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1.
The STD NMR technique has originally been described as a tool for screening large compound libraries to identify the lead compounds that are specific to target proteins of interest. The application of this technique in the qualitative epitope mapping of ligands weakly binding to proteins, virus capsid shells, and nucleic acids has also been described. Here we describe the application of the STD NMR intensity-restrained CORCEMA optimization (SICO) procedure for refining the bound conformation of UDP-galactose in galactosyltransferase complex using STD NMR intensities recorded at 500 MHz as the experimental constraints. A comparison of the SICO structure for the bound UDP-galactose in solution with that in the crystal structure for this complex shows some differences in ligand torsion angles and V253 side-chain orientation in the protein. This work describes the first application of an STD NMR intensity-restrained CORCEMA optimization procedure for refining the torsion angles of a bound ligand structure. This method is likely to be useful in structure-based drug design programs since most initial lead compounds generally exhibit weak affinity (millimolar to micromolar) to target proteins of pharmaceutical interest, and the bound conformation of these lead compounds in the protein binding pocket can be determined by the CORCEMA-ST refinement.  相似文献   

2.
A new ligand exchange chiral stationary phase (new CSP) containing residual silanol group‐protecting n‐octyl groups on the silica surface was prepared by treating a ligand exchange CSP (original CSP) based on sodium N‐[(R)‐2‐hydroxy‐1‐phenylethyl]‐N‐undecylaminoacetate bonded to silica gel with excess n‐octyltriethoxysilane. The new and original CSPs containing an identical amount of chiral selector were applied to the resolution of α‐amino acids and proton pump inhibitors (PPIs) including omeprazole, pantoprazole, lansoprazole, and rabeprazole. The separation factors (α) and resolutions (RS) were greater on the new CSP than on the original CSP except for the resolution of asparagine. The trends of the retention factors (k1) for the resolution of α‐amino acids on the new and original CSPs with the variation of the organic modifier content in aqueous mobile phase were opposite to those for the resolution of PPIs. Removal of the nonenantioselective interactions between the residual silanol groups and the analytes and the improved lipophilicity of the new CSP were proposed to be responsible for the improved chiral recognition ability of the new CSP and the different retention behaviors of the enantiomers between the new and original CSPs.  相似文献   

3.
Acetylcholinesterase (AChE) inhibition is one of the most currently available therapies for the management of Alzheimer’s disease (AD) symptoms. In this context, NMR spectroscopy binding studies were accomplished to explain the inhibition of AChE activity by Salvia sclareoides extracts. HPLC‐MS analyses of the acetone, butanol and water extracts eluted with methanol and acidified water showed that rosmarinic acid is present in all the studied samples and is a major constituent of butanol and water extracts. Moreover, luteolin 4′‐O‐glucoside, luteolin 3′,7‐di‐O‐glucoside and luteolin 7‐O‐(6′′‐O‐acetylglucoside) were identified by MS2 and MS3 data acquired during the LC‐MSn runs. Quantification of rosmarinic acid by HPLC with diode‐array detection (DAD) showed that the butanol extract is the richest one in this component (134 μg mg?1 extract). Saturation transfer difference (STD) NMR spectroscopy binding experiments of S. sclareoides crude extracts in the presence of AChE in buffer solution determined rosmarinic acid as the only explicit binder for AChE. Furthermore, the binding epitope and the AChE‐bound conformation of rosmarinic acid were further elucidated by STD and transferred NOE effect (trNOESY) experiments. As a control, NMR spectroscopy binding experiments were also carried out with pure rosmarinic acid, thus confirming the specific interaction and inhibition of this compound against AChE. The binding site of AChE for rosmarinic acid was also investigated by STD‐based competition binding experiments using Donepezil, a drug currently used to treat AD, as a reference. These competition experiments demonstrated that rosmarinic acid does not compete with Donepezil for the same binding site. A 3D model of the molecular complex has been proposed. Therefore, the combination of the NMR spectroscopy based data with molecular modelling has permitted us to detect a new binding site in AChE, which could be used for future drug development.  相似文献   

4.
We herein report on solution structural studies of Ru^Ⅱ catalysts (3a, 9) composed of achiral bisphosphine ligands (4, 8) and the enantiopure 1,2-diphenylethylenediamine (DPEN). Complete chiral induction from enantiopure (R,R)-DPEN to achiral bisphosphine ligand 3a was observed in solution, with the complex adopting a single, stable and non-fluxional (even at 70 ℃) configuration. The coordination of the C=O moiety in 4 to the cationic Run center is considered to be of key importance in providing the higher thermodynamic and kinetic rotation barrier for the flexible bisphosphine ligand in the complex. The obtained enantioselectivity (91% enantiomeric excess) and sense of chiral induction in the hydrogenation of acetophenone were found to be solely dependent on the chirality of the 1,2-diamine. Consistent with the hydrogenation product, the (R,R)-DPEN induces a M-conformation (fight-handed) chirality for flexible phosphine ligand 4 in the complex, resulting in a 2,2-configuration about the Ru^Ⅱ center.  相似文献   

5.
The polymerization of α‐N‐(α′‐methylbenzyl) β‐ethyl itaconamate derived from racemic α‐methylbenzylamine (RS‐MBEI) by initiation with dimethyl 2,2′‐azobisisobutyrate (MAIB) was studied in methanol kinetically and with ESR spectroscopy. The overall activation energy of polymerization was calculated to be 47 kJ/mol, a very low value. The polymerization rate (Rp ) at 60 °C was expressed by Rp = k[MAIB]0.5±0.05[RS‐MBEI]2.9±0.1. The rate constants of propagation (kp ) and termination (kt ) were determined by ESR. kp was very low, ranging from 0.3 to 0.8 L/mol s, and increased with the monomer concentration, whereas kt (4–17 × l04 L/mol s) decreased with the monomer concentration. Such behaviors of kp and kt were responsible for the high dependence of Rp on the monomer concentration. Rp depended considerably on the solvent used. S‐MBEI, derived from (S)‐α‐methylbenzylamine, showed somewhat lower homopolymerizability than RS‐MBEI. The kp value of RS‐MBEI at 60 °C in benzene was 1.5 times that of S‐MBEI. This was explicable in terms of the different molecular associations of RS‐MBEI and S‐MBEI, as analyzed by 1H NMR. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 4137–4146, 2000  相似文献   

6.
The kinetics of the polycondensation and copolycondensation reactions of bis(3‐hydroxypropyl) terephthalate (BHPT) and bis(4‐hydroxybutyl) terephthalate (BHBT) as monomers were investigated at 270 °C in the presence of titanium tetrabutoxide as a catalyst. BHPT was prepared by the ester interchange reaction of dimethyl terephthalate and 1,3‐propanediol (1,3‐PD). Through the same method adopted for BHPT synthesis, BHBT was prepared with 1,4‐butanediol instead of 1,3‐PD. With second‐order kinetics applied for polycondensation, the rate constants of the polycondensation of BHPT and BHBT, k11 and k22, were calculated to be 4.08 and 4.18 min?1, respectively. The rate constants of the cross reactions in the copolycondensation of BHPT and BHBT, k12 and k21, were calculated with results obtained from proton nuclear magnetic resonance spectroscopy analysis. The rate constants during the copolycondensation of BHPT and BHBT at 270 °C decreased in the order k12 > k22 > k11 > k21, indicating that the reactivity of BHBT was larger than that of BHPT at 270 °C. © 2002 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 40: 2435–2441, 2002  相似文献   

7.
赖家平  卢春阳  何锡文 《中国化学》2002,20(10):1012-1018
IntroductionThemolecularlyimprintedpolymers (MIPs)canaf fordspecificrecognitionofimprintmoleculesandmoder aterecognitionofthestructurallyrelatedcompounds .Theycanbeusedasanattractivealternativeorcomple menttonaturalantibodiesandreceptors .1 5MIPshavesomead…  相似文献   

8.
The ring‐opening polymerization (ROP) of ε‐caprolactone (ε‐CL), 4‐methyl‐ε‐caprolactone (4‐MeCL), and 6‐methyl‐ε‐caprolactone (6‐MeCL) with a single‐site chiral initiator, R,R′‐(salen) aluminum isopropoxide (R,R′‐[1]), was investigated. The kinetic data for the ROP of the three monomers at 90° in toluene corresponded to first‐order reactions in the monomer and propagation rate constants of kε‐CL > k4‐MeCL ? k6‐MeCL. A notable stereoselectivity with a preference for the R‐enantiomer was observed in the ROP of 6‐MeCL with R,R′‐[1], whereas for 4‐MeCL, no stereoselectivity was found. © 2006 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 45: 429–436, 2007.  相似文献   

9.
The direct evaluation of dissociation constants (KD) from the variation of saturation transfer difference (STD) NMR spectroscopy values with the receptor–ligand ratio is not feasible due to the complex dependence of STD intensities on the spectral properties of the observed signals. Indirect evaluation, by competition experiments, allows the determination of KD, as long as a ligand of known affinity is available for the protein under study. Herein, we present a novel protocol based on STD NMR spectroscopy for the direct measurements of receptor–ligand dissociation constants (KD) from single‐ligand titration experiments. The influence of several experimental factors on STD values has been studied in detail, confirming the marked impact on standard determinations of protein–ligand affinities by STD NMR spectroscopy. These factors, namely, STD saturation time, ligand residence time in the complex, and the intensity of the signal, affect the accumulation of saturation in the free ligand by processes closely related to fast protein–ligand rebinding and longitudinal relaxation of the ligand signals. The proposed method avoids the dependence of the magnitudes of ligand STD signals at a given saturation time on spurious factors by constructing the binding isotherms using the initial growth rates of the STD amplification factors, in a similar way to the use of NOE growing rates to estimate cross relaxation rates for distance evaluations. Herein, it is demonstrated that the effects of these factors are cancelled out by analyzing the protein–ligand association curve using STD values at the limit of zero saturation time, when virtually no ligand rebinding or relaxation takes place. The approach is validated for two well‐studied protein–ligand systems: the binding of the saccharides GlcNAc and GlcNAcβ1,4GlcNAc (chitobiose) to the wheat germ agglutinin (WGA) lectin, and the interaction of the amino acid L ‐tryptophan to bovine serum albumin (BSA). In all cases, the experimental KD measured under different experimental conditions converged to the thermodynamic values. The proposed protocol allows accurate determinations of protein–ligand dissociation constants, extending the applicability of the STD NMR spectroscopy for affinity measurements, which is of particular relevance for those proteins for which a ligand of known affinity is not available.  相似文献   

10.
In this review anti-metatype antibodies are described invoking new principles in immunoassay development. Anti-metatype antibodies are immunological reagents specific for the conformation of the liganded antibody active site which do not interact with bound ligand or unliganded antibody. Relationships between anti-metatype antibody reactivity and the ligand-induced conformational state of monoclonal antibodies are reviewed with emphasis on the fluorescein hapten as a small molecule model system. One characteristic result of the interaction of anti-metatype antibodies with liganded antibodies is a significant delay in the dissociation rate (k2) of the ligand bound within the primary immune complex. The latter is an important consideration for assay development. Polyclonal and monoclonal anti-metatype antibody reagents are characterized in terms of their differential effects on the ligand dissociation rate. Anti-metatype antibody reactivity is further discussed in terms of protein-protein specificity patterns and relative interactions with idiotype-family members, structural derivatives, and site-specific mutants. Incorporation of principles inherent in the anti-metatype concept and their application to assay development are summarized.Abbreviations D2O deuterium oxide - Fab 50 kd antibody fragment containing VHCH1 + VLCL domains - FITC(I) fluorescein isothiocyanate (isomer I) - Fv 26 kd fragment of the antibody molecule containing the variable domains of the H and L chains - Ig immunoglobulin - IgG immunoglobulin G with a mol. wt. of 150 kd. - IgM immunoglobulin M with a mol. wt. of 106d - Id idiotype - Ka antibody affinity (k1/k2) in M–1 - k1 second order rate of ligand association in M–1s–1 - k2 first order rate of ligand dissociation in s–1 - KD dissociation constant or the reciprocal of the affinity constant (1/Ka) - Mab monoclonal antibody - Met metatype - NMR nuclear magnetic resonance - SCA single chain Fv derivative containing a synthetic linker between the two variable domains - VH variable domain of the antibody H chain - VL variable domain of the antibody L chain  相似文献   

11.
Four enantiopure 1,3‐diethynylallenes (DEAs) with OH termini were attached to the rim of a resorcin[4]arene cavitand. The system undergoes conformational switching between a cage form, closed by a circular H‐bonding array, and an open form, with the tertiary alcohol groups reaching outwards. The cage form is predominant in apolar solvents, and the open conformation in small, polar solvents. Both states were confirmed in solution and in X‐ray co‐crystal structures. ECD spectra of the alleno‐acetylenic cages (AACs) are highly conformation sensitive, the longest wavelength Cotton effect at 304 nm switches from Δ?=+191 m ?1 cm?1 for open (P)4‐AAC?acetonitrile to Δ?=?691 m ?1 cm?1 (ΔΔ?=882 m ?1 cm?1) for closed (P)4‐AAC?cyclohexane. Complete chiral resolution of (±)‐trans‐1,2‐dimethylcyclohexane was found in the X‐ray structures, with (P)4‐AAC exclusively bound to the (R,R)‐ and (M)4‐AAC to the (S,S)‐guest. Guest inclusion occurs in a higher energy diaxial conformation.  相似文献   

12.
The X‐ray crystal and NMR spectroscopic structures of the peptide drug candidate Cilengitide (cyclo(RGDf(NMe)Val)) in various solvents are obtained and compared in addition to the integrin receptor bound conformation. The NMR‐based solution structures exhibit conformations closely resembling the X‐ray structure of Cilengitide bound to the head group of integrin αvβ3. In contrast, the structure of pure Cilengitide recrystallized from methanol reveals a different conformation controlled by the lattice forces of the crystal packing. Molecular modeling studies of the various ligand structures docked to the αvβ3 integrin revealed that utilization of the solid‐state conformation of Cilengitide leads—unlike the solution‐based structures—to a mismatch of the ligand–receptor interactions compared with the experimentally determined structure of the protein–ligand complex. Such discrepancies between solution and crystal conformations of ligands can be misleading during the structure‐based lead optimization process and should thus be taken carefully into account in ligand orientated drug design.  相似文献   

13.
The polymerizations of α‐ethyl β‐N‐(α′‐methylbenzyl)itaconamates carrying (RS)‐ and (S)‐α‐methylbenzylaminocarbonyl groups (RS‐EMBI and S‐EMBI) with dimethyl 2,2′‐azobisisobutyrate (MAIB) were studied in methanol (MeOH) and in benzene kinetically and with electron spin resonance (ESR) spectroscopy. The initial polymerization rate (Rp) at 60 °C was given by Rp = k[MAIB]0.58 ± 0.05[RS‐EMBI]2.4 ± 0.l and Rp = k[MAIB]0.61 ± 0.05[S‐EMBI]2.3 ± 0.l in MeOH and Rp = k[MAIB]0.54 ± 0.05[RS‐EMBI]1.7 ± 0.l in benzene. The rate constants of initiation (kdf), propagation (kp), and termination (kt) as elementary reactions were estimated by ESR, where kd is the rate constant of MAIB decomposition and f is the initiator efficiency. The kp values of RS‐EMBI (0.50–1.27 L/mol s) and S‐EMBI (0.42–1.32 L/mol s) in MeOH increased with increasing monomer concentrations, whereas the kt values (0.20?7.78 × 105 L/mol s for RS‐EMBI and 0.18?6.27 × 105 L/mol s for S‐EMBI) decreased with increasing monomer concentrations. Such relations of Rp with kp and kt were responsible for the unusually high dependence of Rp on the monomer concentration. The activation energies of the elementary reactions were also determined from the values of kdf, kp, and kt at different temperatures. Rp and kp of RS‐EMBI and S‐EMBI in benzene were considerably higher than those in MeOH. Rp of RS‐EMBI was somewhat higher than that of S‐EMBI in both MeOH and benzene. Such effects of the kinds of solvents and monomers on Rp were explicable in terms of the different monomer associations, as analyzed by 1H NMR. The copolymerization of RS‐EMBI with styrene was examined at 60 °C in benzene. © 2003 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 41: 1819–1830, 2003  相似文献   

14.
Functionalization of the inert C? H bonds of unsaturated molecules by transition metal complex is an important means to form new C? C bonds. The functionalization is usually initiated by the ligand dissociation of a complex. In this paper we employ both ab initio and density functional methods to explore the influence of central metals, conformation, solvent and protonation on the ligand dissociation of the (hfac‐O,O)2M(L)(py) complexes [M=Rh(III) or Ir(III), hfac‐O,O=k2‐O,O‐1,1,1,5,5,5‐hexafluoroacetylacetonato, L=CH3, CH3CO2, (CH3CO)2CH, CH3O or OH, py=pyridine]. We demonstrate that ligand pyridine dissociates more easily than the "L" ligands under study in aprotic solvent and gas phase and the dissociation of pyridine is more facile in the trans‐conformation than in the cis‐isomer. These phenomena are rationalized based on electronic structure and molecular orbital interactions. We show that solvation only slightly stabilizes the complexes and does not change the ligand dissociation ordering. In particular, we show that pyridine is no longer the labile ligand in protic media. Instead, the oxygen‐containing ligands (apart from those like hfac that form a cyclic structure with the central metal) that coordinate to the central metal via oxygen atom become the labile ones. Finally our calculations indicate that hfac is a stable ligand, even in protic media.  相似文献   

15.
The reactions of Ca(NO3)2 + Na3PO4 in water and water/sodium bis(2‐ethylhexyl) sulfosuccinate (AOT)/hydrocarbon microemulsions saturated CO2 with various molar ratios of water to surfactant R, oil phases, and surfactant concentrations were investigated by isothermal titration calorimetry. The product of the reaction was confirmed to be sodium‐and‐carbonate‐substituted hydroxyapatite (NaCO3HAP) by Fourier transform infrared spectra (FTIR), energy dispersive spectrometry (EDS), and X‐ray diffraction (XRD). From calorimetric measurements, the molar enthalpies of solution of water in the AOT/n‐dodecane system, and the molar enthalpies, the rate constants, and the activation energies of the reactions were determined. It was found that the enthalpy of solution of water in AOT/n‐dodecane micells and the molar enthalpy of the reaction in the microemulsions increased with the decreases of R until R = 7; below that they kept almost constant. It may be attributed to the increase of the ratio of the bound water to the free water with the decrease of R until there was no free water when R < 7. However, the reaction rate constant k1 was affected by the ionic strength of the medium and log k1 showed a linear dependence on 1/R in the whole range of R we investigated. It was also observed that the rate constant and the enthalpy of the reaction remained almost unchanged when the surfactant concentration and the nature of oil phase varied. © 2011 Wiley Peiodicals, Inc. Int J Chem Kinet 43: 322–330, 2011  相似文献   

16.
The application of a chiral ligand‐exchange column for the direct high‐performance liquid chromatographic enantioseparation of unusual β‐amino acids with a sodium N‐((R)‐2‐hydroxy‐1‐phenylethyl)‐N‐undecylaminoacetate‐Cu(II) complex as chiral selector is reported. The investigated amino acids were isoxazoline‐fused 2‐aminocyclopentanecarboxylic acid analogs. The chromatographic conditions were varied to achieve optimal separation. The effects of temperature were studied at constant mobile phase compositions in the temperature range 5–45°C, and thermodynamic parameters were calculated from plots of lnk or lnα versus 1/T. Δ(ΔH°) ranged from –2.3 to 2.2 kJ/mol, Δ(ΔS°) from –3.0 to 7.8 J mol?1 K?1 and –Δ(ΔG°) from 0.1 to 1.7 kJ/mol, and both enthalpy‐ and entropy‐controlled enantioseparations were observed. The latter was advantageous with regard to the shorter retention and greater selectivity at high temperature. Some mechanistic aspects of the chiral recognition process are discussed with respect to the structures of the analytes. The sequence of elution of the enantiomers was determined in all cases.  相似文献   

17.
The catalytic activity of Pt nanoparticles (PtNPs) with different sizes and shapes was investigated in a photocatalytic hydrogen‐evolution system composed of the 9‐mesityl‐10‐methylacridinium ion (Acr+–Mes: photocatalyst) and dihydronicotinamide adenine dinucleotide (NADH: electron donor), based on rates of hydrogen evolution and electron transfer from one‐electron‐reduced species of Acr+–Mes (Acr.–Mes) to PtNPs. Cubic PtNPs with a diameter of (6.3±0.6) nm exhibited the maximum catalytic activity. The observed hydrogen‐evolution rate was virtually the same as the rate of electron transfer from Acr.–Mes to PtNPs. The rate constant of electron transfer (ket) increased linearly with increasing proton concentration. When H+ was replaced by D+, the inverse kinetic isotope effect was observed for the electron‐transfer rate constant (ket(H)/ket(D)=0.47). The linear dependence of ket on proton concentration together with the observed inverse kinetic isotope effect suggests that proton‐coupled electron transfer from Acr.–Mes to PtNPs to form the Pt? H bond is the rate‐determining step for catalytic hydrogen evolution. When FeNPs were used instead of PtNPs, hydrogen evolution was also observed, although the hydrogen‐evolution efficiency was significantly lower than that of PtNPs because of the much slower electron transfer from Acr.–Mes to FeNPs.  相似文献   

18.
The ground‐ and excited‐state intramolecular proton transfer processes of 2‐(2‐R (R?OH, NH2, SH) phenyl (or pyridyl)) benzoxazoles (or benzothiazoles) are investigated by the DFT methods. The calculated results indicate that in the ground state there is a high correlation (R=0.9950) between the proton transfer barrier and the intramolecular hydrogen bonds (IMHB) strength. The increase of the strength of IMHB in the proton transfer processes leads to a larger barrier contributions. Intramolecular proton transfer process pathway is along with the minimal difference of change value in the IMHB angle. In the excited‐state, there is a similar relationship between the IMHB and the barrier.  相似文献   

19.
Alternating copolymers of α-methylstyrene (α-MeSt) and maleic anhydride (MAn) were prepared by free-radical-initiated polymerization in bulk, benzene, or butanone as solvents. By applying the generalized model described by Shirota and co-workers, the reactivity ratios k1c/k12 and k2c/k21 were calculated from the change of copolymerization rate with monomer feed at constant total monomer concentration. From the equation Rp = Rp(f) + Rp(CT) were calculated Rp(f) and Rp(CT), and it was found that in benzene the reaction proceeds predominantly by the addition of CT-complex monomers, while in butanone, cross propagation of free monomers predominates. Termination occurs predominantly by homotermination of α-MeSt macro free radicals, kt22, although the cross termination kt21 is also operative.  相似文献   

20.
Four aggregation‐induced emission (AIE)‐active chiral binaphthyl‐based molecules, (R/S)‐ 1 and (R/S)‐ 2 , were designed and synthesized. Interestingly, all of them can exhibit reversal circularly polarized luminescence (CPL) signals from solution to aggregation, which could be attributed to the different dihedral angle of binaphthyl units from cis‐conformation in pure THF solution to trans‐conformation in THF/water mixtures.  相似文献   

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