and (M₂ + Cat)⁺ ions. Based on the relative abundances of the cationized ethers formed, orders of relative alkali ion affinities were assigned. The crown ethers showed higher affinities for specific sizes of metal ions, and this was attributed in part to the optimal spatial fit concept. Size selectivities were more pronounced for the smaller alkali metal ions such as Li⁺, Na⁺, and K⁺ than the larger ions such as Cs⁺ and Rb⁺. In general, the cyclic ethers exhibited greater alkali metal ion affinities than the corresponding acyclic analogs, although these effects were less dramatic as the size of the alkali metal ion increased.     

Mass spectrometry of π-complexes of transition metals : XVII. Ionm̄olecule reaction products in mass spectra of mixtures of π-cyclopentadienyl- and π-arenemetal carbonyls with aromatic and heterocyclic compounds

Ion—molecule reactions occur in the ionization chamber of a mass spectrometer during the combined vaporization of arenechromium tricarbonyls (ArCr(CO)₃, Ar = C₆H₆, C₆H₅Cl, C₆H₅N(CH₃)₂, C₄H₄S, C₄H₄Se) and cyclopentadienylmetal carbonyls (C₅H₄RM(CO)_n, M and R = Mn, H;Mn, Cl; Mn, Br; Mn, COCH₃; Re, H; V, H) with various aromatic and heterocyclic compounds (L). In all cases secondary ions of sandwich type [ArCrL]⁺ or [C₅H₄RML]⁺ containing a new metalligand bond are formed.     

A tandem mass spectrometry study of the gas phase RSC6H5Cr+L (R = H,C6H5; L = arene) and C6H5SSC6H5Cr+ ions

Ion-molecule reactions of chromium containing ions with arylsulfides have been studied in the gas phase and their products have been characterized by tandem mass spectrometry. C₆H₅SH and (C₆H₅)₂S react as typical aromatic compounds and give rise to Cr⁺C₆H₅SR] and RC₆H₅Cr⁺QH₅SR′ [R = H, CH₃, CH(CH₃)₂; R′ = H, C₆H₅] ions. Metastable ion mass spectra of the latter species show that the metal is more strongly bound to diphenylsulfide than to alkylbenzenes. C₆H₅SSC₆H₅ reacts with chromium-containing ions to form only Cr⁺(C₆H₅SSC₆H₅). The decomposition characteristics of this ion and, in particular, the presence of a recovery signal in the neutralization-reionization mass spectrum are in keeping with the formation of a 1,2-dithia[2]cyclophane complex ion, which rearranges into a structurel(s) that contains Cr?S bond(s). No evidence was found for metal atom insertion into S?S, C?S, or S?H bonds.     

Komplexe der Alkalimetalltetraphenylborate mit makrocyclischen Kronenethern

Complexes of the Alkali Metal Tetraphenylborates with Macrocyclic Crown Ethers Alkali metal tetraphenylborates, MB(C₆H₅)₄ (M = Li to Cs), react in tetrahydrofuran with macrocyclic crown ethers to give complexes of the general formula MB(C₆H₅)₄(crown)_m(THF)_n. Suitable single crystals for X‐ray structure analysis were grown from a solvent mixture of tetrahydrofuran and n‐hexane. The salt like complexes [Li(12‐crown‐4)(thf)][B(C₆H₅)₄] ( 1 ), [Na(15‐crown‐5)(thf)][B(C₆H₅)₄] ( 2 ), and [Cs(18‐crown‐6)₂][B(C₆H₅)₄] · THF ( 6 ), the mononuclear molecular complexes [KB(C₆H₅)₄(18‐crown‐6)(thf)] ( 3 ), [RbB(C₆H₅)₄(18‐crown‐6)] ( 4 ), and [CsB(C₆H₅)₄(18‐crown‐6)] · THF ( 5 ), and the compound [CsB(C₆H₅)₄(18‐crown‐6)]₂[Cs(18‐crown‐6)₂][B(C₆H₅)₄] ( 7 ), which contains a binuclear molecule ([CsB(C₆H₅)₄(18‐crown‐6)]₂) beside a [Cs(18‐crown‐6)₂]⁺ cation and a [B(C₆H₅)₄]^? anion, are described. All compounds are charactarized by infrared spectra, elemental analysis, NMR‐spectroscopy, and X‐ray single crystal structure analysis.     

Homoatomic Rings,Chains and Macromolecules of Main Group Elements : edited by A.L. Rheingold. Elsevier Scientific Publishing Co., Amsterdam - Oxford - New York, 1977, xvi + 616 pages,Dfl. 195.00; U.S. $79.95.

Nucleophilic substitution is correlated with the frontier electron density parameter, the partial valence-inactive population (P^LUMO_A) for two series of polyene-M(CO)₃ complexes, AM(CO)₃ (A = C₆H₆Cr, C₅H₅Mn, C₄H₄Fe, C₃H₅Co and C₂H₄Ni) and [BFe(CO)₃]⁺ (B = C₅H₅, C₆H₇ and C₇H₉). In both series nucleophilic substitution by an S_N2 process is shown as probably occurring by initial attack at the metal atom.     

Ion/molecule reactions of ammonia and methylamine with chloro- and nitrobenzene. A comparison of chemical ionization and ion cyclotron resonance experiments

It is shown by ion cyclotron resonance measurements that ion/molecule reactions, leading to substitution or reduction product ions from chloro- and nitrobenzene with the title amines, are those between the molecular ions [RNH₂]⁺ or [C₆H₅X]⁺˙ and their respective counterparts C₆H₅X or RNH₂. The protonated reagent gas ions [RNH₃]⁺ are not involved in these reactions. In the case of nitrobenzene, adduct ions [C₆H₅NO₂·RNH₃]⁺ do not decompose within the time scale of the measurements. The results obtained are compared with those found under chemical ionization conditions.     

A Zeolite‐Supported Molecular Ruthenium Complex with η6‐C6H6 Ligands: Chemistry Elucidated by Using Spectroscopy and Density Functional Theory

An essentially molecular ruthenium–benzene complex anchored at the aluminum sites of dealuminated zeolite Y was formed by treating a zeolite‐supported mononuclear ruthenium complex, [Ru(acac)(η²‐C₂H₄)₂]⁺ (acac=acetylacetonate, C₅H₇O₂^?), with ¹³C₆H₆ at 413 K. IR, ¹³C NMR, and extended X‐ray absorption fine structure (EXAFS) spectra of the sample reveal the replacement of two ethene ligands and one acac ligand in the original complex with one ¹³C₆H₆ ligand and the formation of adsorbed protonated acac (Hacac). The EXAFS results indicate that the supported [Ru(η⁶‐C₆H₆)]²⁺ incorporates an oxygen atom of the support to balance the charge, being bonded to the zeolite through three Ru? O bonds. The supported ruthenium–benzene complex is analogous to complexes with polyoxometalate ligands, consistent with the high structural uniformity of the zeolite‐supported species, which led to good agreement between the spectra and calculations at the density functional theory level. The calculations show that the interaction of the zeolite with the Hacac formed on treatment of the original complex with ¹³C₆H₆ drives the reaction to form the ruthenium–benzene complex.     

An ESR study of some group IVB free radical adducts of diethylketomalonate

The formation of the compound RSnX(acac)₂ (acac = 2,4-pentanedionato) by reaction of bis(2,4-pentanedionato)tin(II) on a halide RX with R = CH₃, C₂H₅, C₄H₉, C₆H₅, CH₂I, (C₆H₅)₃SnCH₂, (C₂H₅)₃SnCH₂ and X = I, Br has been studied by polarography. At 25°C, it is in fact an equilibrium whose constant has been measured. The intermediate formation of the ion-pair [RSn(acac)₂⁺X^?] has allowed us to explain the experimental results.     

Ion formation in fast atom bombardment mass spectrometry: a divided probe investigation of gas-phase reactions

Some ion-formation processes during fast atom bombardment (FAB) are discussed, especially the possibility of reactions in the gas phase. Divided (two halves) FAB probe tips were used for introducing two different samples into the source at the same time. Our results showed [M + A]⁺ ions (where M = crown ethers and A = alkali metal ions), can be produced, at least in part, in the gas phase when crown ethers and sources of alkali metal ion are placed on two halves of the FAB probe tip. The extent of this ion formation depends on the volatility of the crown ether and on steric factors. Cluster ions such as (M + LiCl)Li⁺, (2M + LiCl)Li⁺, [2M + K]⁺ and [2M + Na]⁺ are also observed to form in the gas phase. Unimolecular decompositions contribute to some ions detected in FAB. When the alkali ion salt and the crown ether are mixed together the probability of [M + A]⁺ ion formation increases significantly, regardless of the volatility of the crown ether.     

Metastable ion study of substituted cyclopentadienylmanganese cations in the gas phase

The behavior of some substituted cyclopentadienylmanganese ions has been studied by tandem mass spectrometry. This metastable ion study showed that only C₅H₅Mn⁺ and (C₅H₄CN)Mn⁺ ions retain their nido-cluster structure (1), which is characterized by a simple metal-ligand bond cleavage. Other substituted ions, RXC₅H₄Mn⁺, rearrange to a different extent, depending on the nature of the substituent. The first rearrangement step is R radical migration to the central metal atom, leading to RMnC₅H₄X⁺-type ions (2). These ions decompose by elimination of X (for X=CO) or with formation of RMnX⁺, but further rearrangements can also occur. These are the reverse migration of R from the metal atom to the π-ligand (for R=H, Ph) and cyclopentadienyl ring expansion (for X=CH₂). Collisional activation mass spectra contained an Mn⁺ ion peak, which can indicate the existence of stable type 1 structures for most cyclopentadienylmanganese ions. Carboxyl and hydroxymethyl derivatives exist, presumably as ions of type 2. The neutralization-reionization mass spectra of RXC₅H₄Mn⁺ ions are also discussed.     

Structural Variations and Molecular Dynamics of Rare‐Earth Metal Complexes with the N,N‐Bis(2‐{pyrid‐2‐yl}ethyl)hydroxylaminato Ligand

The reaction of the donor‐functionalised N,N‐bis(2‐{pyrid‐2‐yl}ethyl)hydroxylamine and [LnCp₃] (Cp=cyclopentadiene) resulted in the formation of bis(cyclopentadienyl) hydroxylaminato rare‐earth metal complexes of the general constitution [Ln(C₅H₅)₂{ON(C₂H₄‐o‐Py)₂}] (Py= pyridyl) with Ln=Lu ( 1 ), Y ( 2 ), Ho ( 3 ), Sm ( 4 ), Nd ( 5 ), Pr ( 6 ), La ( 7 ). These compounds were characterised by elemental analysis, mass spectrometry, NMR spectroscopy (for compounds 1 , 2 , 4 and 7 ) and single‐crystal X‐ray diffraction experiments. The complexes exhibit three different aggregation modes and binding motifs in the solid state. The late rare‐earth metal atoms (Lu, Y, Ho and Sm) form monomeric complexes of the formula [Ln(C₅H₅)₂{η²‐ON(C₂H₄‐η¹‐o‐Py)(C₂H₄‐o‐Py)}] ( 1 – 4 , respectively), in which one of the pyridyl nitrogen donor atoms is bonded to the metal atom in addition to the side‐on coordinating hydroxylaminato unit. The larger Nd³⁺ and Pr³⁺ ions in 5 and 6 make the hydroxylaminato unit capable of dimerising through the oxygen atoms. This leads to the dimeric complexes [(Ln(C₅H₅)₂{μ‐η¹:η²‐ON(C₂H₄‐o‐Py)₂})₂] without metal–pyridine bonds. Compound 7 exhibits a dimeric coordination mode similar to the complexes 5 and 6 , but, in addition, two pyridyl functions coordinate to the lanthanum atoms leading to the [(La(C₅H₅)₂{ON(C₂H₄‐o‐Py)}{μ‐η¹:η²‐ON(C₂H₄‐η¹‐o‐Py)})₂] complex. The aggregation trend is directly related to the size of the metal ions. The complexes with coordinative pyridine–metal bonds show highly dynamic behaviour in solution. The two pyridine nitrogen atoms rapidly change their coordination to the metal atom at ambient temperature. Variable‐temperature (VT) NMR experiments showed that this dynamic exchange can be frozen on the NMR timescale.     

Syntheses,and Crystal Structures of Indium Complexes with η2‐Piperidinyldithiocarbamate and η2‐Pyridine‐2‐Thionate Containing Ligands: Structures of [In(η2‐S2CNC5H10)3] and [In(η2‐pyS)3]

The η²‐thio‐indium complexes [In(η²‐thio)₃] (thio = S₂CNC₅H₁₀, 2 ; SNC₄H₄, (pyridine‐2‐thionate, pyS, 3 ) and [In(η²‐pyS)₂(η²‐acac)], 4 , (acac: acetylacetonate) are prepared by reacting the tris(η²‐acac)indium complex [In(η²‐acac)₃], 1 with HS₂CNC₅H₁₀, pySH, and pySH with ratios of 1:3, 1:3, and 1:2 in dichloromethane at room temperature, respectively. All of these complexes are identified by spectroscopic methods and complexes 2 and 3 are determined by single‐crystal X‐ray diffraction. Crystal data for 2 : space group, C2/c with a = 13.5489(8) Å, b = 12.1821(7) Å, c = 16.0893(10) Å, β = 101.654(1)°, V = 2600.9(3) ų, and Z = 4. The structure was refined to R = 0.033 and Rw = 0.086; Crystal data for 3 : space group, P2₁ with a = 8.8064 (6) Å, b = 11.7047 (8) Å, c = 9.4046 (7) Å, β = 114.78 (1)°, V = 880.13(11) ų, and Z = 2. The structure was refined to R = 0.030 and Rw = 0.061. The geometry around the metal atom of the two complexes is a trigonal prismatic coordination. The piperidinyldithiocarbamate and pyridine‐2‐thionate ligands, respectively, coordinate to the indium metal center through the two sulfur atoms and one sulfur and one nitrogen atoms, respectively. The short C‐N bond length in the range of 1.322(4)–1.381(6) Å in 2 and C‐S bond length in the range of 1.715(2)–1.753(6) Å in 2 and 3 , respectively, indicate considerable partial double bond character.     

Design and Synthesis of Calixarene‐Based Bis‐alkynyl‐Bridged Dinuclear AuI Isonitrile Complexes as Luminescent Ion Probes by the Modulation of Au⋅⋅⋅Au Interactions

Two calixarene‐based bis‐alkynyl‐bridged Au^I isonitrile complexes with two different crown ether pendants, [{calix[4]arene‐(OCH₂CONH‐C₆H₄C≡C)₂}{Au(CNR)}₂] (R=benzo[15]crown‐5 ( 1 ); R=benzo[18]crown‐6 ( 2 )), together with their related crown‐free analogue 3 (R=C₆H₃(OMe)₂‐3,4) and a mononuclear gold(I) complex 4 with benzo[15]crown‐5 pendant, have been designed and synthesized, and their photophysical properties have been studied. The X‐ray structure of the ligand, calix[4]arene‐(OCH₂CONH‐C₆H₄C?CH)₂ has been determined. The cation‐binding properties of these complexes with various metal ions have been studied using UV/Vis, emission, ¹H NMR, and ESI‐MS techniques, and DFT calculations. A new low‐energy emission band associated with Au???Au interaction could be switched on upon formation of the metal ion‐bound adduct in a sandwich fashion.     

Chemical ionization of phenyl n-propyl ether and methyl substituted analogs: Propene loss initiated by competing proton transfer to the oxygen atom and the aromatic ring

The mechanism of propene loss from protonated phenyl n-propyl ether and a series of mono-, di-, and trimethylphenyl n-propyl ethers has been examined by chemical ionization (CI) mass spectrometry in combination with tandem mass spectrometry experiments. The role of initial proton transfer to the oxygen atom and the aromatic ring, respectively, has been probed with the use of deuterated CI reagents, D₂O, CD₃OD, and CD₃CN (given in order of increasing proton affinity), in combination with deuterium labeling of the β position of the n-propyl group or the phenyl ring. The metastable [M + D]⁺ ions of phenyl n-propyl ether—formed with D₂O as the CI reagent—eliminate C₃H₅D and C₃H₆ in a ratio of 10:90, which indicates that the added deuteron is incorporated to a minor extent in the expelled neutral species. In the experiments with CD₃OD as the CI reagent, the ratio between the losses of C₃H₅D and C₃H₆ from the metastable [M + D]⁺ ions of phenyl n-propyl ether is 18:82, whereas the ratio becomes 27:73 with CD₃CN as the reagent. A similar trend in the tendency to expel a propene molecule that contains the added deuteron is observed for the metastable [M + D]⁺ ions of phenyl n-propyl ether labeled at the β position of the alkyl group. Incorporation of a hydrogen atom that originates from the aromatic ring in the expelled propene molecule is of negligible importance as revealed by the minor loss of C₃H₅D from the metastable [M + H]⁺ ions of C₆D₅OCH₂CH₂CH₃ irrespective of whether H₂O, CH₃OH, or CH₃CN is the CI reagent. The combined results for the [M + D]⁺ ions of phenyl n-propyl ether and deuterium-labeled analogs are suggested to be in line with a model that assumes that propene loss occurs not only from species formed by deuteron transfer to the oxygen atom, but also from ions generated by deuteron transfer to the ring. This is substantiated by the results for the methyl-substituted ethers, which reveal that the position as well as the number of methyl groups bonded to the ring exert a marked effect on the relative importances of the losses of C₃H₅D and C₃H₆ from the metastable [M + D]⁺ ions of the unlabeled methyl-substituted species.     

Supramolecular hydrogen‐bonding patterns in the organic–inorganic hybrid compound bis(4‐amino‐5‐chloro‐2,6‐dimethylpyrimidinium) tetrathiocyanatozinc(II)–4‐amino‐5‐chloro‐2,6‐dimethylpyrimidine–water (1/2/2)

Zinc thiocyanate complexes have been found to be biologically active compounds. Zinc is also an essential element for the normal function of most organisms and is the main constituent in a number of metalloenzyme proteins. Pyrimidine and aminopyrimidine derivatives are biologically very important as they are components of nucleic acids. Thiocyanate ions can bridge metal ions by employing both their N and S atoms for coordination. They can play an important role in assembling different coordination structures and yield an interesting variety of one‐, two‐ and three‐dimensional polymeric metal–thiocyanate supramolecular frameworks. The structure of a new zinc thiocyanate–aminopyrimidine organic–inorganic compound, (C₆H₉ClN₃)₂[Zn(NCS)₄]·2C₆H₈ClN₃·2H₂O, is reported. The asymmetric unit consist of half a tetrathiocyanatozinc(II) dianion, an uncoordinated 4‐amino‐5‐chloro‐2,6‐dimethylpyrimidinium cation, a 4‐amino‐5‐chloro‐2,6‐dimethylpyrimidine molecule and a water molecule. The Zn^II atom adopts a distorted tetrahedral coordination geometry and is coordinated by four N atoms from the thiocyanate anions. The Zn^II atom is located on a special position (twofold axis of symmetry). The pyrimidinium cation and the pyrimidine molecule are not coordinated to the Zn^II atom, but are hydrogen bonded to the uncoordinated water molecules and the metal‐coordinated thiocyanate ligands. The pyrimidine molecules and pyrimidinium cations also form base‐pair‐like structures with an R₂²(8) ring motif via N—H…N hydrogen bonds. The crystal structure is further stabilized by intermolecular N—H…O, O—H…S, N—H…S and O—H…N hydrogen bonds, by intramolecular N—H…Cl and C—H…Cl hydrogen bonds, and also by π–π stacking interactions.