Correlations and predictions of pKa values of fluorophenols and bromophenols using hydrogen-bonded complexes with ammonia

Density functional theory calculations have been preformed on a series of the hydrogen-bonded fluorophenol-ammonia and bromophenol-ammonia complexes. Intermolecular and intramolecular properties, particularly those related to hydrogen bonding, have been carefully analyzed. Several properties, such as the bond length and stretching frequency of the hydroxyl group, the hydrogen bond length and binding energy, are shown to be highly correlated with each other and are linearly correlated with known experimental pKa values of the halogenated phenols. The linear correlations have been used to predict the pKa values of all fluorophenols and bromophenols in the series. The predicted pKa values are shown to be consistent from different molecular properties and are in good agreement with available experimental values. This study suggests that calculated molecular properties of hydrogen-bonded complexes allow the effective and systematic prediction of pKa values for a large range of organic acids using the established linear correlations.     

溴代作用对竹红菌素分子性质影响的理论研究

用AM1方法对红菌素（包插甲素和乙素）与它们的溴代物进行了量子化学对比计算,得到了生成热,前线轨道能级及偶极矩等,讨论了溴代作用对竹红菌素分子性质的影响。     

A DFT Study on Intramolecular Hydrogen Bond in Substituted Catechols and Their Radicals

Density functional theory(DFT)at B3LYP/6-31G(d,p) level was employed to calculate intramolecular hydrogen bond enthalpies (H1HB),O-H charge differencces,O-H bond lengths and bond orders for various substituted catechols and their radicals generated after H-abstraction.It was found that although the charge difference between hydrogen-bonded H and O played a role in determining H1HB,H1HB was mainly governed by the hydrogen bond length.As the oxygen-centedred radiocal has great tendency to form a chemical bond with the H atom,hydrogen bond lengths in catechloic radicals are systematically shorter than those in catechlos,hence,the H1HB for the former are higher than those for the latter.     

Neutral and ionic hydrogen bonding in Schiff bases

Low-temperature, high-resolution X-ray studies of charge distributions in the three Schiff bases, the dianil of 2-hydroxy-5-methylisophthaldehyde, 3,5-dinitro-N-salicylidenoethylamine and 3-nitro-N-salicylidenocyclohexylamine, have been carried out. These structures exhibit interesting weak interactions, including two extreme cases of intramolecular hydrogen bonds that are ionic N(+)-H...O- and neutral O-H...N in nature. These two types of hydrogen bond reflect differences in geometrical parameters and electron density distribution. At the level of geometry, the neutral O-H...N hydrogen bond is accompanied by an increase in the length of the C(1)-O(1) bond, opening of the ipso-C(1) angle, elongation of the aromatic C-C bonds, shortening of the C(7)-N(2) bond and increased length of the C(1)-C(7) bond, relative to the ionic hydrogen bond type. According to the geometrical and critical point parameters, the neutral O-H...N hydrogen bond seems to be stronger than the ionic ones. There are also differences between charge density parameters of the aromatic rings consistent with the neutral hydrogen bond being stronger than the ionic ones, with a concomitant reduction in the aromaticity of the ring. Compounds with the ionic hydrogen bonds show a larger double-bond character in the C-O bond than appears in the compound containing a neutral hydrogen bond; this suggests that the electronic structure of the former pair of compounds includes a contribution from a zwitterionic canonical form. Furthermore, in the case of ionic hydrogen bonds, the corresponding interaction lines appear to be curved in the vicinity of the hydrogen atoms. In the 3-nitro-N-salicylidenocyclohexylamine crystal there exists, in addition to the intramolecular hydrogen bond, a pair of intermolecular O...H interactions in a centrosymmetric dimer unit.     

Theoretical study on the intramolecular hydrogen bond in chloro-substituted N,N-dimethylaminomethylphenols. I. Structural effects

Ab initio and density functional calculations are applied to study the influence of an increasing number of chlorine substituents on the properties of the intramolecular hydrogen bond in substituted Mannich bases. It is shown, that not only the acidity of the proton donor, which depends on the number of chlorine atoms at the aromatic ring, but also steric interactions modify the geometry of the hydrogen bond. Specific interactions of O–ClH–O hydrogen-bonding in some derivatives are estimated by calculations on related chlorophenols.     

卤代对苝醌类光敏剂光敏活性影响的量子化学研究

Taking hypomycin B（HMB）as the model compound,HF / 6-31G and TD-B3LYP / 6-31G methods have been employed to explore the effect of chlorine,bromine and iodine substitutions on molecular properties and photosensitization of perylenequinonoid photosensitizer（PQP）. It was found firstly that,the halogen substitutions lowered the EHOMO and ELUMO,and the ΔE. From chlorine,bromine to iodine substitutes,the EHOMO and ELUMO increased,while the corresponding ΔE decreased. Secondly,the halogen substitutions increased the molecular triplet-generating quantum yields and lowered the molecular lowest lying triplet energies,which resulted in the substitutes’similar 1O2 yields with their parent compounds. After halogen substitutions,the molecular adiabatic electron affinities increased,which made the substitutes possess lower O2· - -generating abilities than their parent compounds. Finally,the halogen substitutions lowered the intramolecular hydrogen bond energies,while enhancing the intramolecular proton transfer（IPT）barriers of cis isomers and lowering those of trans isomers on the ground state.     

Why Static O-H Bond Parameters Cannot Characterize the Free Radical Scavenging Activity of Phenolic Antioxidants: ab initio Study

Recently, selecting high efficient phenolic antioxidants with low toxicity was paid much attention1-4. Moreover, quantitative structure-activity relationships (QSAR) for phenolic antioxidants have been investigated to accelerate the selection process5-7. Hence, how to theoretically characterize the free radical scavenging activity of phenolic antioxidants is important and significant. Although the parameters characterizing O-H bond dissociation energy or enthalpy (BDE) correlate well with …     

Car-Parrinello molecular dynamics study of anharmonic systems: a Mannich base in solution

A Car-Parrinello molecular dynamics study was performed for 4,5-dimethyl-2-(N,N-dimethylaminomethyl)phenol, a Mannich base, to investigate the vibrational properties in solution of its intramolecular hydrogen bond. The dynamic behavior of this hydrogen-bonded system was investigated using an explicit solvent model. Addition of a nonpolar solvent permitted inclusion of delicate environmental effects on the strongly anharmonic system which was studied from first principles. Molecular dynamics and a posteriori quantization of the O-H motion were applied to reproduce the vibrational features of the O-H stretching mode. Consistent application of Car-Parrinello dynamics based on the density functional theory with subsequent solution of the vibrational Schr?dinger equation for the O-H stretching motion offers an effective method for strongly anharmonic systems, and this is supported by the comparison of the results with experimental spectra. As a further element of the intramolecular hydrogen bond study, the effects of deuteration were taken into account and a successful application of the O-H stretching mode quantization technique to the liquid phase is demonstrated. This provides a valuable computational methodology for investigations incorporating nuclear quantum effects in the liquid phase and enzyme active centers and can be used to investigate numerous systems that are not readily susceptible to experimental analysis.     

Exploring unusual antioxidant activity in a benzoic acid derivative: a proposed mechanism for citrinin

A mechanism is proposed for the unusual antioxidant activity in citrinin based on computed O-H bond dissociation enthalpies (BDE). These data suggest that citrinin itself is not the active species, but rather a pair of hydrated Michael addition products consisting of substituted 2,6-dihydroxy benzoic acids. These diastereomers act as radical scavengers via O-H bond dissociation with computed BDE's ranging from 78.9-80.9 kcal/mol for the active groups present. These data represent an unusually facile O-H bond dissociation for a phenol containing a strongly electron withdrawing group. This atypical reactivity arises from an intramolecular network of hydrogen bonds that both stabilize the incipient radical and facilitate extended delocalization through atoms external to the aromatic ring. The additional influence of stereochemistry on BDE is computed to be 2.0 kcal/mol. Data presented are for gas phase molecules, but solvents are unlikely to strongly modify these results since most polar groups are involved in intramolecular hydrogen bonds and thus less available for association with solvent. Citrinin and the Michael addition products are likely too toxic for use as antioxidants in organisms but this study clearly identifies specific reaction sites in the active form, thus guiding rational design of synthetic derivatives with more favorable biocompatibility.     

The effect of intramolecular interactions on hydrogen bond acidity

DFT calculations on a range of molecules containing intramolecular hydrogen bonds are reported, with a view to establishing how intramolecular hydrogen bonding affects their intermolecular interactions. It is shown that properties such as the energy of the intramolecular H-bond are unrelated to the ability to form external H-bonds. Conversely, several properties of complexes with a reference base correlate well with an experimental scale of H-bond acidity, and accurate predictive models are determined. A more detailed study, using electrostatic and overlap properties of complexes with a reference base, is used to predict the location, as well as strength, of hydrogen bond acidity. The effects of intramolecular hydrogen bonding on acidity can be seen not just on O-H and N-H, where acidity is greatly reduced, but also on certain C-H groups, which in some cases become the primary source of acidity.     

Comparative estimation of the energies of intramolecular C-H…O,N-H…O,and O-H…O hydrogen bonds according to the QTAIM analysis and NMR spectroscopy data

The energies of intramolecular C-H…O, N-H…O, and O-H…O hydrogen bonds in model compounds are empirically estimated based on the values of the hydrogen bond induced weak-field shift of the bridging hydrogen atom signal in the ¹H NMR spectrum. It is supported by a theoretical estimation of these energies based on the electron density value at the hydrogen bond critical point calculated within the QTAIM method. Good agreement between the empirical and theoretical estimates is found, which gives evidence of their reliability. It is shown that from the standpoint of their strength the intramolecular N-H…O and O-H…O hydrogen bonds can be classified as moderate whereas the intramolecular C-H…O hydrogen bonds must be classified as very weak interactions similar in their energy significance to van der Waals interactions.     

Tunnelling under a conical intersection: application to the product vibrational state distributions in the UV photodissociation of phenols

When phenol is photoexcited to its S(1) (1(1)ππ?) state at wavelengths in the range 257.403 ≤ λ(phot) ≤ 275.133 nm the O-H bond dissociates to yield an H atom and a phenoxyl co-product, with the available energy shared between translation and well characterised product vibration. It is accepted that dissociation is enabled by transfer to an S(2) (1(1)πσ?) state, for which the potential energy surface (PES) is repulsive in the O-H stretch coordinate, R(O-H). This S(2) PES is cut by the S(1) PES near R(O-H) = 1.2 ? and by the S(0) ground state PES near R(O-H) = 2.1 ?, to give two conical intersections (CIs). These have each been invoked-both in theoretical studies and in the interpretation of experimental vibrational activity-but with considerable controversy. This paper revisits the dynamic mechanisms that underlie the photodissociation of phenol and substituted phenols in the light of symmetry restrictions arising from torsional tunnelling degeneracy, which has been neglected hitherto. This places tighter symmetry constraints on the dynamics around the two CIs. The non-rigid molecular symmetry group G(4) necessitates vibronic interactions by a(2) modes to enable coupling at the inner, higher energy (S(1)/S(2)) CI, or by b(1) modes at the outer, lower energy (S(2)/S(0)) CI. The experimental data following excitation through many vibronic levels of the S(1) state of phenol and substituted phenols demonstrate the effective role of the ν(16a) (a(2)) ring torsional mode in enabling O-H bond fission. This requires tunnelling under the S(1)/S(2) CI, with a hindering barrier of ～5000 cm(-1) and with the associated geometric phase effect. Quantum dynamic calculations using new ab initio PESs provide quantitative justification for this conclusion. The fates of other excited S(1) modes are also rationalised, revealing both spectator modes and intramolecular vibrational redistribution between modes. A common feature in many cases is the observation of an extended, odd-number only, progression in product mode ν(16a) (i.e., the parent mode which enables S(1)/S(2) tunnelling), which we explain as a Franck-Condon consequence of a major change in the active vibration frequency. These comprehensive results serve to confirm the hypothesis that O-H fission following excitation to the S(1) state involves tunnelling under the S(1)/S(2) CI-in accord with conclusions reached from a recent correlation of the excited state lifetimes of phenol (and many substituted phenols) with the corresponding vertical energy gaps between their S(1) and S(2) PESs.     

Bond critical points in the electronic structures of the main group diatomic hydrides of lithium through bromine

The bond critical points and associated electronic properties of the diatomic hydrides of the twenty-one main group elements from lithium to bromine have been calculated with large basis sets. As part of a systematic study of the polarity of chemical bonds, the position of the bond critical point, the charge density at the bond critical point, the Laplacian of the charge density at the bond critical point, and the molecular dipole moment of each molecule have been calculated. Particular attention has been paid to the effect of bond length elongation and contraction on the electronic properties. Variation of the bond length reveals that with atoms of low electronegativity, the bond critical point of AH tends to follow atom A, whereas with atoms of high electronegativity, the bond critical point tends to follow the hydrogen atom as the bond lengthens. Furthermore, it is shown that some properties of the diatomic hydrides vary monotonically within each row of the periodic table, while others effect a classification according to the character of the bond.     

Blue-shifted A-H stretching modes and cooperative hydrogen bonding. 1. Complexes of substituted formaldehyde with cyclic hydrogen fluoride and water clusters

The structures and vibrational spectra of the intermolecular complexes formed by insertion of substituted formaldehyde molecules HRCO (R = H, Li, F, Cl) into cyclic hydrogen fluoride and water clusters are studied at the MP2/aug-cc-pVTZ computational level. Depending on the nature of the substituent R, the cluster type, and its size, the C-H stretching modes of HRCO undergo large blue and partly red shifts, whereas all the F-H and O-H stretching modes of the conventional hydrogen bonds are strongly red-shifted. It is shown that (i) the mechanism of blue shifting can be explained within the concept of the negative intramolecular coupling between C-H and C=O bonds that is inherent to the HRCO monomers, (ii) the blue shifts also occur even if no hydrogen bond is formed, and (iii) variation of the acceptor X or the strength of the C-H...X hydrogen bond may either amplify the blue shift or cause a transition from blue shift to red shift. These findings are illustrated by means of intra- and intermolecular scans of the potential energy surfaces. The performance of the negative intramolecular coupling between C-H and C=O bonds of H(2)CO is interpreted in terms of the NBO analysis of the isolated H(2)CO molecule and H(2)CO interacting with (H2O)n and (HF)n clusters.     

Chiral smectogens with four-phenyl-ring molecular core,laterally substituted by iodine atom

Two series of lactic acid derivatives, based on four-ring molecular core laterally substituted by iodine atom, have been synthesised and their liquid crystalline properties studied. The non-chiral chain length has been varied and its influence on mesomorphic properties studied. All new compounds reveal the SmA*-SmC* phase sequence in an extremely broad temperature interval. The experimental techniques, namely the polarising optical microscopy, DSC, X-ray diffraction and helical pitch measurements, have been applied to establish the physical properties. New materials denoted JFRm/6 and JFRm/MB (with varying m as a number of carbon atoms in the non-chiral chain) are compared with the previously synthesised analogues (non-substituted and laterally substituted by a different halogen atom, namely bromine and chlorine).     

取代1-氯蒽醌中分子内卤键的电子密度拓扑分析

运用量子化学密度泛函B3LYP方法,在6-311＋＋G（d,p）基组水平上对邻位和间位取代1-氯葸醌的分子内卤键进行了研究．用电子定域函数和“分子中的原子,,理论对分子内卤键的性质进行了电子密度拓扑分析．通过对计算得到的密度矩阵进行σ-π兀分离,得到了π-键的键径和分子图,并讨论了。电荷密度和兀电荷密度对卤键的影响．结果表明,键鞍点和环鞍点处的电子密度拓扑性质均可作为衡量分子内卤键强度的量度．键鞍点和环鞍点处的电荷密度P越大,键鞍点与环鞍点的距离越大,卤键强度越大．除σ电荷密度外,π电荷密度对分子内卤键的性质也有明显影响．     

Investigations into the nitric acid mediated dehalonitration of halophenols

A reaction of nitric acid with bromophenols and iodophenols results in substitution of the halogen with a nitro group. The study indicates moderate reactivity for bromophenols and iodophenols, while chlorophenols were found to be sluggish in this reaction.     

Electronic effects on O-H proton dissociation energies of phenolic cation radicals: a DFT study

The electronic effects on O-H proton dissociation energies (PDEs) of para- and meta-substituted phenolic cation radicals have been investigated by density functional theory (DFT) using B3LYP function on a 6-31G(d, p) basis set. The calculation results indicate that electron-donating groups raise the O-H PDE and electron-withdrawing groups reduce the parameter, which are opposite to the electronic effects on O-H bond dissociation energies (BDEs). In addition, the electronic effects on O-H PDE are much stronger than those on O-H BDE. The differences result from the distinct electronic effects on stabilities of phenolic cation radicals and parent phenols. The finding also implies the proton-transfer process is unlikely a rate-controlling step for phenolic antioxidants to scavenge free radicals. Moreover, like O-H BDE, O-H PDE correlate better with the resonance parameter R+ than with field/inductive parameter F. Therefore, O-H PDEs of para-substituted phenolic cation radicals are mainly governed by the resonance effect.