Photoinduced dynamics of hydrated adenine clusters

We studied the photoinduced dynamics of hydrated adenine clusters by multiphoton ionization techniques. The majority of the hydrated adenine monomers are found to experience dissociative ionization, where the adenine monomer ions are produced due to the fragmentation of the water solvents by three-photon process. Due to fast internal conversion from the electronic states reached by the first photon, the fragmentation takes place in the vibrationally excited electronic ground state and in the vibrationally excited ionic states. Thus, the abundance of the hydrated adenine monomer ion depends on the excitation photon energy, possibly because the lifetime of the intermediate states is different and an internal conversion competes with direct ionization. In addition, a significant amount of protonated adenine monomer is observed. This indicates that the proton transfer is followed by the fragmentation in the hydrated adenine clusters. The abundance of the protonated adenine monomer also depends on the excitation photon energy mainly due to the ionization efficiency of the parent species.     

Photoionization of epichlorohydrin enantiomers and clusters studied with circularly polarized vacuum ultraviolet radiation

The photoionization of enantiomerically pure epichlorohydrin (C(3)H(5)OCl) has been studied using linearly and circularly polarized vacuum ultraviolet synchrotron radiation. The threshold photoelectron spectrum was recorded and the first three bands assigned using molecular orbital calculations for the expected conformers, although uncertain experimental conformer populations and an anticipated breakdown in Koopmans' theorem leave some ambiguity. Measurements of the photoelectron circular dichroism (PECD) were obtained across a range of photon energies for each of these bands, using electron velocity map imaging to record the angular distributions, during which a record PECD chiral asymmetry factor of 32% was observed. A comparison with calculated PECD curves clarifies the assignment achieved using ionization energies alone and further suggests a likely relative population of the conformers. Threshold photoelectron-photoion coincidence methods were used to study the ionic fragmentation of epichlorohydrin. Fragment ion appearance energies show nonstatistical behavior with clear indications that the cationic epoxide ring is unstable and lower energy decay channels proceeding via ring breaking are generally open. Extensive neutral homochiral clusters of epichlorohydrin may be formed in supersonic molecular beam expansions seeded in Ar. Electron angular distribution measurements made in coincidence with dimer and trimer ions are used to effect an examination of the PECD associated with ionization of size-selected neutral cluster species, and these results differ clearly from PECD of the neutral monomer. The shifted ionization thresholds of the n-mers (n = 2, ..., 7) are shown to follow a simple linear relationship, but under intense beam expansion conditions the monomer deviates from this relationship, and the monomer electron spectra tail to below the expected monomer adiabatic ionization potential (IP). PECD measurements made in coincidence with monomer ions obtained under different beam expansion conditions were used to identify unambiguously a contribution from dissociative photoionization of larger clusters to the monomer parent mass ion yield above and below its adiabatic IP.     

Structural studies on alkylisocyanate polymers by thermal degradation tandem mass spectrometry

Homopolymers and copolymers of alkylisocyanates having n-hexyl, 2,6-dimethylheptyl, 3,7-dimethyloctyl, and (2,2-dimethyl-1,3-dioxolan-4-yl)methyl substituents underwent thermal degradation in the course of desorption electron ionization to yield trimers and monomers that were characterized in situ by tandem mass spectrometry. The trimers were trisubstituted cyanuric acids, the protonated molecules displaying a characteristic series of alkene eliminations on collision-induced dissociation to yield protonated cyanuric acid, m/ z 130. Confirmation of the identity of the pyrolysates was obtained by using two types of MS3 experiments: the reaction intermediate scan and the two-dimensional familial scan. The ion chemistry of the trimers and of the protonated monomer, the alkylisocyanate, was elucidated. Among the many interesting fragmentation processes undergone by the ionized trimers were a and 3 C-C bond cleavages and charge-remote fragmentations, which provided information on branching in the alkyl substituent. The dioxolane-containing substituent showed unique ion chemistry. The monomer distribution in the copolymers was deduced from the abundances of the various protonated trimers. The distribution was found to be random in all copolymers except that containing the dioxolane substituent.     

Fragmentation channels of K-shell excited rare-gas clusters studied by multiple-ion coincidence momentum imaging

Multiple-ion coincidence momentum imaging experiments were carried out for K-shell (1s) excited Ar clusters containing about 130 atoms and Kr clusters containing about 30, 90, and 160 atoms. The time-of-flight spectra reveal that the major products of the Coulomb explosion are singly charged ions. With increasing the number of charges generated in clusters, the momentum of monomer ions such as Ar(+) and Kr(+) increases, while that of cluster ions such as Ar(3) (+), Kr(2) (+), and Kr(3) (+) decreases. This observation indicates the site-specific decay process that the heavier ions appear in the central part of clusters. We have also investigated the momentum distribution in various fragmentation channels and the branching ratio of each channel at the Coulomb explosion. When the number N(coin) of coincidently detected ions is four, for example, the most frequent channel from Kr clusters containing 30 atoms is to emit simply four Kr(+) ions, but Kr(2) (+) ions participate in the fragmentation from the larger Kr clusters. The fragmentation channel in which two Ar(2) (+) ions are emitted becomes dominant with increasing N(coin), and the average momentum of Ar(2) (+) ion in this channel is larger than that in the channels where only single Ar(2) (+) is emitted.     

Double ionization and Coulomb explosion of the formic acid dimer by intense near-infrared femtosecond laser pulses

Ionization and fragmentation of formic acid dimers (HCOOH)(2) and (DCOOD)(2) by irradiation of femtosecond laser pulses (100 fs, 800 nm, ~1 × 10(14) W/cm(2)) were investigated by time-of-flight (TOF) mass spectrometry. In the TOF spectra, we observed fragment ions (HCOOH)H(+), (HCOOH)HCOO(+), and H(3)O(+), which were produced via the dissociative ionization of (HCOOH)(2). In addition, we found that the TOF signals of COO(+), HCOO(+), and HCOOH(+) have small but clear side peaks, indicating fragmentation with large kinetic energy release caused by Coulomb explosion. On the basis of the momentum matching among pairs of the side peaks, a Coulomb explosion pathway of the dimer dication, (HCOOH)(2)(2+) → HCOOH(+) + HCOOH(+), was identified with the total kinetic energy release of 3.6 eV. Quantum chemical calculations for energies of (HCOOH)(2)(2+) were also performed, and the kinetic energy release of the metastable dication was estimated to be 3.40 eV, showing good agreement with the observation. COO(+) and HCOO(+) signals with kinetic energies of 1.4 eV were tentatively assigned to be fragment ions through Coulomb explosion occurring after the elimination of a hydrogen atom or molecule from (HCOOH)(2)(2+). The present observation demonstrated that the formic acid dimer could be doubly ionized prior to hydrogen bond breaking by intense femtosecond laser fields.     

Fragmentation dynamics of size-selected pyrrole clusters prepared by electron impact ionization: forming a solvated dimer ion core

Structure and dynamics of size-selected charged pyrrole clusters have been studied by means of molecular beam scattering experiments and ab initio calculations. Small neutral Pyn clusters were produced in Py/He mixture expansions, and the scattering experiment with a secondary beam of He-atoms was exploited to select the neutral clusters of different sizes. The complete size-selected fragmentation patterns for the neutral dimer to the tetramer after an electron impact ionization at 70 eV were obtained from the measurements of the angular and velocity distributions at different fragment masses. All the investigated cluster sizes decay mainly to the monomer ions Py+1 (from 60 to 80% of the corresponding neutral size) and to the dimer ion Py+2 (20-30%). The trimer ions Py+3 are generated to less than 10% from the neutral trimer and tetramer. To explain the observed results, we have calculated the structures and energetics of pyrrole clusters up to the trimer for the neutral and the ionic state using DFT and PMP2 methods. The ab initio calculations show that ionized pyrrole clusters are formed with a dimeric core that is solvated by neutral pyrrole molecules. In addition, the ground and ionic state of Py-Ar complexes were calculated at CCSD(T) level with extended basis in relevance to the mixed clusters produced in supersonic expansions of Py seeded in Ar. The calculated dissociation energies of the Py-Ar and (Py-Ar)+ complexes indicate that Ar atoms are able to rapidly evaporate after ionization. The combined analysis of the fragmentation probabilities, and calculations allowed us to estimate the distribution of energy deposited in the clusters after the electron impact, which peaks above 1 eV and has a tail up to 5 eV.     

Different chemical dynamics for different conformers of biological molecules: photoionization of glycine

Single-photon ionization dynamics of two conformers of glycine is studied by classical trajectory simulations using the semiempirical PM3 potential surface in "on the fly" calculations. Initial conditions for the trajectories are weighted according to the Wigner distribution function computed for the initial vibrational ground state. Vertical ionization in the spirit of the classical Franck-Condon principle is assumed. The dynamics of the two conformers are compared during the first 10 ps. The comparison shows very different dynamical behavior for the two conformers. In particular, the chemical fragmentation pathways differ in part. Also, one of the conformers gives much higher rates of conformational transitions, while the other conformer gives larger chemical fragmentation yields. The example shows significantly different chemical dynamics for two conformers close in energy and separated by a low barrier.     

Characterization of methylation site of monomethylflavan-3-ols by liquid chromatography/electrospray ionization tandem mass spectrometry

Liquid chromatography/electrospray ionization tandem mass spectrometry (LC/ESI-MS/MS) was used for the structural characterization and differentiation of four isomeric O-monomethylated catechins (on phenolic positions) by the analysis of the fragmentation behaviour of catechin. The catechin fragmentation routes were rationalized and it is shown that several diagnostic ions such as (1,3)A(+), (1,2)B(+), and (1,4)B(+) allow the unambiguous identification of the methylated ring. The precise position of the methyl group on each ring is determined by the difference in the relative intensities of the diagnostic ions. Isomeric O-methylepicatechins were also differentiated using this methodology.     

Dissociative ionization of neon clusters Ne(n), n=3 to 14: a realistic multisurface dynamical study

The molecular dynamics with quantum transitions (MDQT) method is applied to study the fragmentation dynamics of neon clusters following vertical ionization of neutral clusters with 3 to 14 atoms. The motion of the neon atoms is treated classically, while transitions between the adiabatic electronic states of the ionic clusters are treated quantum mechanically. The potential energy surfaces are described by the diatomics-in-molecules model in a minimal basis set consisting of the effective 2p orbitals on each neon atom for the missing electron. The fragmentation mechanism is found to be rather explosive, with a large number of events where several atoms simultaneously dissociate. This is in contrast with evaporative atom by atom fragmentation. The dynamics are highly nonadiabatic, especially at shorter times and for the larger clusters. Initial excitation of the neutral clusters does not affect the fragmentation pattern. The influence of spin-orbit coupling is also examined and found to be small, except for the smaller size systems for which the proportion of the Ne+ fragment is increased up to 43%. From the methodological point of view, most of the usual momentum adjustment methods at hopping events are shown to induce nonconservation of the total nuclear angular momentum because of the nonzero electronic to rotation coupling in these systems. A new method for separating out this coupling and enforcing the conservation of the total nuclear momentum is proposed. It is applied here to the MDQT method of Tully but it is very general and can be applied to other surface hopping methods.     

Structural and spectroscopic study of the LiRb molecule beyond the Born-Oppenheimer approximation

Adiabatic and diabatic potential energy curves and the permanent and transition dipole moments of the low-lying electronic states of the LiRb molecule dissociating into Rb(5s, 5p, 4d, 6s, 6p, 5d, 7s, 6d) + Li(2s, 2p) have been investigated. The molecular calculations are performed with an ab initio approach based on nonempirical pseudopotentials for Rb(+) and Li(+) cores, parametrized l-dependent core polarization potentials and full configuration interaction calculations. The derived spectroscopic constants (R(e), D(e), T(e), ω(e), ω(e)x(e), and B(e)) of the ground state and lower excited states are in good agreement with the available theoretical works. However, the 8-10(1)Σ(+), 8-10(3)Σ(+), 6(1,3)Π, and 3(1,3)Δ excited states are studied for the first time. In addition, to the potential energy, accurate permanent and transition dipole moments have been determined for a wide interval of internuclear distances. The permanent dipole moment of LiRb has revealed ionic characters both relating to electron transfer and yielding Li(-)Rb(+) and Li(+)Rb(-) arrangements. The diabatic potential energy for the (1,3)Σ(+), (1,3)Π, and (1,3)Δ symmetries has been performed for this molecule for the first time. The diabatization method is based on variational effective Hamiltonian theory and effective metric, where the adiabatic and diabatic states are connected by an appropriate unitary transformation.     

Single photon ionization of hydrogen bonded clusters with a soft x-ray laser: (HCOOH)x and (HCOOH)y(H2O)z

Pure, neutral formic acid (HCOOH)n+1 clusters and mixed (HCOOH)(H2O) clusters are investigated employing time of flight mass spectroscopy and single photon ionization at 26.5 eV using a very compact, capillary discharge, soft x-ray laser. During the ionization process, neutral clusters suffer little fragmentation because almost all excess energy above the vertical ionization energy is taken away by the photoelectron, leaving only a small part of the photon energy deposited into the (HCOOH)n+1+ cluster. The vertical ionization energy minus the adiabatic ionization energy is enough excess energy in the clusters to surmount the proton transfer energy barrier and induce the reaction (HCOOH)n+1+-->(HCOOH)nH+ +HCOO making the protonated (HCOOH)nH+ series dominant in all data obtained. The distribution of pure (HCOOH)nH+ clusters is dependent on experimental conditions. Under certain conditions, a magic number is found at n=5. Metastable dissociation rate constants of (HCOOH)nH+ are measured in the range (0.1-0.8)x10(4) s(-1) for cluster sizes 4相似文献   

C60 in intense short pulse laser fields down to 9 fs: excitation on time scales below e-e and e-phonon coupling

The interaction of C60 fullerenes with 765-797 nm laser pulses as short as 9 fs at intensities of up to 3.7 x 10(14) W cm(-2) is investigated with photoion spectroscopy. The excitation time thus addressed lies well below the characteristic time scales for electron-electron and electron-phonon couplings. Thus, energy deposition into the system is separated from energy redistribution among the various electronic and nuclear degrees of freedom. Insight into fundamental photoinduced processes such as ionization and fragmentation is obtained from the analysis of the resulting mass spectra as a function of pulse duration, laser intensity, and time delay between pump and probe pulses, the latter revealing a memory effect for storing electronic energy in the system with a relaxation time of about 50 fs. Saturation intensities and relative abundances of (multiply charged) parent and fragment ions (C60(q+), q=1-6) are fingerprints for the ionization and fragmentation mechanisms. The observations indicate that for final charge states q>1 the well known C60 giant plasmon resonance is involved in creating ions and a significant amount of large fragments even with 9 fs pulses through a nonadiabatic multielectron dynamics. In contrast, for energetic reasons singly charged ions are generated by an essentially adiabatic single active electron mechanism and negligible fragmentation is found when 9 fs pulses are used. These findings promise to unravel a long standing puzzle in understanding C60 mass spectra generated by intense femtosecond laser pulses.     

Ionization and fragmentation of solid C60 by femtosecond laser ablation

Ionization and fragmentation of solid C(60) dispersed on a silicon plate are investigated by femtosecond laser ablation. Bimodal mass distribution with large fragment ions C(60-2n) (+) (0< or =n< or =11) and small fragment ions C(n) (+) (13< or =n< or =28), formation of dimer ion (C(60))(2) (+), and delayed ionization of C(60) have been observed as reported in gas phase experiments with nanosecond laser excitation. Metastable dissociation of small fragment ions C(n) (+) has been observed for the first time, which suggests different structures of fragment ions compared with those of well-studied carbon cluster ions. From these observations, strong coupling of laser energy to electronic degrees of freedom of solid C(60) has been revealed for femtosecond laser ablation as compared with excitation in the gas phase.     

Electron impact fragmentation of size-selected krypton clusters

Clusters of krypton are generated in a supersonic expansion and size selected by deflection from a helium target beam. By measuring angular distributions for different fragment masses and time-of-flight distributions for fixed deflection angles and fragment masses, the complete fragmentation patterns for electron impact ionization at 70 eV are obtained from the dimer to the heptamer. For each of the neutral Kr(n) clusters studied, the main fragment is the monomer Kr(+) ion with a probability f(n)(1) > 90%. The probability of observing dimer Kr(2)(+) ions is much smaller than expected for each initial cluster size. The trimer ion Kr(3)(+) appears first from the neutral Kr(5), and its fraction increases with increasing neutral cluster size n, but is always much smaller than that of the monomer or dimer. For neutral Kr(7), all possible ion fragments are observed, but the monomer still represents 90% of the overall probability and fragments with n > 3 contribute less than 1% of the total. Aspects of the Kr(n) cluster ionization process and the experimental measurements are discussed to provide possible reasons for the surprisingly high probability of observing fragmentation to the Kr(+) monomer ion.     

ToF-SIMS Analysis of Adsorbed Proteins: Principal Component Analysis of the Primary Ion Species Effect on the Protein Fragmentation Patterns

In time-of-flight secondary ion mass spectrometry (ToF-SIMS), the choice of primary ion used for analysis can influence the resulting mass spectrum. This is because different primary ion types can produce different fragmentation pathways. In this study, analysis of single-component protein monolayers were performed using monatomic, tri-atomic, and polyatomic primary ion sources. Eight primary ions (Cs(+), Au(+), Au(3) (+), Bi(+), Bi(3) (+), Bi(3) (++), C(60) (+)) were used to examine to the low mass (m/z < 200) fragmentation patterns from five different proteins (bovine serum albumin, bovine serum fibrinogen, bovine immunoglobulin G and chicken egg white lysozyme) adsorbed onto mica surfaces. Principal component analysis (PCA) processing of the ToF-SIMS data showed that variation in peak intensity caused by the primary ions was greater than differences in protein composition. The spectra generated by Cs(+), Au(+) and Bi(+) primary ions were similar, but the spectra generated by monatomic, tri-atomic and polyatomic primary ion ions varied significantly. C(60) primary ions increased fragmentation of the adsorbed proteins in the m/z < 200 region, resulting in more intense low m/z peaks. Thus, comparison of data obtained by one primary ion species with that obtained by another primary ion species should be done with caution. However, for the spectra generated using a given primary ion beam, discrimination between the spectra of different proteins followed similar trends. Therefore, a PCA model of proteins created with a given ion source should only be applied to datasets obtained using the same ion source. The type of information obtained from PCA depended on the peak set used. When only amino acid peaks were used, PCA was able to identify the relationship between proteins by their amino acid composition. When all peaks from m/z 12-200 were used, PCA separated proteins based on a ratio of C(4)H(8)N(+) to K(+) peak intensities. This ratio correlated with the thickness of the protein films and Bi(1) (+) primary ions produced the most surface sensitive spectra.     

Decomposition channels for multiply charged ammonia clusters

Multiply charged ammonia cluster ions are produced by adiabatic nozzle expansion and subsequent ionization by electron impact. They are analyzed in a double focussing sector field mass spectrometer (reversed geometry). Doubly charged clusters are only detected above a critical size of 51 and triply charged clusters above 121. Some of these multiply charged ions decay via metastable dissociation processes in the experimental time window accessible. Doubly charged ammonia clusters with sizes ofn≧51 lose one neutral monomer or, roughly ten times less probable, two neutral monomers. Conversely, triply charged ammonia clusters with sizes 110≦n≦120 show an extremely asymmetric Coulomb dissociation resulting in doubly charged cluster ions of about 90% of the initial mass     

Photodissociation of CCH: classical trajectory calculations involving seven electronic states

The photodissociation dynamics of ethynyl radical, C(2)H, involving seven electronic states is studied by classical trajectory calculations. Initial values of the trajectories are selected based on relative absorption intensities calculated by Mebel et al. The energies and the derivatives are interpolated by three-dimensional cubic spline interpolator using an extended data pool. Mean square errors and standard deviations in interpolation of energies for 450 data points are found to be in the range 3.1 x 10(-6)-1.4 x 10(-5) and 1.7 x 10(-3)-3.8 x 10(-3) hartrees, respectively. The photofragments of C(2) and H are produced mainly in the X (1)Sigma(g) (+), a (3)Pi(u), b (3)Sigma(g) (-), c (3)Sigma(u) (+), A (1)Pi(u), B (1)Delta(g) electronic states of C(2) as product. The avoided crossings do not appear to be in the main dissociation pathways. The internal distributions are in good accord with the experimental results where comparison is possible, suggesting that the fragmentation mechanism of C(2)H(2) into C(2) and H is a two step process involving C(2)H radical as an intermediate with a life time long enough to allow complete collection of the phase space in the experiments.     

An Anderson impurity model for efficient sampling of adiabatic potential energy surfaces of transition metal complexes

We present a model intended for rapid sampling of ground and excited state potential energy surfaces for first-row transition metal active sites. The method is computationally inexpensive and is suited for dynamics simulations where (1) adiabatic states are required "on-the-fly" and (2) the primary source of the electronic coupling between the diabatic states is the perturbative spin-orbit interaction among the 3d electrons. The model Hamiltonian we develop is a variant of the Anderson impurity model and achieves efficiency through a physically motivated basis set reduction based on the large value of the d-d Coulomb interaction U(d) and a Lanczos matrix diagonalization routine to solve for eigenvalues. The model parameters are constrained by fits to the partial density of states obtained from ab initio density functional theory calculations. For a particular application of our model we focus on electron transfer occurring between cobalt ions solvated by ammonium, incorporating configuration interaction between multiplet states for both metal ions. We demonstrate the capability of the method to efficiently calculate adiabatic potential energy surfaces and the electronic coupling factor we have calculated compares well to previous calculations and experiment. (     

Photoionization and dissociation of the monoterpene limonene: mass spectrometric and computational investigation

The photoionization of the monoterpene limonene has been studied using tunable vacuum ultraviolet synchrotron radiation in the region from the threshold for ionization of the parent molecule up to 15.5 eV. The adiabatic ionization energy of limonene is derived from photoionization efficiency spectrum and found to be 8.27 eV, compared with the density functional theory calculations which yields a value of 8.08 eV (B3LYP/6-311++G). Primary dissociation pathways of the parent molecule ions are investigated by experimental observations and theoretical calculations. Most of the fragmentation channels occur via a rearrangement reaction prior to dissociation. Transition structures and intermediates for those isomerization processes are also determined.     

Nonadiabatic effects in the H+D2 reaction

The state-to-state dynamics of the H+D2 reaction is studied by the reactant-product decoupling method using the double many-body expansion potential energy surface. Two approaches are compared: one uses only the lowest adiabatic sheet while the other employs both coupled diabatic sheets. Rotational distributions for the reaction H+D2 (upsilon = 0, j = 0)-->HD(upsilon' = 3, j')+D are obtained at eight different collision energies between 1.49 and 1.85 eV; no significant difference are found between the two approaches. Initial state-selected total reaction probabilities and integral cross sections are also given for energies ranging from 0.25 up to 2.0 eV with extremely small differences being observed between the two sets of results, thus showing that the nonadiabatic effects in the title reaction are negligible at least for small energies below 2.0 eV.