Multicoefficient Gaussian-3 calculation of the rate constant for the OH + CH4 reaction and its 12C/13C kinetic isotope effect with emphasis on the effects of coordinate system and torsional treatment

Rate constants and (12)C/(13)C kinetic isotope effects are calculated by direct dynamics for the OH + CH(4) --> H(2)O + CH(3) reaction. The electronic structure calculations required to generate the implicit potential energy surface were carried out by the high-level multicoefficient Gaussian-3/version-3 (MCG3) method and compared to two other multilevel methods, MC3BB and MC3MPW, and three density functional methods, M06-2X, BB1K, and MPW1K. The rate constants and (12)C/(13)C kinetic isotope effects are shown to depend strongly on the coordinate system used to calculate the frequencies as well as on the method used to account for the torsional anharmonicity of the lowest-frequency vibrational mode of the generalized transition states.     

Testing the performance of density functionals for the calculation of energetic properties of complex-forming radical-molecule reactions

The performance of some popular and some more recent density functional methods for the calculation of energies of stationary points on the potential surfaces of radical-molecule reactions was examined. The functionals studied are B3-LYP, BH&H, BH&H-LYP, MPW1K, MPWB1K, TPSS, TPSSh, BB1K, M05 and M05-2X, in conjunction with nine different AO basis sets. The reaction energies, barrier heights and the relative energies of the pre-and post-reaction complexes were compared with those obtained at the CCSD(T)/CBS limit for the reactions of OH radicals with HOOH and CH₃OOH. Very poor barrier heights are provided by the B3-LYP, TPSS and TPSSh functionals. The best overall performance was obtained with the BB1K, MPW1K and MPWB1K functionals. In these reactions all of the studied functionals provide converged results only if they are used with large basis sets like aug-cc-pVTZ and def2-TZVP. The data show that before relying on a functional for a specific reaction, it is desirable to make some test calculations on the performance. The same functional can predict some relative energies very well and some others very poorly even in systems including chemically similar reactants.     

Thermochemical kinetics of hydrogen-atom transfers between methyl, methane, ethynyl, ethyne, and hydrogen

Saddle point properties of three symmetric and one asymmetric hydrogen transfer and the energy of reaction of the asymmetric reactions are investigated in the present work. These reactions were calculated by various density functionals, many of which were developed in recent years, by coupled cluster theory, and by multicoefficient correlation methods based on wave function theory. Instead of comparing calculated results to "semi-experimental" values, we compared them to very accurate theoretical values (e.g., to values obtained by the Weizmann-1 method). Coupled cluster theory and the multicoefficient correlation methods MC-QCISD/3 and MCQCISD-MPW are very accurate for these reactions with mean unsigned errors below 0.94 kcal/mol. Diagnostics for multireference character add additional reliability to these results. The newly developed hybrid density functional M06-2X shows very good performance for these reactions with a mean unsigned error of only 0.77 kcal/mol; the BHandHLYP, MPW1K, and BB1K density functionals, can also predict these reactions well with mean unsigned errors less than 1.42 kcal/mol.     

Benchmark database of barrier heights for heavy atom transfer, nucleophilic substitution, association, and unimolecular reactions and its use to test theoretical methods

A benchmark database of forward and reverse barrier heights for 19 non-hydrogen-transfer reactions has been developed by using Weizmann 1 calculations, and 29 DFT methods and 6 ab initio wave-function theory (WFT) methods have been tested against the new database as well as against an older database for hydrogen atom transfer reactions. Among the tested hybrid DFT methods without kinetic energy density, MPW1K is the most accurate model for calculations of barrier heights. Among the tested hybrid meta DFT methods, BB1K and MPWB1K are the two most accurate models for the calculations of barrier heights. Overall, the results show that BB1K and MPWB1K are the two best DFT methods for calculating barrier heights, followed in order by MPW1K, MPWKCIS1K, B1B95, MPW1B95, BH and HLYP, B97-2, mPW1PW91, and B98. The popular B3LYP method has a mean unsigned error four times larger than that of BB1K. Of the methods tested, QCISD(T) is the best ab initio WFT method for barrier height calculations, and QCISD is second best, but QCISD is outperformed by the BB1K, MPWB1K, MPWKCIS1K, and MPW1K methods.     

Benchmark of density functional theory methods on the prediction of bond energies and bond distances of noble-gas containing molecules

We have tested three pure density functional theory (DFT) functionals, BLYP, MPWPW91, MPWB95, and ten hybrid DFT functionals, B3LYP, B3P86, B98, MPW1B95, MPW1PW91, BMK, M05-2X, M06-2X, B2GP-PLYP, and DSD-BLYP with a series of commonly used basis sets on the performance of predicting the bond energies and bond distances of 31 small neutral noble-gas containing molecules. The reference structures were obtained using the CCSD(T)∕aug-cc-pVTZ theory and the reference energies were based on the calculation at the CCSD(T)∕CBS level. While in general the hybrid functionals performed significantly better than the pure functionals, our tests showed a range of performance by these hybrid functionals. For the bond energies, the MPW1B95∕6-311+G(2df,2pd), BMK∕aug-cc-pVTZ, B2GP-PLYP∕aug-cc-pVTZ, and DSD-BLYP∕aug-cc-pVTZ methods stood out with mean unsigned errors of 2.0-2.3 kcal∕mol per molecule. For the bond distances, the MPW1B95∕6-311+G(2df,2pd), MPW1PW91∕6-311+G(2df,2pd), and B3P86∕6-311+G(2df,2pd), DSD-BLYP∕6-311+G(2df,2pd), and DSD-BLYP∕aug-cc-pVTZ methods stood out with mean unsigned errors of 0.008-0.013 A? per bond. The current study showed that a careful selection of DFT functionals is very important in the study of noble-gas chemistry, and the most recommended methods are MPW1B95∕6-311+G(2df,2pd) and DSD-BLYP∕aug-cc-pVTZ.     

Design of density functionals that are broadly accurate for thermochemistry, thermochemical kinetics, and nonbonded interactions

This paper develops two new hybrid meta exchange-correlation functionals for thermochemistry, thermochemical kinetics, and nonbonded interactions. The new functionals are called PW6B95 (6-parameter functional based on Perdew-Wang-91 exchange and Becke-95 correlation) and PWB6K (6-parameter functional for kinetics based on Perdew-Wang-91 exchange and Becke-95 correlation). The resulting methods were comparatively assessed against the MGAE109/3 main group atomization energy database, against the IP13/3 ionization potential database, against the EA13/3 electron affinity database, against the HTBH38/4 and NHTBH38/04 hydrogen-transfer and non-hydrogen-transfer barrier height databases, against the HB6/04 hydrogen bonding database, against the CT7/04 charge-transfer complex database, against the DI6/04 dipole interaction database, against the WI7/05 weak interaction database, and against the new PPS5/05 pi-pi stacking interaction database. From the assessment and comparison of methods, we draw the following conclusions, based on an analysis of mean unsigned errors: (i) The PW6B95, MPW1B95, B98, B97-1, and TPSS1KCIS methods give the best results for a combination of thermochemistry and nonbonded interactions. (ii) PWB6K, MPWB1K, BB1K, MPW1K, and MPW1B95 give the best results for a combination of thermochemical kinetics and nonbonded interactions. (iii) PWB6K outperforms the MP2 method for nonbonded interactions. (iv) PW6B95 gives errors for main group covalent bond energies that are only 0.41 kcal (as measured by mean unsigned error per bond (MUEPB) for the MGAE109 database), as compared to 0.56 kcal/mol for the second best method and 0.92 kcal/mol for B3LYP.     

A new database and benchmark of the bond energies of noble-gas-containing molecules

We have developed a new database of structures and bond energies of 59 noble-gas-containing molecules. The structures were calculated by CCSD(T)/aug-cc-pVTZ methods and the bond energies were obtained using the CCSD(T)/complete basis set method. Many wavefunction-based and density functional theory methods have been benchmarked against the 59 accurate bond energies. Our results show that the MPW1B95, B2GP-PLYP, and DSD-BLYP functionals with the aug-cc-pVTZ basis set excel in predicting the bond energies of noble-gas molecules with mean unsigned errors (MUEs) of 2.0 to 2.1 kcal/mol. When combinations of Dunning's basis sets are used, the MPW1B95, B2GP-PLYP, DSD-BLYP, and BMK functionals give significantly lower MUEs of 1.6 to 1.9 kcal/mol. Doubly hybrid methods using B2GP-PLYP and DSD-BLYP functionals and MP2 calculation also provide satisfactory accuracy with MUEs of 1.4 to 1.5 kcal/mol. If the Ng bond energies and the total atomization energies of a group of 109 main-group molecules are considered at the same time, the MPW1B95/aug-cc-pVTZ single-level method (MUE = 2.7 kcal/mol) and the B2GP-PLYP and DSD-PLYP functionals with combinations of basis sets or using the doubly hybrid method (MUEs = 1.9-2.2 kcal/mol) give the overall best result.     

Ab initio thermochemistry and kinetics for carbon-centered radical addition and beta-scission reactions

A quantitative comparison of ab initio calculated rate coefficients using five computational methods and five different approaches of treating hindered internal rotation and tunneling with experimental values of rate coefficients for nine carbon-centered radical additions/beta scissions at 300, 600, and 1000 K is performed. The high-accuracy compound methods, CBS-QB3 and G3B3, and the density functionals, MPW1PW91, BB1K, and BMK, have been evaluated using the following approaches: (i) the harmonic oscillator approximation; (ii) the hindered internal rotor approximation for the internal rotation about the forming/breaking bond in the transition state and product; and the hindered internal rotation approximation combined with (iii) Wigner, (iv) Skodje and Truhlar, and (v) Eckart zero-curvature tunneling corrections. The density functional theory (DFT) based values for beta-scission rate coefficients deviate significantly from the experimental ones at 300 K, and the DFT methods do not accurately predict the equilibrium coefficient. The hindered rotor approximation offers a significant improvement in the agreement with experimental rate coefficients as compared to the harmonic oscillator treatment, especially at higher temperatures. Tunneling correction factors are smaller than 1.40 at 300 K and 1.03 at 1000 K. For both the CBS-QB3 method, including the hindered rotor treatment but excluding tunneling corrections, and the G3B3 method, including hindered rotor and Eckart tunneling corrections, a mean factor of deviation with experimentally observed values of 3 is found.     

Benchmarking density functional methods against the S66 and S66x8 datasets for non-covalent interactions

Dispersion-corrected density functional theory is assessed on the new S66 and S66x8 benchmark sets for non-covalent interactions. In total, 17 different density functionals are evaluated. Two flavors of our latest additive London-dispersion correction DFT-D3 and DFT-D3(BJ), which differ in their short-range damping functions, are tested. In general, dispersion corrections are again shown to be crucial to obtain reliable non-covalent interaction energies and equilibrium distances. The corrections strongly diminish the performance differences between the functionals, and in summary most dispersion-corrected methods can be recommended. DFT-D3 and DFT-D3(BJ) also yield similar results but for most functionals and intermolecular distances, the rational Becke-Johnson scheme performs slightly better. Particularly, the statistical analysis for S66x8, which covers also non-equilibrium complex geometries, shows that the Minnesota class of functionals is also improved by the D3 scheme. The best methods on the (meta-)GGA or hybrid- (meta-)GGA level are B97-D3, BLYP-D3(BJ), PW6B95-D3, MPW1B95-D3 and LC-ωPBE-D3. Double-hybrid functionals are the most accurate and robust methods, and in particular PWPB95-D3 and B2-PLYP-D3(BJ) can be recommended. The best DFT-D3 and DFT-D3(BJ) approaches are competitive to specially adapted perturbation methods and clearly outperform standard MP2. Comparisons between S66, S22 and parts of the GMTKN30 database show that the S66 set provides statistically well-behaved data and can serve as a valuable tool for, for example, fitting purposes or cross-validation of other benchmark databases.     

Validation of electronic structure methods for isomerization reactions of large organic molecules

In this work the ISOL24 database of isomerization energies of large organic molecules presented by Huenerbein et al. [Phys. Chem. Chem. Phys., 2010, 12, 6940] is updated, resulting in the new benchmark database called ISOL24/11, and this database is used to test 50 electronic model chemistries. To accomplish the update, the very expensive and highly accurate CCSD(T)-F12a/aug-cc-pVDZ method is first exploited to investigate a six-reaction subset of the 24 reactions, and by comparison of various methods with the benchmark, MCQCISD-MPW is confirmed to be of high accuracy. The final ISOL24/11 database is composed of six reaction energies calculated by CCSD(T)-F12a/aug-cc-pVDZ and 18 calculated by MCQCISD-MPW. We then tested 40 single-component density functionals (both local and hybrid), eight doubly hybrid functionals, and two other methods against ISOL24/11. It is found that the SCS-MP3/CBS method, which is used as benchmark for the original ISOL24, has an MUE of 1.68 kcal mol(-1), which is close to or larger than some of the best tested DFT methods. Using the new benchmark, we find ωB97X-D and MC3MPWB to be the best single-component and doubly hybrid functionals respectively, with PBE0-D3 and MC3MPW performing almost as well. The best single-component density functionals without molecular mechanics dispersion-like terms are M08-SO, M08-HX, M05-2X, and M06-2X. The best single-component density functionals without Hartree-Fock exchange are M06-L-D3 when MM terms are included and M06-L when they are not.     

How to compute isomerization energies of organic molecules with quantum chemical methods

The reaction energies for 34 typical organic isomerizations including oxygen and nitrogen heteroatoms are investigated with modern quantum chemical methods that have the perspective of also being applicable to large systems. The experimental reaction enthalpies are corrected for vibrational and thermal effects, and the thus derived "experimental" reaction energies are compared to corresponding theoretical data. A series of standard AO basis sets in combination with second-order perturbation theory (MP2, SCS-MP2), conventional density functionals (e.g., PBE, TPSS, B3-LYP, MPW1K, BMK), and new perturbative functionals (B2-PLYP, mPW2-PLYP) are tested. In three cases, obvious errors of the experimental values could be detected, and accurate coupled-cluster [CCSD(T)] reference values have been used instead. It is found that only triple-zeta quality AO basis sets provide results close enough to the basis set limit and that sets like the popular 6-31G(d) should be avoided in accurate work. Augmentation of small basis sets with diffuse functions has a notable effect in B3-LYP calculations that is attributed to intramolecular basis set superposition error and covers basic deficiencies of the functional. The new methods based on perturbation theory (SCS-MP2, X2-PLYP) are found to be clearly superior to many other approaches; that is, they provide mean absolute deviations of less than 1.2 kcal mol-1 and only a few (<10%) outliers. The best performance in the group of conventional functionals is found for the highly parametrized BMK hybrid meta-GGA. Contrary to accepted opinion, hybrid density functionals offer no real advantage over simple GGAs. For reasonably large AO basis sets, results of poor quality are obtained with the popular B3-LYP functional that cannot be recommended for thermochemical applications in organic chemistry. The results of this study are complementary to often used benchmarks based on atomization energies and should guide chemists in their search for accurate and efficient computational thermochemistry methods.     

Reactions of hydrogen atom with hydrogen peroxide

Rate coefficients are calculated using canonical variational transition state theory with multidimensional tunneling (CVT/SCT) for the reactions H + H2O2 --> H2O + OH (1a) and H + H2O2 --> HO2 + H2 (1b). Reaction barrier heights are determined using two theoretical approaches: (i) comparison of parametrized rate coefficient calculations employing CVT/SCT to experiment and (ii) high-level ab initio methods. The evaluated experimental data reveal considerable variations of the barrier height for the first reaction: although the zero-point-exclusive barrier for (1a) derived from the data by Klemm et al. (First Int. Chem. Kinet. Symposium 1975, 61) is 4.6 kcal/mol, other available measurements result in a higher barrier of 6.2 kcal/mol. The empirically derived zero-point-exclusive barrier for (1b) is 10.4 kcal/mol. The electronic structure of the system at transition state geometries in both reactions was found to have "multireference" character; therefore special care was taken when analyzing electronic structure calculations. Transition state geometries are optimized by multireference perturbation theory (MRMP2) with a variety of one-electron basis sets, and by a multireference coupled cluster (MR-AQCCSD) method. A variety of single-reference benchmark-level calculations have also been carried out; included among them are BMC-CCSD, G3SX(MP3), G3SX, G3, G2, MCG3, CBS-APNO, CBS-Q, CBS-QB3, and CCSD(T). Our data obtained at the MRMP2 level are the most complete; the barrier height for (1a) using MRMP2 at the infinite basis set limit is 4.8 kcal/mol. Results are also obtained with midlevel single-reference multicoefficient correlation methods, such as MC3BB, MC3MPW, MC-QCISD/3, and MC-QCISD-MPWB, and with a variety of hybrid density functional methods, which are compared with high-level theory. On the basis of the evaluated experimental values and the benchmark calculations, two possible recommended values are given for the rate coefficients.     

An assessment of theoretical procedures for predicting the thermochemistry and kinetics of hydrogen abstraction by methyl radical from benzene

The reaction enthalpy (298 K), barrier (0 K), and activation energy and preexponential factor (600-800 K) have been examined computationally for the abstraction of hydrogen from benzene by the methyl radical, to assess their sensitivity to the applied level of theory. The computational methods considered include high-level composite procedures, including W1, G3-RAD, G3(MP2)-RAD, and CBS-QB3, as well as conventional ab initio and density functional theory (DFT) methods, with the latter two classes employing the 6-31G(d), 6-31+G(d,p) and/or 6-311+G(3df,2p) basis sets, and including ZPVE/thermal corrections obtained from 6-31G(d) or 6-31+G(d,p) calculations. Virtually all the theoretical procedures except UMP2 are found to give geometries that are suitable for subsequent calculation of the reaction enthalpy and barrier. For the reaction enthalpy, W1, G3-RAD, and URCCSD(T) give best agreement with experiment, while the large-basis-set DFT procedures slightly underestimate the endothermicity. The reaction barrier is slightly more sensitive to the choice of basis set and/or correlation level, with URCCSD(T) and the low-cost BMK method providing values in close agreement with the benchmark G3-RAD value. Inspection of the theoretically calculated rate parameters reveals a minor dependence on the level of theory for the preexponential factor. There is more sensitivity for the activation energy, with a reasonable agreement with experiment being obtained for the G3 methods and the hybrid functionals BMK, BB1K, and MPW1K, especially in combination with the 6-311+G(3df,2p) basis set. Overall, the high-level G3-RAD composite procedure, URCCSD(T), and the cost-effective DFT methods BMK, BB1K, and MPW1K give the best results among the methods assessed for calculating the thermochemistry and kinetics of hydrogen abstraction by the methyl radical from benzene.     

Electronic structures of 4d transition metal monoxides by density functional theory

Bond distances, dissociation energies, ionization potentials and electron affinities of 4d transition metal monoxides from YO to CdO and their positive and negative ions were studied by use of density functional methods B3LYP, BLYP, B3PW91, BPW91, B3P86, BP86, SVWN, MPW1PW91 and PBE1PBE. It was found that calculated properties are highly dependent on the functionals employed, especially for dissociation energy. For most neutral species, pure density functionals BLYP, BPW91 and BP86 have good performance in predicting dissociation energy than hybrid density functionals B3LYP, B3PW91 and B3P86. In addition, BLYP gives the largest bond distance compared with other density functional methods, while SVWN gives shortest bond distance, largest dissociation energy and electron affinity. For the ground state, the spin multiplicity of the charged species can be obtained by ± 1 of their corresponding neutral species.     

Comparative DFT study on the <Emphasis Type="Italic">α</Emphasis>-glycosidic bond in reactive species of galactosyl diphosphates

Correct prediction of the structure and energetics along the reaction pathway of the formation or dissociation of the glycosidic bond in sugar phosphates is crucial for the understanding of catalytic mechanism and for the determination of transition state structures of sugar-phosphate processing enzymes. The performance of seven density functional theory (DFT) methods (BLYP, B3LYP, MPW1PW91, MPW1K, MPWB1K, M05 and M05-2X) and two wave function methods (HF and MP2) was tested using four structural models with the activated sugar-phosphate α-glycosidic linkage. The models were chosen based on the crystal structure of the retaining glycosyltransferase LgtC complex with methyl α-d-galactopyranose diphosphate and its 2-fluoro derivative. Results of the MP2 method were used as a benchmark for the other methods. Two structural trends were observed in the calculations: predicted length of the activated C1-O1 glycosidic bond of 1.49–1.63 Å was significantly larger than values of a standard C1-O1 glycosidic bond in crystal structures of carbohydrates (1.39–1.48 Å), and the calculated value depended on the DFT method used. The MPW1K, M05 and M05-2X functionals provided results in closest agreement with those from the MP2 method, the difference being less than 0.02 Å in the calculated glycosidic bond lengths. On the contrary, the BLYP and B3LYP functionals failed to predict sugar diphosphate in the (-sc) conformation as a stable structure. Instead, the only stationary points localized along the C1-O1 dissociation coordinate were oxocarbenium ions at the distance of approximately 2.8 Å. The M05-2X, MPW1K and MPWB1K functionals gave the most reasonable prediction of the thermochemical kinetic parameters, where the formation of the oxocarbenium ion has a slightly endothermic character (0.4–1.7 kJ mol^?1) with an activation barrier of 7.9–9.2 kJ mol^?1.     

XYG3 and XYGJ-OS performances for noncovalent binding energies relevant to biomolecular structures

XYG3 and XYGJ-OS doubly hybrid density functionals (DHDFs) are applied to calculate intermolecular interaction energies of biological relevance. The results are compared with those of the other types of DHDFs (MC3BB and B2PLYP), as well as their dispersion corrected variants (MC3BB-D B2PLYP-D, and B2PLYP-D3), in addition to those obtained from B3LYP, B3LYP-D and B3LYP-D3. The reference data are taken from the S22, S22x5 and JSCH-2005 benchmark sets consisting mainly of DNA base pairs and amino acid pairs. The overall good agreement with the reference values of the extrapolated CCSD(T) complete basis set limit suggests that the XYG3 and XYGJ-OS functionals are valuable tools for applications in biochemistry.     

Ring-opening radical clock reactions: many density functionals have difficulty keeping time

The ability of several density-functional theory methods to describe the kinetics and energetics of a series of ring-opening reactions of cyclopropyl and cyclobutyl-type radicals was explored. PBE, B971 and B3LYP perform quite well in their ability to replicate experiment, based upon the ring opening of cyclopropylcarbinyl, two α-trialkylsilyloxycyclopropylmethyl radicals, pentamethylcyclopropylcarbinyl, cyclobutylcarbinyl and 1-cyclobutylethylcarbinyl. The other functionals tested, which includes BLYP, CAM-B3LYP, BHandHLYP, B2PLYP and B2PLYP-D, as well as functionals designed for kinetics applications, namely MPW1K, BMK and M06-2X, all perform poorly. The latter of these functionals display some integration grid dependencies.