Effect of solvation on induce-fit molecular recognition in supercritical fluid to organic crystals immobilized on a quartz crystal microbalance.

The inclusion behavior of guest molecules to a solid apohost of an orthogonal anthracene-bis(resorcinol)tetraol (1) was investigated in supercritical carbon dioxide (scCO(2)) by using a 9 MHz quartz-crystal microbalance (QCM). Compound 1 forms crystals composed of molecular-sheet bound together by an extensive hydrogen-bonded network. The selective binding of gaseous ethyl acetate to the apohost-immobilized QCM in scCO(2) was observed, and the inclusion amount of ethyl acetate showed a drastic increase above a threshold concentration, [Guest](th) = 0.08 M, and the apparent Gibbs' free energy for the binding was DeltaG(app) = -1.3 kcal mol(-1). Similar selective bindings of ethyl acetate or ethanol had been observed in the gas phase and in water: [Guest](th) = 0.002 M with DeltaG(app) = -3.5 kcal mol(-1) and [Guest](th) = 0.5 M with DeltaG(app) = -0.41 kcal mol(-1), respectively. These values obtained in scCO(2) were intermediate between those in the gas and water phases. Since various physical properties (viscosity, density, polarity, diffusion constant, and solvation) of supercritical fluid are known to be intermediate between gas and liquid, these values clearly reflect the solvation behavior of guest molecules. Thus, the lower solvation of guest molecules indicates the lower threshold concentration and the larger binding energy in the following order: in air > in scCO(2) > in water.     

Potassium-thiacalix[8]arene assembly: structure and guest sorption profiles

Treatment of thiacalix[8]arene (3.8H) with KH in THF, followed by recrystallization from methanol, affords an adduct of [K4(3.4H)].8MeOH as a pale yellow crystal (4), which shows highly-extensive coordination that gives rise to a zeolitic structure. An adduct of 4 gives apohost [K4(3.4H)] with the loss of methanol, which can adsorb such gaseous organic guest molecules as methanol and benzene. After binding methanol as the guest molecule, the apohost is converted back to the original structure of 4.     

Inclusion by a fluorenyl host with volatile guests: structures, thermal stability and kinetics

The structures of the inclusion compounds formed by the host H = 9,9'-(biphenyl-4,4'-diyl)bis(fluoren-9-ol) with N,N-dimethylacetamide (H.2DMA and H.4DMA), 1,4-dioxane (H.3DIOX), methyl ethyl ketone (H.2MEK), as well as that of the apohost have been elucidated. The compounds were characterised by thermal analysis and solid state NMR, and the kinetics of desorption of H.4DMA, H.2DMA and H.3DIOX have been examined.     

Electron Density Shift in Imidazolium Derivatives upon Complexation with Cucurbit[6]uril

In this study, we have investigated the supramolecular interaction between series of 1‐alkyl‐3‐methylimidazolium guests with variable alkyl substituent lengths and cucurbit[6]uril (CB6) in the solution and the solid state. Correct interpretation of ¹H NMR spectra was a key issue for determining the binding modes of the complexes in solution. Unusual chemical shifts of some protons in the ¹H NMR spectra were explained by the polarization of the imidazolium aromatic ring upon the complexation with the host. The formation of 1:1 complex between 1‐ethyl‐3‐methylimidazolium and CB6 is in disagreement with previously reported findings describing an inclusion of two guest molecules in the CB6 cavity.     

Investigation of the cyclodextrin complexes of mandelic acid derivatives

Racemic free mandelic acid and its methyl, ethyl, isoamyl and benzyl esters were found to form inclusion complexes with all the three studied natural cyclodextrins proved by thermoanalytical results. Differences between the solid state stability of guests were detected mainly by evolved gas analysis. Even signs of an eventual optical resolution by molecular inclusion were observed in several cases, but still not sufficiently proven. Due to the rather high volatility and low melting points of the majority of guest substances DSC technique was found to be suitable for studying the cyclodextrin complexes of mandelic acid. Dedicated to Prof. József Szejtli on the occasion of his 60^th birthday     

Inclusion of the regioisomeric nitrobenzene derivatives and ferrocene guests by β-cyclodextrin polymer and their transport through the polymer matrix

Host-guest equilibria have been investigated involving inclusion sites of the microparticulate amorphous β-cyclodextrin polymer, β-CDP-25, and a range of redox guests comprising regioisomeric nitrobenzene derivatives and ferrocene. The equilibria were studied by the batch method. Inclusion-governed, Langmuir-type sorption equilibria occurred in the β-CDP-25/guest systems studied in 1:1 (v/v) aqueous methanolic solutions. A 1:1 (host inclusion site)/guest stoichiometry was found and sorption equilibrium constants were determined. The values of the constants changed by a factor of 20 between the most weakly and strongly included guests. Regioselective discrimination of β-CDP-25 was most pronounced with respect to nitrophenols. Transport phenomena of guest molecules in the β-CDP-25 matrix have also been studied. The apparent diffusion coefficients of guest molecules were determined in the β-CDP-25 matrix by chronamperometry at the (β-CDP-25)-PTFE-carbon composite electrodes. These diffusion coefficients were almost four orders of magnitude lower than the corresponding coefficients of guest molecules in solution in the absence of β-CD. The diffusion mechanism was postulated for the guest molecules in the β-CDP-25 matrix, which invoked hopping of the molecules between inclusion sites.     

Simultaneous determination of odorous volatile organic compounds with gas chromatography and a thermal desorber: A case study on methyl ethyl ketone, methyl isobutyl ketone, butyl acetate, toluene, and xylene

In this study, a series of experiments were conducted to examine the feasibility of the gas chromatographic approach for the quantification of several odorous volatile organic compounds (VOCs) in environmental samples which included methyl ethyl ketone, isobutyl alcohol, methyl isobutyl ketone, and butyl acetate plus benzene, toluene, and xylene (namely, BTX). The gaseous working standards (WS) of seven compounds were initially calibrated at varying concentration ranges by direct injection (DI) into GC injector. The detection properties of these compounds were then tested with a thermal desorber (TD). The relative sensitivities of three aromatic VOCs differed greatly between DI and TD methods. In contrast, four polar VOCs tend to consistently exhibit relative enhancement in response factors with increasing molecular mass (an exception of butyl acetate), regardless of method. The TD-based analysis was reliable enough to detect all target VOCs below their odor threshold values with their detection limit (DL) values. This TD method, when tested against a number of environmental samples collected from several industrial facilities, confirmed the presence of these odorous VOCs at a wide concentration range.     

Equilibrium isotope effects on noncovalent interactions in a supramolecular host-guest system

The self-assembled supramolecular complex [Ga(4)L(6)](12-) (1; L = 1,5-bis[2,3-dihydroxybenzamido]naphthalene) can act as a molecular host in aqueous solution and bind cationic guest molecules to its highly charged exterior surface or within its hydrophobic interior cavity. The distinct internal cavity of host 1 modifies the physical properties and reactivity of bound guest molecules and can be used to catalyze a variety of chemical transformations. Noncovalent host-guest interactions in large part control guest binding, molecular recognition and the chemical reactivity of bound guests. Herein we examine equilibrium isotope effects (EIEs) on both exterior and interior guest binding to host 1 and use these effects to probe the details of noncovalent host-guest interactions. For both interior and exterior binding of a benzylphosphonium guest in aqueous solution, protiated guests are found to bind more strongly to host 1 (K(H)/K(D) > 1) and the preferred association of protiated guests is driven by enthalpy and opposed by entropy. Deuteration of guest methyl and benzyl C-H bonds results in a larger EIE than deuteration of guest aromatic C-H bonds. The observed EIEs can be well explained by considering changes in guest vibrational force constants and zero-point energies. DFT calculations further confirm the origins of these EIEs and suggest that changes in low-frequency guest C-H/D vibrational motions (bends, wags, etc.) are primarily responsible for the observed EIEs.     

Cyclophane-lectin Conjugates as a New Class of Water-soluble Host

A conjugate composed of tetraaza[6.1.6.1]paracyclophane bearing carboxylic acids and lectin, a carbohydrate binding protein, was prepared. The specific saccharide-binding abilities as well as the secondary structural features of the lectin were not disturbed, when the cyclophane were covalently bound to the lectin. The conjugate was found to act as a water-soluble host for inclusion of anionic guest molecules such as 6-p-toluidino-naphthalene-2-sulfonate (TNS) and 8-anilinonaphthalene-1-sulfonate (ANS) in aqueous acetate buffer (pH 4.0) with binding constants of 4.2 × 10⁴ and 1.5 × 10⁴ dm³ mol⁻¹, respectively. The obtained binding constants were much larger than those by untethered water-soluble cyclophane. A highly desolvated microenvironment was provided by the cyclophane cavity on the protein surfaces so that the tight host–guest interaction, which brought about the marked motional repression of the entrapped guests, became effective. The conjugate also showed molecular discrimination capabilities toward the anionic guests through electrostatic repulsion mechanism originating from acid-dissociation equilibrium of carboxylic acids of the cyclophane branches.     

新型Schiff碱分子钳对中性分子的识别性能研究

采用差紫外光谱法考察了3种新型Schiff碱分子钳对一系列二苯甲酮、芳香二胺的识别性能.测定了主客体间的结合常数(Ka)和自由能变化(ΔG0).结果表明,分子钳对所考察的客体显示良好的识别作用,主客体间形成1:1型超分子配合物.讨论了识别作用的推动力与形状、大小匹配和几何互补等因素对形成主客体配合物的影响,并利用核磁氢谱与计算机模拟作为辅助手段对主要的实验结果与现象进行了解释.     

Non-covalent surface modification of metal-macrocycle framework with mono-substituted benzenes

Recently, we have reported a metal-macrocycle framework (MMF) with five enantiomerically paired molecular binding pockets that exhibit site-selective guest arrangement on the nano-channel surface in soaking experiments using a variety of guest molecules. The guest inclusion is based largely on molecular exchange between solvent molecules such as CH₃CN and guest molecules on the surface. Herein, we report that the molecular arrangement on the nano-channel surface varies with size, shape and/or chemical properties of functional groups of guests, mono-substituted benzene derivatives, such as benzonitrile, acetophenone and nitrobenzene. In their inclusion complexes, polar nitrile, acetyl and nitro groups serve as molecular anchors to a macrocyclic cavity through hydrogen bonding. Notably, benzonitrile and benzenesulphonic acid bind only to one pair of enantiomeric binding pockets. Such a highly site-selective binding would enable further multi-component surface modifications in the MMF.     

Encapsulation of sodium nimesulide and precursors in beta-cyclodextrin

Crystalline 1:1 inclusion complexes with beta-cyclodextrin (beta-CD) and the sodium salt of nimesulide (4-nitro-2-phenoxymethanesulfonanilide), and the sodium salt of the derivative 2-phenoxymethanesulfonanilide, have been prepared by co-precipitation from aqueous solution. The presence of true inclusion complexes was supported by elemental analysis, thermogravimetry and powder X-ray diffraction. FTIR and 13C CP MAS NMR spectroscopy confirmed that no chemical modification of the guests occurred upon formation of inclusion complexes. The reaction of the precursors 2-phenoxynitrobenzene and 2-phenoxyaniline with beta-CD was also studied and crystalline inclusion complexes with a 2:1 (host-to-guest) stoichiometry were isolated. The interaction of the different guest species with beta-CD host molecules was studied theoretically by carrying out ab initio calculations. Favourable inclusion geometries were obtained for the four guests mentioned above. On the other hand, it was found that the inclusion of the neutral guests nimesulide and 2-phenoxymethanesulfonanilide was considerably less favourable. This is in agreement with the experimentally observed difficulty in isolating true inclusion complexes containing these guests and beta-CD. The calculated lower stability is attributed to the different steric hindrance arising from the different conformational preferences of neutral and anionic forms.     

Modulation with acetonitrile of the dynamics of guest binding to the two distinct binding sites of cholate aggregates

Bile salt aggregates are supramolecular systems containing two different binding sites. The effect of the addition of acetonitrile on the specificity and dynamics of guest binding to the two binding sites of cholate aggregates was studied. The protection of guests included in the aggregate from interaction with ions in the aqueous phase was evaluated from quenching of the singlet and triplet excited states of guest molecules bound to the cholate aggregates. The dynamics of guest binding to the primary and secondary binding sites of the cholate aggregates were determined at increasing acetonitrile mole fractions. The structure of the aggregates was not significantly altered provided the cholate concentrations were higher than 20 mM and the acetonitrile mole fraction did not exceed 0.033 (9.1% v/v). These results show that acetonitrile can be used to modulate the solubility of guests in the aggregates and to manipulate the residence time of guests in the primary and secondary binding sites.     

Nonregular structure-property relationships for inclusion parameters of tert-butylcalix[5]arene

The effect of macrocycle size on the structure-property relationships was studied for inclusion compounds of tert-butylcalix[n]arenes (n=4,5) with volatile organic guests having various molecular size and group composition. Vapor-sorption isotherms, guest-inclusion stoichiometry and Gibbs energy, thermostability parameters and decomposition enthalpies were determined for host-guest compounds (clathrates) obtained using saturation of solid calixarene powder with guest vapor. The increase of the host macrocycle in the studied calixarene pair changes the observed structure-property relationship from the guest-binding selectivity mostly seen in inclusion Gibbs energy to the high sensitivity for guest structure in inclusion stoichiometry. The host with the larger macrocycle has more clathrates with stepwise formation and decomposition. Specific types of guest binding with solid hosts are discussed.     

Binding affinity properties of dendritic glycosides based on a beta-cyclodextrin core toward guest molecules and concanavalin A.

The inclusion behavior and concanavalin A binding properties of hepta-antennated and newly synthesized tetradeca-antennated C-6-branched mannopyranosyl and glucopyrannosyl cyclomaltoheptaose (beta-cyclodextrin) derivatives have been evaluated by isothermal titration microcalorimetry and enzyme-linked lectin assay (ELLA), respectively. The synthesis of three first-order dendrimers based on a beta-cyclodextrin core containing 14 1-thio-beta-D-glucose, 1-thio-beta-mannose, and 1-thio-beta-rhamnose residues was performed following a convergent approach and involving (1) preparation of a thiolated bis-branched glycoside building block and (2) attachment of the building block onto heptakis(6-deoxy-6-iodo)-beta-cyclodextrin. Calorimetric titrations performed at 25 degrees C in buffered aqueous solution (pH 7.4) gave the affinity constants and the thermodynamic parameters for the inclusion complex formation of these beta-cyclodextrin derivatives with guests sodium 8-anilino-1-naphthalensulfonate (ANS) and 2-naphthalenesulfonate. The host capability of the persubstituted beta-cyclodextrins decreased with respect to the native beta-CD when sodium 2-naphthalenesulfonate was used as a guest and improved when ANS was used as a guest molecule. Heptavalent mannoclusters based on beta-CD cores enhance the lectin binding affinity due to the cluster effect; however, the increase of the valency from 7 to 14 ligands did not contribute to the improvement of the concanavalin A binding affinity. In addition, the synthesized hyperbranched mannoCDs lost completely the capability as a host molecules.     

Recognition of N‐Alkyl and N‐Aryl Acetamides by N‐Alkyl Ammonium Resorcinarene Chlorides

N‐Alkyl ammonium resorcinarene chlorides are stabilized by an intricate array of intra‐ and intermolecular hydrogen bonds that leads to cavitand‐like structures. Depending on the upper‐rim substituents, self‐inclusion was observed in solution and in the solid state. The self‐inclusion can be disrupted at higher temperatures, whereas in the presence of small guests the self‐included dimers spontaneously reorganize to 1:1 host–guest complexes. These host compounds show an interesting ability to bind a series of N‐alkyl acetamide guests through intermolecular hydrogen bonds involving the carbonyl oxygen (C?O) atoms and the amide (NH) groups of the guests, the chloride anions (Cl^?) and ammonium (NH₂⁺) cations of the hosts, and also through CH ??? π interactions between the hosts and guests. The self‐included and host–guest complexes were studied by single‐crystal X‐ray diffraction, NMR titration, and mass spectrometry.     

八元瓜环与二(2-亚甲基-1,2,3,4-四氢异喹啉)的自组装模式

以用1,2,3,4-四氢喹啉和二溴乙烷合成的二(2-亚甲基-1,2,3,4-四氢异喹啉)的溴化氢酸盐为客体, 八元瓜环为主体, 利用1H NMR技术, 单晶X射线衍射方法以及理论计算等方法, 考察了两者的自组装模式. 1H NMR分析结果表明, 在溶液状态条件下, 不仅每一个八元瓜环分子同时与两个客体分子的芳环部分相互作用, 而且每一个客体分子两端的芳环部分同时与两个八元瓜环分子相互作用, 从而形成一维的自组装超分子链; 而在固体状态下, 每一个八元瓜环也可同时包结两个客体的芳环部分而形成三元的自组装结构, 但八元瓜环包结两个客体形成一独立的三元自组装结构. 利用晶体结构建立模型的计算结果说明, 模拟溶液状态比固体状态条件下的主客体包结更有利于体系能量的降低, 与主客体在溶液中1H NMR实验结果相符.     

Guest encapsulation and self-assembly of a cavitand-based coordination capsule

The synthesis and spectroscopic characterization of a cavitand-based coordination capsule 14 BF4 of nanometer dimensions is described. Encapsulation studies of large aromatic guests as well as aliphatic guests were performed by using 1H NMR spectroscopy in [D1]chloroform. In addition to the computational analysis of the shape and geometry of the capsule, an experimental approach to estimate the interior size of the cavity is discussed. The cavity provides a highly rigid binding space in which molecules with lengths of approximately 14 A can be selectively accommodated. The rigid cavity distinguished slight structural differences in the flexible alkyl-chain guests as well as the rigid aromatic guests. The detailed thermodynamic studies revealed that not only CH-pi interactions between the methyl groups on the guest termini and the aromatic cavity walls, but also desolvation of the inner cavity play a key role in the guest encapsulation. The cavity preferentially selected the hydrogen-bonded heterodimers of a mixture of two or three carboxylic acids 18-20. The chiral capsule encapsulated a chiral guest to show diastereoselection.     

水溶性六元瓜环衍生物与1,ω-亚烷基吡啶主客体配合物的^1HNMR及晶体结构

利用^1HNMR技术以及单晶X衍射技术考察对称四甲基取代六元瓜环（TMeQ[6]）与几种1,ω-亚烷基吡啶阳离子（ω=2,4,6,8,10）客体的相互作用．在这些包结配合物中,TMeQ[6]的端口效应以及空腔效应同时存在,其主客体作用模式随着客体亚烷基碳链长短不一而各不相同．对于客体1,2-二乙基吡啶（Edpy）,TMeQ[6]包结Edpy的带正电荷的吡啶环部分,形成一不对称的包结配合物;对于客体1,4-二丁基吡啶（Bdpy）,TMeQ[6]选择性包结Bdpy的吡啶环部分或烷基部分存在竞争作用和快速交换;而具有较长碳链的客体1,6-二己基吡啶（Hdpy）和1,8-二丁庚基吡啶（Odpy）与TMeQ[6]通过空腔的疏水作用以及外部的离子-偶极作用形成稳定的类轮烷包结配合物;客体1,10-二癸基吡啶（Ddpy）的两个吡啶环分别被两个TMeQ[6]包结形成哑铃型的包结配合物．     

Highly emissive supramolecular oligo(p-phenylene vinylene) dendrimers

pi-Conjugated oligo(p-phenylene vinylene) (OPV) guest molecules for interaction with dendritic hosts were synthesized and fully characterized by NMR spectroscopy, MALDI-TOF-MS, elemental analysis and optical measurements. The binding properties of the five different OPV guests to a N,N-bis[(3-adamantyl ureido) propyl] methylamine host have been investigated. The guests that contained an aryl urea glycine spacer were bound with the highest association constant. Subsequently, an adamantyl urea modified fifth generation poly(propylene imine) dendrimer was synthesized as a multivalent host which contains 32 N,N-bis[(3-adamantyl ureido) propyl] amine binding sites. Size exclusion chromatography showed that 32 of the OPV guests strongly bind to the fifth generation adamantyl functionalized dendritic host. In the case of the supramolecular dendritic host/guest system smooth homogeneous thin films could be obtained by spin coating. The dendritic guest-host complexes showed a significantly higher emission upon binding then that of the individual molecules due to the three-dimensional orientation of the OPV guest molecules. In the solid state, this enhancement in luminescence was a factor of 10. The pi-conjugated oligomers are less aggregated in the supramolecular assemblies presumably because of a shielding effect of the bulky adamantyl units present in the hosts.