Factors controlling the mechanism of NAD(+) non-redox reactions

β-Nicotinamide adenine dinucleotide (NAD(+)) is an indispensable coenzyme or substrate for enzymes involved in catalyzing redox and non-redox reactions. ADP-ribosylating enzymes catalyze cleavage of the nicotinamide-glycosyl bond of NAD(+) and addition of a nucleophilic group from their substrate proteins to the N-ribose anomeric carbon of NAD(+). Although the role of the nicotinamide-ribose fragment in the mechanism of NAD(+) hydrolysis has been examined, the role of the doubly negatively charged, flexible, and chemically reactive NAD(+) diphosphate moiety in the reaction process has largely been neglected. Thus, the participation of the pyrophosphate group in stabilizing intra- and intermolecular interactions in the ground state and transition state has not been explored. Furthermore, the roles of other factors such as the type/nucleophilicity of the attacking nucleophile and the medium in influencing the reaction pathway have not been systematically evaluated. In this study, we endeavor to fill in these gaps and elucidate the role of these factors in controlling the NAD(+) nicotinamide-glycosyl bond cleavage. Using density functional theory combined with continuum dielectric methods, we modeled both S(N)1 and S(N)2 reaction pathways and assessed the role of the diphosphate group in stabilizing the (i) NAD(+) ground state, (ii) oxocarbocation intermediate, (iii) reaction product, and (iv) nucleophile. We also assessed the chemical nature of the attacking nucleophile and the role of the protein matrix in affecting the reaction mechanism. Our results reveal an intricate interplay among various factors in controlling the reaction pathway, which in turn suggests ways in which the enzyme can accelerate the reaction.     

Polymer-supported 1,4-dihydronicotinamide:Synthesis and Application in the Reduction of the Activated Olefins

Three new polymer-supported NAD(P)H models (Ⅰ, Ⅱ, Ⅲ) were designed and synthesized, which can efficiently reduce many activated olefins under mild conditions.1 The most advantageous featureof the three NAD(P)H models is (i) easy work-up and separation of the reaction products and (ii) good potential for recycle use of the NAD(P)H models, which makes the three new polymer-supported NAD(P)H models a promising alternative both in research laboratories and in industrial processes.     

Biohydrogenation from biomass sugar mediated by in vitro synthetic enzymatic pathways

Different from NAD(P)H regeneration approaches mediated by a single enzyme or a whole-cell microorganism, we demonstrate high-yield generation of NAD(P)H from a renewable biomass sugar--cellobiose through in vitro synthetic enzymatic pathways consisting of 12 purified enzymes and coenzymes. When the NAD(P)H generation system was coupled with its consumption reaction mediated by xylose reductase, the NADPH yield was as high as 11.4 mol NADPH per cellobiose (i.e., 95% of theoretical yield--12 NADPH per glucose unit) in a batch reaction. Consolidation of endothermic reactions and exothermic reactions in one pot results in a very high energy-retaining efficiency of 99.6% from xylose and cellobiose to xylitol. The combination of this high-yield and projected low-cost biohydrogenation and aqueous phase reforming may be important for the production of sulfur-free liquid jet fuel in the future.     

Unusual enzymatic hydrolysis of NAD by solubilized form of NAD(+) glycohydrolase

Using solubilized form (sNADase) of membrane-bound porcine brain NAD(+) glycohydrolase (pNADase), the NADase-catalyzed hydrolysis and transglycosidation reactions of NAD (1) were examined. Unexpectedly, products in the reactions were found to be nicotinamide (5'-O-diphosphono)-beta-D-ribofuranoside (4) and adenosine (5). Adenosine 5'-diphosphate (ADP)-ribose (2) and nicotinamide (3) as well as a transglycosylated product, which are formed in a usual NAD/pNADase reaction system, were scarcely produced in the NAD/sNADase system. Setting aside the mechanical aspects of this unusual cleaving, it is quite interesting that the sNADase-catalyzed hydrolytic reaction of NAD resulted in the selective cleavage of the P-O bond of the adenosine side without the appreciable hydrolysis of the labile quaternary nicotinamide-ribose pyridinium linkage.     

Determination of lactate and lactic dehydrogenase by biamperometric monitoring of hexacyanoferrate(II) in a flowing stream

Summary Open tubular carbon electrodes were used to monitor the biamperometric current of hexacyanoferrate(II) ion produced by the LDH catalyzed reaction between hexacyanoferrate(III) ion and lactate, and that produced from the diaphorase catalyzed reaction between hexacyanoferrate(III) ion and NADH, product from the LDH catalyzed reaction between lactate and NAD. Reagents and samples were mixed in a flow stream. Reaction takes place between the mixing point and the electrodes, and measurements are taken after a constant time interval. Lactate and LDH standards in serum control solutions were measured using the NAD dependent reaction.

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Bestimmung von Lactat und Lactatdehydrogenase durch biamperometrische Messung von Hexacyanoferrat(II) im Durchfluß

Zusammenfassung Kohlenstoff-Röhrenelektroden wurden zur Messung des biamperometrischen Stromes des Hexacyanoferrat(II)-ions eingesetzt, das aus der LDH-katalysierten Reaktion zwischen Hexacyanoferrat(III) und Lactat bzw. der Diaphorase-katalysierten Reaktion zwischen Hexacyanoferrat(III) und NADH (Produkt der LDH-katalysierten Reaktion zwischen Lactat und NAD) stammte. Die Reagentien wurden mit den Proben im Durchfluß vermischt. Die Reaktion fand zwischen der Mischungsstelle und den Elektroden statt und die Messungen wurden nach einem Bestimmten Zeitintervall durchgeführt. Mit Hilfe der NAD-abhängigen Reaktion wurden Lactat- und LDH-Standards in Serumkontrollösungen bestimmt.

     

示差脉冲伏安法测定乳酸脱氢酶活性及纳米微粒生物毒性检测新方法研究

采用示差脉冲伏安法，在乳酸脱氢酶(LDH)酶促体系“丙酮酸盐 + NADH +H⁺ (?) 乳酸盐 + NAD⁺”中，通过检测NAD⁺还原峰电流的变化，测定了不同条件下(不同酶用量、缓冲液pH值以及温度)LDH的活性、酶促体系的米氏常数K_m^NADH以及最大反应速率v_max。并且在最佳实验条件下，通过检测LDH活性的改变，实验考察了3种纳米物质(ZnS，TiO₂(R)和TiO₂(A))对乳酸脱氢酶酶促体系的影响。     

Photoexcitation of the methionine-iron bond in iron(III) cytochrome c: bimolecular reaction with NADH

When iron(III) cytochrome c aqueous solutions containing NADH are irradiated with polychromatic light (wavelength greater than 280 nm), iron(II) cytochrome c and NAD+ in the stoichiometric ratio 2/1 are observed to be the principal reaction products, independently of the presence of oxygen; in addition, a minor process due to direct photodegradation of the nucleotide is observed. The selection of monochromatic 290 nm irradiation light (at which NADH has an absorbance minimum) and an adequate reactant concentration allowed parallel reactions to be minimized and new information to be obtained on the mechanism of the photoredox process. The experimental results are consistent with a reaction mechanism whereby NADH donates one electron to a "reactive intermediate" of the hemoprotein formed from the light-induced methionine-to-iron charge transfer excited state. In this process an NAD. radical is formed which, in deaerated solution, immediately reduces another molecule of the hemoprotein, and is itself oxidized to NAD+. In aerated solution, the NAD. radical rapidly reacts with oxygen to give NAD+ and superoxide O2- anion radical which, in turn, reduces the second iron(III) cytochrome c molecule.     

A ligation-triggered DNAzyme cascade for amplified fluorescence detection of biological small molecules with zero-background signal

Many types of fluorescent sensing systems have been reported for biological small molecules. Particularly, several methods have been developed for the recognition of ATP or NAD(+), but they only show moderate sensitivity, and they cannot discriminate either ATP or NAD(+) from their respective analogues. We have addressed these limitations and report here a dual strategy which combines split DNAzyme-based background reduction with catalytic and molecular beacon (CAMB)-based amplified detection to develop a ligation-triggered DNAzyme cascade, resulting in ultrahigh sensitivity. First, the 8-17 DNAzyme is split into two separate oligonucleotide fragments as the building blocks for the DNA ligation reaction, thereby providing a zero-background signal to improve overall sensitivity. Next, a CAMB strategy is further employed for amplified signal detection achieved through cycling and regenerating the DNAzyme to realize the true enzymatic multiple turnover (one enzyme catalyzes the cleavage of several substrates) of catalytic beacons. This combination of zero-background signal and signal amplification significantly improves the sensitivity of the sensing systems, resulting in detection limits of 100 and 50 pM for ATP and NAD(+), respectively, much lower than those of previously reported biosensors. Moreover, by taking advantage of the highly specific biomolecule-dependence of the DNA ligation reaction, the developed DNAzyme cascades show significantly high selectivity toward the target cofactor (ATP or NAD(+)), and the target biological small molecule can be distinguished from its analogues. Therefore, as a new and universal platform for the design of DNA ligation reaction-based sensing systems, this novel ligation-triggered DNAzyme cascade method may find a broad spectrum of applications in both environmental and biomedical fields.     

Catalytic Biomimetic Asymmetric Reduction of Alkenes and Imines Enabled by Chiral and Regenerable NAD(P)H Models

The development of biomimetic chemistry based on the NAD(P)H with hydrogen gas as terminal reductant is a long‐standing challenge. Through rational design of the chiral and regenerable NAD(P)H analogues based on planar‐chiral ferrocene, a biomimetic asymmetric reduction has been realized using bench‐stable Lewis acids as transfer catalysts. A broad set of alkenes and imines could be reduced with up to 98 % yield and 98 % ee, likely enabled by enzyme‐like cooperative bifunctional activation. This reaction represents the first general biomimetic asymmetric reduction (BMAR) process enabled by chiral and regenerable NAD(P)H analogues. This concept demonstrates catalytic utility of a chiral coenzyme NAD(P)H in asymmetric catalysis.     

Coulometric determination of NAD+ and NADH in normal and cancer cells using LDH, RVC and a polymer mediator

An electrochemical method for the measurement of NAD(+) and NADH in normal and cancer tissues using flow injection analysis (FIA) is reported. Reticulated vitreous carbon (RVC) electrodes with entrapped l-lactate dehydrogenase (LDH) and a new redox polymer containing covalently bound toluidine blue O (TBO) were employed for this purpose. Both NAD(+) and NADH were estimated coulometrically based on their reaction with LDH. The latter was immobilized on controlled pore glass (CPG) by cross-linking with glutaraldehyde and packed within the RVC. The concentrations of NAD(+) and NADH in the tissues, estimated using different electron mediators such as ferricyanide (FCN), meldola blue (MB) and TBO have also been compared. The effects of flow rate, pH, applied potential (versus Ag/AgCl reference) and adsorption of the mediators have also been investigated. Based on the measurements of NAD(+) and NADH in normal and cancer tissues it has been concluded that the NADH concentration is lower, while the NAD(+) concentration is higher in cancer tissues. Amongst the electron mediators TBO was found to be a more stable mediator for such measurements.     

High-Sensitive Visually Controlled Membrane-Type Quantitation of NAD and Alkaline Phosphatase

Abstract

New high-sensitive visually controlled membrane-type analytical methods are proposed for quantitation of nicotineamide adenine dinucleotide and alkaline phosphatase in water solutions. The methods are based on using nitrocellulose membrane as a solid matrix on which the components of one-enzyme cofactor regeneration system are being immobilised by adsorption. In the presence of substances to be assayed, the end colored product is being adsorbed on the matrix as a result of enzymatic cyclic NAD/NADH regeneration in the active site of the matrix-bound alcohol dehydrogenase and some chemical successive reactions. Its colored intensity is a measure of the concentration of the analysed substances in solution. The general principle of NAD or alkaline phosphatase determination is successive immobilisation of separate components of the system (N-(6′-aminohexyl)salicylamide and horse liver alcohol dehydrogenase) on the matrix by adding their solutions to the wells of a specially designed cell with the membrane bottoms. In the case of alkaline phosphatase, the enzyme acted on NADPH as on a substrate. The reaction product, NAD was detected in the subsequent reaction of coenzyme regeneration. The other components of the amplifying system were added in substrate solutions at the stage of the alcohol dehydrogenase reaction. The lower detection limits for NAD and alkaline phosphatase were 3 × 10^?9 M and 1 × 10^?14 M respectively, the volume of the test sample ? 20 μl, the time of assay ? 5 min. The working concentration ranges were from 3 × 10^?9 to 1 × 10^?7 M and from 1 × 10^?14 to 1 × 10^?10 M levels for NAD(H) and alkaline phosphatase, respectively.     

Creation of bioorthogonal redox systems depending on nicotinamide flucytosine dinucleotide

Many enzymes catalyzing biological redox chemistry depend on the omnipresent cofactor, nicotinamide adenine dinucleotide (NAD). NAD is also involved in various nonredox processes. It remains challenging to disconnect one particular NAD-dependent reaction from all others. Here we present a bioorthogonal system that catalyzes the oxidative decarboxylation of l-malate with a dedicated abiotic cofactor, nicotinamide flucytosine dinucleotide (NFCD). By screening the multisite saturated mutagenesis libraries of the NAD-dependent malic enzyme (ME), we identified the mutant ME-L310R/Q401C, which showed excellent activity with NFCD, yet marginal activity with NAD. We found that another synthetic cofactor, nicotinamide cytosine dinucleotide (NCD), also displayed similar activity with the ME mutants. Inspired by these observations, we mutated d-lactate dehydrogenase (DLDH) and malate dehydrogenase (MDH) to DLDH-V152R and MDH-L6R, respectively, and both mutants showed fully active with NFCD. When coupled with DLDH-V152R, ME-L310R/Q401C required only a catalytic amount of NFCD to convert l-malate. Our results opened the window to engineer bioorthogonal redox systems for a wide variety of applications in systems biology and synthetic biology.     

Enzyme monolayer- and bilayer-modified electrodes with diaphorase and dehydrogenases

Diaphorase was immobilized covalently as a monolayer on a tin(IV) oxide electrode, and the diaphorase electrode thus obtained responded to NADH amperometrically in the presence of ferricyanide or 2,6-dichloroindophenol as the electron mediator. The response was one to two orders of magnitude larger than that of a bare electrode. Further derivatization of the diaphorase electrode with a dehydrogenase (glucose, lactate or alcohol dehydrogenase), which reduces NAD to NADH by reaction with the substrate, yielded dehydrogenase/diaphorase heterobilayer-modified electrodes. These electrodes functioned as sensors for the respective substrate with NAD and ferricyanide as the mediators. Each bilayer electrode responded to the substrate only in the presence of added NAD; this provides evidence for the essential contribution of diaphorase to the sensor performance. As much as 60 to 80% of the electron mediator reduced by the enzymatic reaction was utilized in the amperometric response.     

A novel cartridge for nucleic acid extraction,amplification and detection of infectious disease pathogens with the help of magnetic nanoparticles

Nucleic acid detection (NAD) based on real-time polymerase chain reaction (real-time PCR) is gold standard for infectious disease detection. Magnetic nanoparticles (MNPs) are widely used for nucleic acid extraction (NAE) because of their excellent properties. Microfluidic technology makes automated NAD possible. However, most of the NAD microfluidic chips are too complex to be applied to point-of-care (POC) testing. In this paper, a simple-structure cartridge was developed for POC detection of infectious diseases. This self-contained cartridge can be divided into a magnetic-controlled NAE part, a valve-piston combined fluidic control part and a PCR chip, which is able to extract nucleic acid from up to 500 µL of liquid samples by MNPs and finish the detection process from “sample in” to “answer out” automatically. Performance tests of the cartridges show that it met the demands of automated NAD. Results of on-cartridge detection of hepatitis B virus (HBV) demonstrated that this system has good uniformity and no cross-contamination between different cartridges, and the limit of detection (LOD) of this system for HBV in serum is 50 IU/mL. Multiplex detections of severe acute respiratory syndrome coronaviruses 2 (SARS-CoV-2) with a concentration of 500 copies/mL were carried out on the system and 100% positive detection rate was achieved.     

Photochemical Production of NADH Using Cobaloxime Catalysts and Visible-Light Energy

In this study, a visible-light-driven photocatalytic system for the generation of dihydronicotinamide adenine dinucleotide (NADH) from aqueous protons was examined using cobaloxime as a catalyst, eosin as a photosensitizer, and triethanolamine as a sacrificial electron donor. Irradiation of a reaction solution containing cobaloxime, eosin, and triethanolamine (TEOA) converted NAD(+) to NADH with a yield of 36% in a phosphate buffer. The reaction rates for the production of NADH were dependent on the concentrations of the catalyst, NAD(+), and TEOA. Introduction of an electron-donating or -withdrawing substituent in the para position of the pyridine changed the rate constant and affected the conversion efficiency. The rates obtained by the different substituents were linearly correlated with the Hammett coefficients of the introduced substituents. Last, reduction of CO(2) was carried out in the presence of formate dehydrogenase using NADH photochemically generated using the cobaloxime/eosin/TEOA system.     

Simultaneous measurement of NAD metabolome in aged mice tissue using liquid chromatography tandem‐mass spectrometry

Nicotinamide adenine dinucleotide (NAD) is a major co‐factor that mediates multiple biological processes including redox reaction and gene expression. Recently, NAD metabolism has received considerable attention because administration of NAD precursors exhibited beneficial effects against aging‐related metabolic disorders in animals. Although numerous studies have reported that NAD levels decline with aging in multiple animal tissues, the pathway and kinetics of NAD metabolism in aged organs are not completely understood. To determine the NAD metabolism upon aging, we developed targeted metabolomics based on an LC/MS/MS system. Our method is simple and applicable to crude biological samples, including culture cells and animal tissues. Unlike a conventional enzymatic cycling assay, our approach can determine NAD and NADH (reduced form of NAD) by performing a single sample preparation. Further, we validated our method using biological samples and investigated the alteration of the NAD metabolome during aging. Consistent with previous reports, the NAD levels in the liver and skeletal muscle decreased with aging. Further, we detected a significant increase in nicotinamide mononucleotide and nicotinamide riboside in the kidney upon aging. The LC/MS/MS‐based NAD metabolomics that we have developed is extensively applicable to biomedical studies, and the results will present innovative ideas for the aging studies, especially for that of NAD metabolism.     

Polysiloxane-supported NAD(P)H model 1-benzyl-1,4-dihydronicotinamide: synthesis and application in the reduction of activated olefins

A new polysiloxane-supported NAD(P)H model, 1-benzyl-1,4-dihydronicotinamide, was designed and synthesized, which can efficiently reduce many activated olefins under mild conditions. The most advantageous features of this new polysiloxane-supported reductant are (i) easy workup and separation of the reaction products and (ii) good potential for recycling use of the reductant, which makes this new polysiloxane-supported NAD(P)H model a promising alternative both in research laboratories and in industrial processes.     

l- and d-Lactate assay in real milk samples with immobilized enzyme reactors and graphite electrode

A sensitive flow system for the determination of l- and d-lactate in milk samples is described. l- and d-Lactate dehydrogenase, LDH, were immobilized on aminopropyl-controlled pore glass beads. l- and d-Lactate are oxidized to pyruvate in the presence of NAD(+) and NADH is produced. The electrochemical determination of NADH allows the measurement of the substrate involved in the reaction. We used a graphite-based anode sensor without any mediator at +500 mV vs. Ag/AgCl. The analytes were measured, in standard solutions, in the concentration range from 1 x 10(-6) to 4 x 10(-4)M using 1 mM NAD(+) concentration and 0.1M Tris buffer pH 9. Experiments with real milk samples showed large values of currents probably due to electroactive substances usually contained in milk. To eliminate interfering compounds a microdialysis probe coupled with a pre-oxidizing cell was used. This method of pre-treatment removes the interfering substances, but leaves the analytes under study unaffected. The procedure allows the determination of l- and d-lactate in milk samples in the concentration range from 1 x 10(-5) to 5 x 10(-4)M. The assay was applied to monitor continuously the bacterial fermentation of Staphylococcus aureus in UHT milk as an example of possible contamination detection in the manufacturing process.     

Oxidation Mechanisms of NAD(P)H Model Hantzsch 1,4-Dihydropyridines by RSNO

The important roles of nitric oxide (NO) in adjusting many physiological functions in life processes have attract ed considerable attention of many researchers over the past twenty years.[1] S-Nitrosothiols (henceforth called RSNOs) have been detected in vivo, and they are currently believed to be responsible for storing and transporting NO.[2] NAD(P)H is a typical redox coenzyme which plays an important role in NO synthesis and transfer from RSNOs in vivo. So it is interesting to investigate the reaction of RSNOs and NAD(P)H. In previous paper,[3] Professor Wu reported the reaction of GSNO with Hantzsch esters. In this paper our focus is on the kinetics of the reac tion of 4-substitued Hantzsch esters with Ph3CSNO (Eq. 1).     

NAD类似物吸附电极的循环伏安研究

光合作用中主要的氧化还原辅酶是ＮＡＤＰ ／ＮＡＤＰＨ ,呼吸作用中主要的氧化还原辅酶是ＮＡＤ ／ＮＡＤＨ．研究这两个辅酶 ,对于更好地了解生命现象并且模仿生物体设计高效清洁的能源具有重要意义．这两个辅酶的活性基团都是吡啶氮上烃基取代的烟酰胺环．为了避开ＮＡＤ分子本身复杂的化学结构 ,人们设计了许多简单分子来作为ＮＡＤ的类似物．有代表性的ＮＡＤ类似物有甲基烟酰胺［１］,苄基烟酰胺［２］等．但人们在研究中发现 ,在ＮＡＤ类似物的还原过程中 ,存在着如下的一个自由基的二聚反应 :而在生物体中 ,由于每个氧化还原酶中…