Selective reactivities and accessibilities of the hydroxyl groups in cotton cellulose based on equilibrium data from a reversible chemical reaction

In order to determine the relative equilibrium constants for reactions of the hydroxyl groups at C₂, C₃, and C₆ of the D-glucopyranosyl units, methyl vinyl sulfone was reacted with cellulose dissolved in benzyltrimethylammonium hydroxide. The reaction was carried to constancy in distribution of substituents between the 2–0– and 6–0–positions. The distributions of substituents in the D-glucopyranosyl units were measured by gas-liquid chromatographic analysis of the products from hydrolysis of the modified cellulose. Relative equilibrium constants were then evaluated, assuming complete accessibility of all three types of hydroxyl groups of the cellulose in solution. For determination of the relative accessibilities of the individual types of hydroxyl groups in heterogeneous reactions of cotton cellulose with methyl vinyl sulfone, the reactions were carried to equilibrium distributions in media of various normalities of sodium hydroxide (i.e., media of various swelling strength). The distributions of substituents in the D-glucopyranosyl units were measured. From these values and the ratio of equilibrium constants, the relative accessibilities of the hydroxyl groups at C₂ versus those at C₆ were calculated. Apparent accessibilities of the hydroxyl groups at C₂ are approximately double those at C₆ when the reaction is carried out in 1N sodium hydroxide and about triple those at C₆ when the reaction is carried out in 0.5N sodium hydroxide.     

Effect of core substituents on the intramolecular exchange interaction in N,N′‐dioxy‐2,6‐diazaadamantane biradical: DFT studies

Density‐functional theory calculations of a series of organic biradicals on the basis of the N,N′‐dioxy‐2,6‐diazaadamantane core with different substituents at carbon atoms adjacent to the nitroxyl groups have been performed by the UB3LYP/6‐311++G(2d,2p) method. Using the breaking symmetry approach, the values of the exchange interaction parameter, J, between the radical centers are calculated. It is shown that the intramolecular exchange interaction for the most part is ferromagnetic in nature, but the J parameter gradually decreases, changing its sign to antiferromagnetic interaction for the last substituent in the following sequence: CF₃(CH₃)COH > CH₂F(H)COH > CH₂OH > H > CBr₃ > CH₂F > CCl₃ > CF₃ > CH₂Br > CH₂Cl > CH₃ > C₂H₅ > C₃H₇ > i‐C₄H₉ > F > Br > OCH₃ > Cl > CH₂C₆H₅. The calculations at the UHSEH1PBE/6‐311++G(2d,2p) level with the most of substituents show nearly the same variation sequence for the J parameter. It is concluded that spin polarization effects in the diazaadamantane cage and a direct through‐space antiferromagnetic exchange interaction between the nitroxyl groups are the main mechanisms contributing to the exchange interaction parameter value in the studied series of compounds. The exchange coupling constant, J, depends on the electronic effects and geometry of the substituents, as well as on their specific interactions with the nitroxyl radical groups.     

New insight into the substituent effects on the hydrolytic deamination of saturated and unsaturated cytosine

Ab initio calculations were carried out to understand the effect of electron donating groups (EDG) and electron withdrawing groups (EWG) at the C5 position of cytosine (Cyt) and saturated cytosine (H₂Cyt) of the deamination reaction. Geometries of the reactants, transition states, intermediates, and products were fully optimized at the B3LYP/6-31G(d,p) level in the gas phase as this level of theory has been found to agree very well with G3 theories. Activation energies, enthalpies, and Gibbs energies of activation along with the thermodynamic properties (ΔE, ΔH, and ΔG) of each reaction were calculated. A plot of the Gibbs energies of activation (ΔG^‡) for C5 substituted Cyt and H₂Cyt against the Hammett σ-constants reveal a good linear relationship. In general, both EDG and EWG substituents at the C5 position in Cyt results in higher ΔG^‡ and lower σ values compared to those of H₂Cyt deamination reactions. C5 alkyl substituents ( H,  CH₃,  CH₂CH₃,  CH₂CH₂CH₃) increase ΔG^‡ values for Cyt, while the same substituents decrease ΔG^‡ values for H₂Cyt which is likely due to steric effects. However, the Hammett σ-constants were found to decrease at the C5 position of cytosine (Cyt) and saturated cytosine (H2Cyt) on the deamination reaction. Both ΔG^‡ and σ values decrease for the substituents Cl and Br in the Cyt reaction, while ΔG^‡ values increase and σ decrease in the H₂Cyt reaction. This may be due to high polarizability of bromine which results in a greater stabilization of the transition state in the case of bromine compared to chlorine. Regardless of the substituent at C5, the positive charge on C4 is greater in the TS compared to the reactant complex for both the Cyt and H₂Cyt. Moreover, as the charges on C4 in the TS increase compared to reactant, ΔG^‡ also increase for the C5 alkyl substituents ( H,  CH₃,  CH₂CH₃,  CH₂CH₂CH₃) in Cyt, while ΔG^‡ decrease in H₂Cyt. In addition, analysis of the frontier MO energies for the transition state structures shows that there is a correlation between the energy of the HOMO–LUMO gap and activation energies.     

First ionization potentials of amines and electronic effects in their radical cations

The possibility of application of linear free energy relationships for studying the effects of substituents on the first vertical ionization potentials of amines, I(n_N), was substantiated. The I(n_N) values depend on the inductive, resonance, and polarizability effects of substituents and are also affected by hyperconjugation. The _R ⁺ resonance parameters of substituents MR₃ (M = Si, Ge, Sn) and CH₂SiMe₃ bound to the N ^·+ radical cation center were calculated for the first time.     

Substitution effects on the molecular structures and the longitudinal molecular polarizabilities of all‐trans polyacetylene oligomers of increasing size

AM1 calculations have been performed on all‐trans polyacetylene (PA) oligomers with an increasing number of unit cells to study the effect of donor or acceptor groups capped at opposite ends of PA chains, substituents included in the monomers, substituents' number and position in the monomers, on the molecular structures, and the static longitudinal polarizabilities (α_L) and second‐order hyperpolarizabilities (γ_L). Substitution of CH₃, Cl, or F group at opposite ends of an oligomer results in an increase of α_L and γ_L, but the substitution effects on Δα_L(N) and Δγ_L(N) are very small. The asymptotic limit values are unaffected by the substitution. F substituent included in the monomer of an oligomer enhances the Δα_L(N) and Δγ_L(N) values, especially at large N, but including monomers with CH₃ or Cl substituents substantially reduces the Δα_L(N) and Δγ_L(N) values. We alter the number of F substituents included in the monomers of oligomers and find that including two F substituents in the monomer leads to the larger enhancement of Δγ_L(N). The effect of F substituents' position in the monomers of oligomers on Δα_L and Δγ_L is obvious. The results may be helpful for the design of new materials for applications in nonlinear optics, particularly in the area of poled polymer films. © 2001 John Wiley & Sons, Inc. Int J Quantum Chem, 2001     

Synthesis and characterization of N‐substituted hyperbranched polyureas

N,N′‐disubstituted hyperbranched polyureas with methyl, benzyl, and allyl substitutents were synthesized starting from AB₂ monomers based on 3,5‐diamino benzoic acid. Carbonyl azide approach, which generates isocyanate group in situ on thermal decomposition, was used for the protection of isocyanate functional groups. The N‐substituted hyperbranched polymers can be considered as the new class of internally functionalized hyperbranched polyureas wherein the substituent can function either as receptor or as a chemical entity for selective transformations as a tool to tailor the properties. The chain‐ends were also modified by attaching long chain aliphatic groups to fully realize the interior functionalization. This approach opens up a possible synthetic route wherein different functional substituents can be used to generate a library of internally functionalized hyperbranched polymers. All the hyperbranched polyureas were characterized by FTIR, ¹H‐NMR, DSC, TGA, and size exclusion chromatography. Degree of branching in these N,N′‐disubstituted hyperbranched polyureas, as calculated by ¹H‐NMR spectroscopy using model compounds, was found to be lower than the unsubstituted hyperbranched polyurea and is attributed to the lower reactivity of N‐substituted amines compared to that of unsubstituted amines. © 2004 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 42: 5134–5145, 2004     

A new group of potential antituberculotics: <Emphasis Type="Italic">N</Emphasis>-(2-pyridylmethyl)salicylamides and <Emphasis Type="Italic">N</Emphasis>-(3-pyridylmethyl)salicylamides

As a part of our systematic study of antimycobacterially active derivatives of salicylamides, a series of nineteen derivatives of N-(2-pyridylmethyl)salicylamides and N-(3-pyridylmethyl)salicylamides was synthesised. The compounds exhibited in vitro activity against Mycobacterium tuberculosis and M. avium. Their lipophilicity, R _M, was measured by thin layer chromatography on silica gel impregnated with trioctadecylsilane and the logarithm of the partition coefficient (octanol-water), logP, was calculated. Both the parameters of lipophilicity correlated. The quantitative relationship between the structure and antimycobacterial activity was calculated. Antimycobacterial activity increased with an increase in lipophilicity. The N-(2-pyridylmethyl)salicylamide derivatives were more active than the derivatives of isomeric N-(3-pyridylmethyl)salicylamides. The geometry of compounds was calculated and the calculation was verified by measuring the length of the hydrogen bond between hydroxyl and carbonyl groups on the salicylic moiety.     

Relationship between Electronic Charges at Nitrogen Atoms of Nitro Groups and Thermal Reactivity of Nitramines

Thermal reactivity of eleven nitramines has been examined by means of non-isothermal differential thermal analysis, and the data were analyzed according to the Kissinger method. The reactivity was expressed as the E _a R ⁻¹ slopes of the Kissinger relationship. Electronic charges, q ^N, at nitrogen atoms of the nitramine molecules were calculated by means of ab initio DFT B3LYP/6-31G** method. The relationships were confirmed between the slopes E _a R ⁻¹ and the q values for the nitro groups that are primarily split off. Conclusions are made in relation to the mechanism of initiation of polynitro compounds in general. This revised version was published online in July 2006 with corrections to the Cover Date.     

Ligand influence on the electrochemical behavior of some copper(II) thiosemicarbazone complexes

The redox properties of the title mono- and binuclear copper(II) chelates have been investigated by cyclic voltammetry in DMF at a working platinum electrode. The cathodic reduction and anodic oxidation of the investigated chelates produced the corresponding electrochemical Cu^I and Cu^IIIspecies stable only in the voltammetric time scale, The effects of substituents on E_1/2, redox properties and stability towards oxidation of the complexes were related to the electron-withdrawing or releasing ability of the substituents on the C=N¹[H, CH₃ or C₆H₅] and/or N⁴H [H, C₂H₅, C₆H₅ or pClC₆H₄] groups, The electron attracting substituents stabilize the Cu(II) complexes while electron-donating groups favor oxidation to Cu(III). Changes in the E_1/2 for the complexes due to remote substituent effects could be related to changes in basicity of N⁴H.Thus, variation in N⁴1-J has more influence on E_1/2 than changes in C=N¹. The correlation between E_1/2 of the complexes and pK_a of the ligands has been attributed to the spherical potential generated by the electron density of the donor atoms at the antibonding d orbitals.     

On the charge partitioning between c and z fragments formed after electron-capture induced dissociation of charge-tagged Lys-Lys and Ala-Lys dipeptide dications

Here we report on the charge partition between c and z fragments formed after femtosecond collisional electron-transfer from Cs atoms to charge-tagged peptide dications. Peptides chosen for study were Ala-Lys (AK) and Lys-Lys (KK) where one or both of the lysine ε-amino groups were trimethylated to provide one or two fixed charges. For peptides with only one charge tag, the other charge was obtained by protonation of an amino group. In some experiments the ammonium group was tagged by 18-crown-6-ether (CE). Since recombination energies decrease in the order: MeNH₃⁺>NMe₄⁺>MeNH₃⁺(CE)>NMe₄⁺(CE), it is possible to change the probability for the transferred electron to end up at either the N-terminal or the C-terminal residue by CE attachment. We find, however, that the individual recombination energies have little influence on the relative ratio between the yield of c and z ions as long as there are no mobile protons that can be transferred between the two fragments. Our results can be accounted for by the Utah-Washington model where the electron is captured into an amide π* orbital that weakens the N-C_α bond and causes its breakage, followed by proton, electron, or hydrogen transfer between the c and z fragments that stay together as an ion-molecule complex for some time. The data are also in accordance with the notion that an amide group competes with the charged groups for the electron. Electron capture by charged groups results in loss of small neutrals such as hydrogen and ammonia.     

Quantum-chemical interpretation of the effect of substitution in the benzene ring on the reactivity of monosubstituted benzenes

The HF/3-21G and HF/6-31G** methods were used to calculate the effective charges on the carbon and hydrogen atoms in the meta and para positions of the aromatic ring in monosubstituted benzenes. The calculated charges are compared with the Hammett constants of the substituents in the aromatic ring. Linear correlations were obtained between the atomic charges and the Hammett constants of the substituents. The resulting equations were shown to be useful for predicting and assessing the reactivity of aromatic compounds.     

Charge calculations in molecular mechanics. Part 8 Partial atomic charges from classical calculations

Summary The CHARGE2 programme, which involves the classical calculation of both the inductive and resonance contributions to the partial atomic charges in molecules is described, and the charges and electrostatic potentials obtained presented for some illustrative examples.In substituted methanes (CH₃X, CF₃X, CCl₃X) the effects of varying the electronegativity of the substituents and the - and -substituent contributions are clearly illustrated for a variety of substituent groups X.The problems involved in the inclusion of silicon into this scheme are detailed, together with the methods of overcoming them. The partial atomic charges ( and contributions) and electrostatic potentials for some silicon oxygen compounds are presented and discussed.The partial atomic charges from CHARGE2 for all the natural amino acids as their N-acetyl, N-methyl-amides are given and compared with those obtained from the AMBER and ECEPP/2 force fields. Considerable differences in these figures are observed, with the AMBER charges consistently much larger than those from the other two methods.The CHARGE2 partial atomic charges and electrostatic potentials for the four common nucleic acids, adenine, cytosine, guanine and thymine, are given and compared with those derived from other calculations. Again there is general similarity but also there are considerable differences, with those from the AMBER force field somewhat larger than the other methods.For previous parts in this series, see Refs. 1-7.     

Me‐BIPAM for the Synthesis of Optically Active 3‐Aryl‐3‐hydroxy‐2‐oxindoles by Ruthenium‐catalyzed Addition of Arylboronic Acids to Isatins

A chiral O‐linked C₂‐symmetric bidentate phosphoramidite (Me‐BIPAM) was found to be efficient for the ruthenium‐catalyzed addition of arylboronic acids to isatins. Asymmetric synthesis of 3‐aryl‐3‐hydroxy‐2‐oxindoles by 1,2‐addition of arylboronic acids to isatins was carried out in the presence of [RuCl₂(PPh₃)₃]/(R,R)‐Me‐BIPAM and KF, resulting in an enantioselectivity as high as 90 % ee. It was found that the reaction with N‐protected isatins proceeds with high yields and good enantioselectivities. The best protective groups on the nitrogen atom were different depending on the substituents on the aromatic ring. The use of a N‐benzyl group resulted in excellent enantioselectivities in many substrates compared with other groups.     

A New Class of Organosuperbases,N‐Alkyl‐ and N‐Aryl‐1,3‐dialkyl‐4,5‐dimethylimidazol‐2‐ylidene Amines: Synthesis,Structure, pKBH+ Measurements,and Properties

A series of stable organosuperbases, N‐alkyl‐ and N‐aryl‐1,3‐dialkyl‐4,5‐dimethylimidazol‐2‐ylidene amines, were efficiently synthesized from N,N′‐dialkylthioureas and 3‐hydroxy‐2‐butanone and their basicities were measured in acetonitrile. The derivatives with tert‐alkyl groups on the imino nitrogen were found to be more basic than the tBu P₁ (pyrr) phosphazene base in acetonitrile. The origin of the high basicity of these compounds is discussed. In acetonitrile and in the gas phase, the basicity of the alkylimino derivatives depends on the size of the substituent at the imino group, which influences the degree of aromatization of the imidazole ring, as measured by ¹³C NMR chemical shifts or by the calculated ΔNICS(1) aromaticity parameters, as well as on solvation effects. If a wider range of imino‐substituents, including electron‐acceptor substituents, is treated in the analysis then the influence of aromatization is less predominant and the gas‐phase basicity becomes more dependent on the field‐inductive effect, polarizability, and resonance effects of the substituent.     

Density functional studies of LiN and LiN+ (N = 2–30) clusters: Structure,binding and charge distribution

Density functional calculations using B3LYP/6‐311G method have been carried out for small to medium‐sized lithium clusters (Li_N, N = 2–30). The optimized geometries of neutral and singly charged clusters, their binding energies, ionization potential, electron affinity, chemical potential, softness, hardness, highest occupied molecular orbital and lowest unoccupied molecular orbital (HOMO–LUMO) gap, and static dipole polarizability have been investigated systematically. In addition, we study the distribution of partial charges in detail using natural population analysis (NPA) in small‐sized clusters (Li_N, N = 2–10), both neutral and cationic, and demonstrate the correlation between symmetry and charge. Uniform distribution of charges in cationic clusters confirms them to be energetically more favorable than the neutral counterparts. Whenever possible, results have been compared with available data. An excellent agreement in every case supports new results as reliable predictions. A careful study of optimized geometries shows that Li₉ is derivable from bulk Li structure, i.e., body centered cubic cell, and higher clusters have optimized shapes derived from this. Further, the turnover form two to three dimensional structure occurs at cluster size N = 6. The quantity α^1/3 (α = polarizability) per atom is found to be broadly proportional to softness (per atom) as well as inverse ionization potential (per atom). The present work forms a sound basis for further study of large‐sized clusters as well as other atomic clusters. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

1,2,4-Triazoles. V. Nuclear magnetic resonance study of N-Methyl derivatives of 1,2,4-triazoles

The chemical shifts of the N-methyl protons of a number of N-methylated-1,2,4-triazoles were studied. Substitution of methyl and methylthio groups in position 3 causes upfield shifts of the N-methyl signals, while substitution of α-pyridyl, γ-pyridyl, and phenyl groups causes downfield shifts. In 3,5-disubstituted 1,2,4-triazoles, substituents in positions 3 and 5 have additive effects on the chemical shifts of N-methyl groups, so that the chemical shifts of the N-methyl groups of such compounds can be calculated. In this way, it was possible to assign the peaks of mixtures of N-monomethylated derivatives obtained by methylation of 1,2,4-triazoles.     

Reactivity of polymer substituents. Aminolysis of p-nitrophenyl ester residues attached to various polymer backbones

Styrene, methyl acrylate, and N,N-dimethylacrylamide were copolymerized with small proportions of p-nitrophenyl acrylate or p-nitrophenyl esters of CH₂?CHCONH(CH₂)_nCOOH (n = 1,3,5). The aminolysis of these copolymers in dioxane and chlorobenzene solution was compared with the corresponding reaction of low molecular weight analogs. The ratio of the reactivity of the polymer substituent and its analog was found to be insensitive to the nature of the amine but strongly dependent on the nature of the polymer backbone. Poly(dimethylacrylamide) chains carrying active ester substituents were in some cases much more reactive than their analogs due to the activating effect of the dimethylamide groups. In the case of the p-nitrophenyl acrylate–styrene copolymer, the aminolysis exhibited a dispersion of the rate constant due to its sensitivity to stereoisomerism in the vicinity of the active ester, but no similar effects were observed with the other copolymers.     

Quantum-Chemical Study of the Electronic and Steric Structure of Vinyltetrazoles: II. 2-Vinyltetrazoles

The total Mulliken charges on the C and N atoms, populations of the S-trans-(N¹) conformers, and rotation barriers in the molecules of 2-vinyl-5-R-tetrazoles (R = H, CH₃, CH = CH₂, C₆H₅, CH₂Cl, CF₃) were calculated ab initio (HF/6-31G**, MP2/6-31G**). The results were compared with the ¹H and ¹³C NMR data for these compounds.     

Prediction of the properties and thermodynamics of formation for energetic nitrogen‐rich salts composed of triaminoguanidinium cation and 5‐nitroiminotetrazolate‐based anions

Density functional theory and volume‐based thermodynamics calculations were performed to study the effects of different substituents and linkages on the densities, heats of formation (HOFs), energetic properties, and thermodynamics of formation for a series of energetic nitrogen‐rich salts composed of triaminoguanidinium cation and 5‐nitroiminotetrazolate anions. The results show that the ? NO₂, ? NF₂, or ? N₃ group is an effective substituent for increasing the densities of the 5‐nitroiminotetrazolate salts, whereas the effects of the bridge groups on the density are coupled with those of the substituents. The substitution of the group ? NH₂, ? NO₂, ? NF₂, ? N₃, or the nitrogen bridge is helpful for increasing the HOFs of the salts. The calculated energetic properties indicate that the ? NO₂, ? NF₂, ? N₃, or ? N?N? group is an effective structural unit for improving the detonation performance for salts. The thermodynamics of formation of the salts show that all the salts may be synthesized easily by the proposed reactions. The structure‐property relationships provide basic information for the molecular design of novel high‐energy salts. © 2012 Wiley Periodicals, Inc.     

The structure of the anti‐aging agent J147 used for treating Alzheimer's disease

The molecular structure of the anti‐aging agent J147 [systematic name: (E)‐N‐(2,4‐dimethylphenyl)‐2,2,2‐trifluoro‐N′‐(3‐methoxybenzylidene)acetohydrazide], C₁₈H₁₇F₃N₂O₂, has been determined at 150 K. The crystal structure corresponds to the minimum‐energy conformation in the gas phase calculated by density functional theory (DFT). 15 other conformations have been calculated and compared with the minimum, denoted 1111 . NMR spectroscopic data have been obtained and compared with those from Gauge Independent Atomic Orbital (GIAO) calculations. DFT calculations allow the reduction of the 16 possible rotamers to the four most stable (i.e. 1111 , 1112 , 1121 and 1222 ); in addition, the calculated barriers connecting these minima are low enough to permit their interconversion. Comparison of the NMR spectroscopic results, both experimental and calculated, point to the 1121 isomer being present in chloroform solution.