A Surface Coordination Network Based on Copper Adatom Trimers

Surface coordination networks formed by co‐adsorption of metal atoms and organic ligands have interesting properties, for example regarding catalysis and data storage. Surface coordination networks studied to date have typically been based on single metal atom centers. The formation of a novel surface coordination network is now demonstrated that is based on network nodes in the form of clusters consisting of three Cu adatoms. The network forms by deposition of tetrahydroxybenzene (THB) on Cu(111) under UHV conditions. As shown from a combination of scanning tunneling microscopy, X‐ray photoelectron spectroscopy, and density functional theory calculations, all four hydroxy groups of THB dehydrogenate upon thermal activation at 440 K. This highly reactive ligand binds to Cu adatom trimers, which are resolved by high‐resolution STM. The network creates an ordered array of mono‐dispersed metal clusters constituting a two‐dimensional analogue of metal–organic frameworks.     

Formation of one-dimensional C60 rows on TiO2(110)-1 x 2-cross-link structure and their local polymerization

Adsorption and growth of a C(60) monolayer on a TiO(2)(110)-1 x 2-cross-link structure were investigated by scanning tunneling microscopy (STM). Single C(60) molecules were preferentially anchored at the cross-link site due to interaction with undercoordinated Ti cations, and C(60) rows grew along the troughs between the 1 x 2-added rows. The C(60) monolayer structure is characterized by closely packed (r(C(60)-C(60)) = 1.0 nm) C(60) rows that are paired with every second added row (separation of paired rows is 1.1 nm). By applying a high negative bias voltage (-3.5 V) to an STM tip on the C(60) monolayer, C(60) oligomers were formed accompanied with the contraction of C(60)-C(60) distance along the C(60) row and bright contrast in the STM image.     

On‐Surface Metalation and 2D Self‐Assembly of Pyrphyrin Molecules Into Metal‐Coordinated Networks on Cu(111)

The metalation of the tetradentate molecule pyrphyrin by copper substrate atoms on a Cu(111) surface is studied. Pyrphyrin, in contrast to porphyrin, consists of four fused pyridine groups instead of pyrrol groups. Using thermal desorption spectroscopy (TDS ) and N 1s X‐ray photoelectron spectroscopy (XPS ), we show that metalation of the monolayer of pyrphyrin with Cu atoms from the Cu(111) surface occurs at 377 K. The formation of an extended two‐dimensional (2D) network is observed with scanning tunneling microscopy (STM ). A honeycomb‐like lattice of metalated pyrphyrin molecules is formed by intermolecular connection via the two cyano groups at the periphery of pyrphyrin as well as Cu adatoms. Dehydrogenation at the periphery of the molecule is observed during annealing at 520 K. The surface‐adsorbed metal‐pyrphyrin has the potential to serve as a molecular catalyst.     

Chlorine adsorption on Au(111): chlorine overlayer or surface chloride?

We report the first scanning tunneling microscope (STM) investigation, combined with density functional theory calculations, to resolve controversy regarding the bonding and structure of chlorine adsorbed on Au(111). STM experiments are carried out at 120 K to overcome instability caused by mobile species upon chlorine adsorption at room temperature. Chlorine adsorption initially lifts the herringbone reconstruction. At low coverages (<0.33 ML), chlorine binds to the top of Au(111)-(1 x 1) surface and leads to formation of an overlayer with (square root(3) x square root(3))R30 degree structure at 0.33 ML. At higher coverages, packing chlorine into an overlayer structure is no longer favored. Gold atoms incorporate into a complex superlattice of a Au-Cl surface compound.     

Single‐Molecule Study of a Plasmon‐Induced Reaction for a Strongly Chemisorbed Molecule

Chemical reactions induced by plasmons achieve effective solar‐to‐chemical energy conversion. However, the mechanism of these reactions, which generate a strong electric field, hot carriers, and heat through the excitation and decay processes, is still controversial. In addition, it is not fully understood which factor governs the mechanism. To obtain mechanistic knowledge, we investigated the plasmon‐induced dissociation of a single‐molecule strongly chemisorbed on a metal surface, two O₂ species chemisorbed on Ag(110) with different orientations and electronic structures, using a scanning tunneling microscope (STM) combined with light irradiation at 5 K. A combination of quantitative analysis by the STM and density functional theory calculations revealed that the hot carriers are transferred to the antibonding (π*) orbitals of O₂ strongly hybridized with the metal states and that the dominant pathway and reaction yield are determined by the electronic structures formed by the molecule–metal chemical interaction.     

Rastertunnelmikroskopie an chiralen Molekülen: Nanochemie

The imaging and manipulation capabilities of the scanning tunnelling microscope (STM) render possible a novel nanoscale chemistry based on experiments with single molecules. Herein, we address several aspects of a nanoscale stereochemistry using the STM. As an example, we investigate 1‐nitronaphthalene on Au(111). 1‐Nitronaphthalene becomes chiral upon planar adsorption on the metal surface. High‐resolution STM images reflect the asymmetric electronic structure of the molecules and allow for the determination of the absolute configuration of any individual molecule within complex molecular structures. At medium coverage, spontaneous breaking of the chiral symmetry results in the formation of homochiral conglomerates, while at high coverage racemic structures prevail. Finally, the tip of the STM is used to separate “supramolecule‐by‐supramolecule” a racemic mixture of chiral 1‐nitronaphthalene aggregates into the enantiopure compounds.     

Comparing Ullmann Coupling on Noble Metal Surfaces: On‐Surface Polymerization of 1,3,6,8‐Tetrabromopyrene on Cu(111) and Au(111)

The on‐surface polymerization of 1,3,6,8‐tetrabromopyrene (Br₄Py) on Cu(111) and Au(111) surfaces under ultrahigh vacuum conditions was investigated by a combination of scanning tunneling microscopy (STM), X‐ray photoelectron spectroscopy (XPS) and density functional theory (DFT) calculations. Deposition of Br₄Py on Cu(111) held at 300 K resulted in a spontaneous debromination reaction, generating the formation of a branched coordination polymer network stabilized by C?Cu?C bonds. After annealing at 473 K, the C?Cu?C bonds were converted to covalent C?C bonds, leading to the formation of a covalently linked molecular network of short oligomers. In contrast, highly ordered self‐assembled two‐dimensional (2D) patterns stabilized by both Br?Br halogen and Br?H hydrogen bonds were observed upon deposition of Br₄Py on Au(111) held at 300 K. Subsequent annealing of the sample at 473 K led to a dissociation of the C?Br bonds and the formation of disordered metal‐coordinated molecular networks. Further annealing at 573 K resulted in the formation of covalently linked disordered networks. Importantly, we found that the chosen substrate not only plays an important role as catalyst for the Ullmann reaction, but also influences the formation of different types of intermolecular bonds and thus, determines the final polymer network morphology. DFT calculations further support our experimental findings obtained by STM and XPS and add complementary information on the reaction pathway of Br₄Py on the different substrates.     

Examination of the Effect of the Annealing Cation on Higher Order Structures Containing Guanine or Isoguanine Repeats

Isoguanine (2‐oxo‐6‐amino‐guanine), a natural but non‐standard base, exhibits unique self‐association properties compared to its isomer, guanine, and results in formation of different higher order DNA structures. In this work, the higher order structures formed by oligonucleotides containing guanine repeats or isoguanine repeats after annealing in solutions containing various cations are evaluated by electrospray ionization mass spectrometry (ESI‐MS) and circular dichroism (CD) spectroscopy. The guanine‐containing strand (G9) consistently formed quadruplexes upon annealing, whereas the isoguanine strand (Ig9) formed both pentaplexes and quadruplexes depending on the annealing cation. Quadruplex formation with G9 showed some dependence on the identity of the cation present during annealing with high relative quadruplex formation detected with six of ten cations. Analogous annealing experiments with Ig9 resulted in complex formation with all ten cations, and the majority of the resulting complexes were pentaplexes. CD results indicated most of the original complexes survived the desalting process necessary for ESI‐MS analysis. In addition, several complexes, especially the pentaplexes, were found to be capable of cation exchange with ammonium ions. Ab initio calculations were conducted for isoguanine tetrads and pentads coordinated with all ten cations to predict the most energetically stable structures of the complexes in the gas phase. The observed preference of forming quadruplexes versus pentaplexes as a function of the coordinated cation can be interpreted by the calculated reaction energies of both the tetrads and pentads in combination with the distortion energies of tetrads.     

Tailoring Large Pores of Porphyrin Networks on Ag(111) by Metal–Organic Coordination

The engineering of nanoarchitectures to achieve tailored properties relevant for macroscopic devices is a key motivation of organometallic surface science. To this end, understanding the role of molecular functionalities in structure formation and adatom coordination is of great importance. In this study, the differences in formation of Cu‐mediated metal–organic coordination networks based on two pyridyl‐ and cyano‐bearing free‐base porphyrins on Ag(111) are elucidated by use of low‐temperature scanning tunneling microscopy (STM). Distinct coordination networks evolve via different pathways upon codeposition of Cu adatoms. The cyano‐terminated module directly forms 2D porous networks featuring fourfold‐coordinated Cu nodes. By contrast, the pyridyl species engage in twofold coordination with Cu and a fully reticulated 2D network featuring a pore size exceeding 3 nm² only evolves via an intermediate structure based on 1D coordination chains. The STM data and complementary Monte Carlo simulations reveal that these distinct network architectures originate from spatial constraints at the coordination centers. Cu adatoms are also shown to form two‐ and fourfold monoatomic coordination nodes with monotopic nitrogen‐terminated linkers on the very same metal substrate—a versatility that is not achieved by other 3d transition metal centers but consistent with 3D coordination chemistry. This study discloses how specific molecular functionalities can be applied to tailor coordination architectures and highlights the potential of Cu as coordination center in such low‐dimensional structures on surfaces.     

Solventless Formation of G‐Quartet Complexes Based on Alkali and Alkaline Earth Salts on Au(111)

Template cations have been extensively employed in the formation, stabilization and regulation of structural polymorphism of G‐quadruplex structures in vitro. However, the direct addition of salts onto solid surfaces, especially under ultra‐high‐vacuum (UHV) conditions, to explore the feasibility and universality of the formation of G‐quartet complexes in a solventless environment has not been reported. By combining UHV‐STM imaging and DFT calculations, we have shown that three different G‐quartet‐M (M: Na/K/Ca) complexes can be obtained on Au(111) using alkali and alkaline earth salts as reactants. We have also identified the driving forces (intra‐quartet hydrogen bonding and electrostatic ionic bonding) for the formation of these complexes and quantified the interactions involved. Our results demonstrate a novel route to fabricate G‐quartet‐related complexes on solid surfaces, providing an alternative feasible way to bring metal elements to surfaces for constructing metal–organic systems.     

Potassium di­cyano­argentate(I) 1,4,7,10,13,16‐hexaoxa­cyclo­octadecane

The crystal structure of the title compound, K[Ag(CN)₂]·C₁₂H₂₄O₆, conventionally denoted K(18‐crown‐6)Ag(CN)₂, where 18‐crown‐6 is 1,4,7,10,13,16‐hexa­oxa­cyclo­octa­decane, is characterized by closely packed linear chains formed by the coordination of the nitrile N atoms of the [Ag(CN)₂]⁻ anions to the K⁺ cations. The K atoms lie on centers of inversion and are additionally bound to the six O atoms of the crown ether.     

A study of the redox properties of MoOx/SiO2

A sample of MoOx/SiO2, in which all of the Mo cations are present as isolated mono-oxo molybdate moieties, was prepared and investigated to understand the redox chemistry of such molybdate species and their ability to exchange oxygen with O2 and H2O. Raman spectroscopy was used to monitor the exchange of 18O for 16O in the Mo=O bond of isolated molybdate species, whereas mass spectrometry was used to follow the isotopic composition of the gaseous species, i.e., O2 and H2O. Reduction in H2 at 920 K results in the loss of one O atom per Mo atom, and consistent with this, all of the Mo(VI) cations are reduced to Mo(IV) cations. Raman spectroscopy shows that virtually all Mo=O bonds of the original molybdate species are lost upon reduction. While reoxidation of Mo(IV) cations by O2 is quantitative, studies using 18O2 reveal that only a small part of the newly formed Mo=O bonds are 18O labeled, and that the balance are 16O labeled, indicating that O-atom exchange between the support, SiO2, and the supported MoOx species occurs during reoxidation. Rapid exchange of O atoms was observed upon exposure of both bare SiO2 and MoOx/SiO2 to H2(18)O at 920 K, and the presence of MoOx species was found to enhance the rate of exchange. By contrast, very slow exchange of O atoms was observed when the oxidized catalyst was exposed to 18O2 at 920 K. In situ observations of the catalyst during exposure to a mixture of H2 and 18O2 at 920 K showed that all of the Mo cations remained in the VI oxidation state and that O atom exchange occurred at a rate comparable to that observed upon exposure to H2(18)O. The results of this investigation suggest that reoxidation of Mo(IV) cations following H2 reduction involves the formation of a Mo-peroxide species and subsequent O atom migration from such a species to the SiO2 support. It is proposed that the steady-state oxidation of H2 also involves the formation of Mo-peroxide species by interaction of O2 with a small number of Mo(IV) centers. The Mo-peroxide species are then rapidly reduced by H2 to form H2O and a Mo=O bond. The rapid exchange of O atoms between the gas phase and the catalyst observed during steady-state oxidation of H2 is attributed to interactions of the product H2O with the catalyst, rather than to O atom migration originating from the Mo-peroxide species formed on the catalyst surface.     

Island morphology statistics and growth mechanism for oxidation of the Al(111) surface with thermal O2 and NO

Scanning tunneling microscopy (STM) was employed to study the mechanism for the oxidation of Al(111) with thermal O2 and NO in the 20%-40% monolayer coverage regime. Experiments show that the islands formed upon exposure to thermal O2 and NO have dramatically different shapes, which are ultimately dictated by the dynamics of the gas surface interaction. The circumference-to-area ratio and other island morphology statistics are used to quantify the average difference in the two island types. Ultrahigh-vacuum STM was employed to make the following observations: (1) Oxygen islands on the Al(111) surface, formed upon exposure to thermal oxygen, are elongated and noncompact. (2) Mixed O/N islands on the Al(111) surface, formed upon exposure to thermal nitric oxide (NO), are round and compact. (3) STM movies acquired during thermal O2 exposure indicate that a complex mechanism involving chemisorption initiated rearrangement of preexisting oxygen islands leads to the asymmetric and elongated island shapes. The overall mechanism for the oxidation of the Al(111) surface can be summarized in three regimes. Low coverage is dominated by widely isolated small oxygen features (<3 O atoms) where normal dissociative chemisorption and oxygen abstraction mechanisms are present. At 20%-40% monolayer coverage, additional oxygen chemisorption induces rearrangement of preexisting islands to form free-energy minimum island shapes. At greater than approximately 40% monolayer coverage, the apparent surface oxygen coverage asymptotes corresponding to the conversion of the 2D islands to 3D Al2O3 surface crystallites. The rearrangement of oxygen islands on the surface to form the observed islands indicates that there is a short-range oxygen-oxygen attractive potential and a long-range oxygen-oxygen repulsive potential.     

Control of the Intermolecular Coupling of Dibromotetracene on Cu(110) by the Sequential Activation of CBr and CH Bonds

Dibromotetracene molecules are deposited on the Cu(110) surface at room temperature. The complex evolution of this system has been monitored at different temperatures (i.e., 298, 523, 673, and 723 K) by means of a variety of complementary techniques that range from STM and temperature‐programmed desorption (TPD) to high‐resolution X‐ray spectroscopy (XPS) and near‐edge X‐ray absorption fine structure spectroscopy (NEXAFS). State‐of‐the‐art density‐functional calculations were used to determine the chemical processes that take place on the surface. After deposition at room temperature, the organic molecules are transformed into organometallic monomers through debromination and carbon‐radical binding to copper adatoms. Organometallic dimers, trimers, or small oligomers, which present copper‐bridged molecules, are formed by increasing the temperature. Surprisingly, further heating to 673 K causes the formation of elongated chains along the Cu(110) close‐packed rows as a consequence of radical‐site migration to the thermodynamically more stable molecule heads. Finally, massive dehydrogenation occurs at the highest temperature followed by ring condensation to nanographenic patches. This study is a paradigmatic example of how intermolecular coupling can be modulated by the stepwise control of a simple parameter, such as temperature, through a sequence of domino reactions.     

Systematic Dielectric and NMR Study of the Ionic Liquid 1‐Alkyl‐3‐Methyl Imidazolium

The dynamic behaviors of ionic liquid samples consisting of a series of 1‐alkyl‐3‐methylimidazolium cations and various counteranionic species are investigated systematically over a wide frequency range from 1 MHz to 20 GHz at room temperature using dielectric relaxation (DR) and nuclear magnetic resonance (NMR) spectroscopies. DR spectra for the ionic liquids are reasonably deconvoluted into two or three relaxation modes. The slowest relaxation times are strongly dependent upon sample viscosity and cation size, whereas the relaxation times of other modes are almost independent of these factors. We attribute the two slower relaxation modes to the rotational relaxation modes of the dipolar cations because the correlation times of the cations evaluated using longitudinal relaxation time (T₁ ¹³C NMR) measurements corresponded to the dielectric relaxation times. On the other hand, the fastest relaxation mode is presumably related to the inter‐ion motions of ion‐pairs formed between cationic and anionic species. In the case of the ionic liquid bis(trifluoromethanesulfonyl)imide, the system shows marked dielectric relaxation behavior due to rotational motion of dipolar anionic species in addition to the relaxation modes attributed to the dipolar cations.     

Metal-molecule-metal junctions in Langmuir-Blodgett films using a new linker: trimethylsilane

Herein trimethylsilane (TMS) is demonstrated to be an efficient binding group suitable for construction of metal-molecule-metal (M-mol-M') junctions, in which one of the metal contacts is an atomically flat gold surface and the other a scanning tunnelling microscopy (STM) tip. The molecular component of the M-mol-M' devices is an oligomeric phenylene ethynylene (OPE) derivative Me(3)Si C≡C{C(6)H(4)C≡C}(2)C(6)H(4)NH(2), featuring both Me(3)SiC≡C and NH(2) metal contacting groups. This compound can be assembled into Langmuir-Blodgett (LB) films on Au--substrates by surface binding through the amine groups. Alternatively, low coverage (sub-monolayer) films are formed by adsorption from solution. In the case of condensed monolayers top electrical contacts are formed to STM tips through the TMS end group. In low coverage films, single molecular bridges can be formed between the gold surface and a gold STM tip. The similarity in the I-V response of a one-layer LB film and the single molecule conductance experiments reveals several points of critical importance to the design of molecular components for use in the construction of M-mol-M' junctions. Firstly, the presence of neighbouring π systems does not have a significant effect on the conductance of the M-mol-M' junction. Secondly, in the STM configuration, intermolecular electron hopping does not significantly enhance the junction transport characteristics. Thirdly, the symmetric behaviour of the I-V curves obtained, despite the different metal-molecule contacts, indicates that the molecule is simply an amphiphilic electron-donating wire and not a molecular diode with strong rectifying characteristics. Finally, the conductance values obtained from the amine/TMS-contacted OPE described here are of the same order of magnitude as thiol anchored OPEs, making them attractive alternatives to the more conventionally used thiol-contacting chemistry for OPE molecular wires.     

Ground state of the Si(0 0 1) surface revisited—is seeing believing?

The stable structure of clean Si(0 0 1) surface around 100 K is the c(4 × 2) arrangement constructed by buckled dimers. This structure was widely accepted as the ground state in 1990’s. The view was challenged at the beginning of 2000’s by the observations of a p(2 × 1) structure below 20 K with scanning tunneling microscopy (STM). Recent experimental studies confirm that the dimer is buckled below 30 K. Large tip–surface interaction, and/or tunneling current induced dynamical effect are now experimentally evident in the STM images at low temperatures. Moreover, a current induced structure transformation is discovered below 40 K even in the study by low energy electron diffraction. Dynamical electronic and vibrational effects are theoretically studied for accounting the observation of a p(2 × 1) structure below 20 K.     

Radical cations from dicyclopropylidenemethane and its octamethyl derivative

The radical cations of dicyclopropylidenemethane (2) and its octamethyl derivative (2-Me8) are prone to rearrangements into those of (2-methylallylidene)cyclopropane (2a) and its octamethyl derivative (2a-Me8), respectively, by opening one three-membered ring. In contrast to the radical cations of bicyclopropylidene (1) and its octamethyl derivative (1-Me8), 2*+ and 2-Me8*+ are stable to opening of the second ring, because in this case the resulting species would be a non-Kekulé hydrocarbon with a quartet ground state. Similarly to 1, octamethyl substitution in 2 promotes the tendency to rearrangement. Thus, ESR and ENDOR studies indicate that the primary radical cation 2*+, which is formed upon gamma-irradiation of 2 in a CFCl3 matrix at 77 K, does not rearrange up to 150 K. On the other hand, when 2-Me8 is treated in the same way, only the rearranged radical cation 2a-Me8*+ can be observed and characterized by its ESR and ENDOR spectra. Nevertheless, the existence of the two "missing" species, 2a*+ and 2-Me8*+, is revealed by other methods. According to UV and IR studies, X irradiation of 2 in an Ar matrix leads directly to the ring-opened radical cation 2a*+. Moreover, magnetic field effects on the decay of fluorescence, which appears upon recombination of the radical anion of p-terphenyl with a radical cation generated from 2-Me8 in liquid octane, strongly suggest that 2-Me8*+ (and not 2a-Me8*+) is formed initially. From the temperature dependence of the decay, the activation energy of the ring-opening process 2-Me8*+ --> 2a-Me8*+ is estimated. The radical cations 2a*+ and 2a-Me8*+ are formally distonic with the spin residing in the allylic moiety and the charge accommodated on the central carbon atom of the allene pi-system. The intact cyclopropylidenemethylidene moiety assumes a "bisected" conformation, thus favoring an optimal interaction with the positively charged center on the pi-system.     

Ionic hydrogen bonds controlling two-dimensional supramolecular systems at a metal surface

Hydrogen-bond formation between ionic adsorbates on an Ag(111) surface under ultrahigh vacuum was studied by scanning tunneling microscopy/spectroscopy (STM/STS), X-ray photoelectron spectroscopy (XPS), near-edge X-ray absorption fine structure (NEXAFS), and molecular dynamics calculations. The adsorbate, 1,3,5-benzenetricarboxylic acid (trimesic acid, TMA), self-assembles at low temperatures (250-300 K) into the known open honeycomb motif through neutral hydrogen bonds formed between carboxyl groups, whereas annealing at 420 K leads to a densely packed quartet structure consisting of flat-lying molecules with one deprotonated carboxyl group per molecule. The resulting charged carboxylate groups form intermolecular ionic hydrogen bonds with enhanced strength compared to the neutral hydrogen bonds; this represents an alternative supramolecular bonding motif in 2D supramolecular organization.     

Blue or green glowing crystals of the cation [Au{C(NHMe)2}2]+. Structural effects of anions, hydrogen bonding, and solvate molecules on the luminescence of a two-coordinate gold(I) carbene complex

Depending upon the crystallization conditions, [Au{C(NHMe) 2} 2](AsF 6) forms colorless crystals that display a blue or green luminescence. The difference involves the type of solvate molecule that is incorporated into the crystal and the structure of the chains of cations that are formed upon crystallization. The crystallographically determined structures of blue-glowing [Au{C(NHMe) 2} 2](AsF 6).0.5(benzene), blue-glowing [Au{C(NHMe) 2} 2](AsF 6).0.5(acetone), green-glowing [Au{C(NHMe) 2} 2](AsF 6).0.5(chlorobenzene), and blue-glowing, solvate-free [Au{C(NHMe) 2} 2](EF 6), E = P, As, Sb are reported. All pack with the cations forming extended columns, which may be linear or bent, but all show significant aurophilic interactions. The blue-glowing crystals have ordered stacks of cations with some variation in structural arrangement whereas the green-glowing crystals have disorder in their stacking pattern. Although there is extensive hydrogen bonding between the cations and anions in all structures, in the solvated crystals, the solvate molecules occupy channels but make no hydrogen-bonded contacts. The emission spectra of these new salts taken at 298 and 77 K are reported.