The modern mass spectrometer—a complete chemical laboratory

Using nitrobenzene as an example, various ways in which a contemporary mass spectrometer can be utilized to yield a wealth of information about the compound studied are reviewed. Applying a variety of different techniques and procedures, in addition to the conventional low resolution mass spectrum, the following nitrobenzene spectra have been obtained: collision induced dissociation mass spectrum, mass analysed ion kinetic energy spectra, collision induced dissociation mass analysed ion kinetic energy spectra, spectra obtained at constant B/E, spectra obtained at constant B²/E, high voltage scans of metastable ion fragmentation processes, consecutive fragmentations in different field free regions, charge exchange mass spectra, charge stripping mass spectra, doubly charged ion mass spectra, chemical ionization mass spectra, negative ion mass spectra, negative ion mass analysed ion kinetic energy spectra, negative ion mass analysed ion kinetic energy collision induced dissociation spectra, charge inversion spectra, etc. The complementary types of information available from the above studies are discussed to show the unique versatility of mass spectrometry as a technique for the examination of organic compounds.     

The mass spectrometry of polychlorinated dibenzo-p-dioxins

The negative ion chemical ionization mass spectra of polychlorinated dibenzo-p-dioxins using oxygen, methane and methane/oxygen are reported together with their methane positive ion chemical ionization mass spectra and conventional electron impact spectra. The methane/oxygen negative ion chemical ionization mass spectra proved to be the most useful of the negative ion spectra for structure determination.     

Mechanisms of mass spectrometric fragmentations: X–Interaction between remote or-groups in decalin-1,5-diols and their dimethyl ethers

The mass spectra of the five stereoisomers of decalin-1,5-diol and its dimethyl ether have been investigated. The differences in the mass spectra of stereoisomers I to III with a trans- decalin ting system are small. The differences are much larger in the mass spectra of the two isomers IV and V of the cis-decalin series and the elimination of CH₂O, formed by interaction between the two methoxy groups, from the molecular ion is only observed in the mass spectrum of Vb.     

Mass spectra of geometrical isomers: The isomeric 3- and 7-cyclohexyl-2-norbornanols

The mass spectra of isomeric 3- and 7-cyclohexyl-2-norbornanols have been studied. The 3-substituted norbornanols give very similar mass spectra, whereas large differences were observed between the mass spectra of 7-syn and 7-anti isomers. While the mass spectra of these bicyclic alcohols show extensive rearrangements to give rise to many odd-electron ions, the Wagner-Meerwein rearrangement of the molecular ion prior to fragmentation or during the process of dehydration is not important. The origins and the mechanisms for the formation of some major ions are discussed in terms of low voltage spectra, defocused metastables and their relative abundances, and ionization or appearance potentials of the ions of interest.     

Charge-Reversal mass spectra of enolate ions of some open-chain and cyclic ketones for structure identification

The charge-reversal (CR) mass spectra of the enolate ions of heptanal and ten isomeric heptanones, of cyclohexanone, of cycloheptanone, of isomeric methylcyclohexanones, of isomeric ethylcyclohexanones and of the iso meric monoterpene ketones camphor, fenchone, pulegone and thujone were obtained by deprotonation using OH^? under chemical ionization conditions followed by collision of the [M ? H] ^? ions with helium in the second field-free region of a VG ZAB 2F mass spectrometer. The CR mass spectra were evaluated by similarity index (SI) values. Characteristic of the CR mass spectra of the open-chain enolates are fragment ions formed by α-cleavage. However, the CR mass spectra are dominated by peaks of small hydrocarbon ions, particularly in the case of cyclic and bicyclic enolates. The CR mass spectra of enolates of linear heptanones differing in the position of the carbonyl group can be easily correlated with the structure of the parent ketone. The CR mass spectra of enolates of isomeric heptan-2-ones differing only in the degree of branching of the alkyl group are similar, but can be distinguished by the SI values. The CR mass spectra of the enolates of the isomeric cyclic and bicyclic ketones studied are more or less identical and cannot be used for structural assignment.     

The mass spectra and ionization potentials of the neutral fragments produced during the electron bombardment of aromatic compounds

A mass spectrometer equipped with a dual ionization chamber ion source has been used to characterize directly the neutral species produced in the dissociative ionization of gases by electron impact. Neutral fragment mass spectra have been obtained for the electron ionization and fragmentation of benzene, toluene, o-xylene, m-xylene, p-xylene, mesitylene and isotopically labeled toluene. The neutral fragment mass spectra correlate well with the structures of the molecules. The abundant species in the neutral fragment mass spectra also correlate reasonably well with the abundant complementary positive ions of the normal mass spectra. Ionization potentials have been determined for the abundant neutral species produced. Where comparisons with values reported elsewhere are possible, the agreement is usually within ±0.2 eV or less.     

Laser desorption fourier transform mass spectra of ascorbic and isoascorbic acids

Positive and negative ion laser desorption Fourier transform mass spectra of ascorbic acid, isoascorbic acid, and their sodium and potassium salts have been determined. A number of differences between these spectra and previously reported laser microprobe mass analyzer (LAMMA) spectra are found. In contrast with earlier results, m/z 175 anions are present in all negative ion spectra, as are cluster ions. Thus, it should not be concluded that the radical salts are electroneutral, as claimed in the earlier study.     

The mass spectra of small-ring heterocycles. IV

Both the high and low resolution mass spectra of fourteen isomeric trans- and cis-aroylaziridines are presented. In contrast to earlier low resolution mass spectral work on these compounds [1], a new fragmentation pathway for the loss of hydroxyl is presented. Also, the simple fission of the N-alkylnitrogen bond is described. Detailed fragmentation mechanisms are presented and discussed for the major ions found in the mass spectra.     

Mass spectra of the bitter principles fromPicrasma ailanthoides Planchon

The mass spectra of several bitter principles isolated from Picrasma ailanthoides Planchon (= P. quassioides Bennett) have been measured and characteristic fragmentation patterns useful for structure elucidation shown. The mass spectra of some related compounds are also described.     

Electron impact mass spectra of 3,5,7-triaryl-and -trialkyl-4H-1,2-diazepines

Electron impact mass spectra of 3,5,7-trisubstituted 4H-1,2-diazepines indicate that aryl substituents lead to N₂ expulsion while alkyl substitutents do not. A common fragmentation pattern is observed and discussed for all alkyldiazepines, most of which are newly reported compounds. Assignments are based on electron impact mass spectra of deuteriated substrates and high resolution mass spectra. A previous interpretation of N₂ expulsion is corrected.     

Electron impact fragmentation of isomeric 2-diazo-2-cyanoacetamides and 4-cyano-5-hydroxy-l,2,3-triazoles

On the basis of electron impact mass spectra, high-resolution mass spectra and metastable ion spectra, the isomerization of the molecular ions of N-aryl-2-diazo-2-cyanoacetamides and 1-aryl-4-cyano-5-hydroxy-l,2,3-triazoles into each other or into the common structure has been demonstrated. Corresponding N-cyclohexyl derivatives are unable to undergo such a transformation.     

Comparison of MALDI‐TOF mass spectra with microsatellite length polymorphisms in Candida albicans

Candida albicans is the most frequent yeast involved in human infections. Its population structure can be divided into several genetic clades, some of which have been associated with antifungal susceptibility. Therefore, detecting and monitoring fungal clones in a routine laboratory setting would be a major epidemiological advance. Matrix‐assisted laser desorption/ionization time‐of‐flight (MALDI‐TOF) mass spectra results are now widely used as bar codes to identify microorganisms in clinical microbiology laboratories. This study aimed at testing MALDI‐TOF mass spectra bar codes to identify clades among a set of C. albicans isolates. Accordingly, 102 clinical strains were genotyped using 10 microsatellite markers and analyzed via MALDI‐TOF mass spectrometry. The mass spectra were compared with a reference spectral library including 33 well‐characterized collection strains, using a Microflex^TM system and Biotyper^TM software, to test the capacity of the spectrum of a given isolate to match with the reference mass spectrum of an isolate from the same genetic clade. Despite high confidence species identification, the spectra failed to significantly match with the corresponding clade (p = 0.74). This was confirmed with the MALDI‐TOF spectra similarity dendrogram, in which the strains were dispersed irrespective of their genetic clade. Various attempts to improve intra‐clade spectra recognition were unsuccessful. In conclusion, MALDI‐TOF mass spectra bar code analysis failed to reliably recognize genetically related C. albicans isolates. Further studies are warranted to develop alternative MALDI‐TOF mass spectra analytical approaches to identify and monitor C. albicans clades in the routine clinical laboratory. Copyright © 2015 John Wiley & Sons, Ltd.     

Mass spectra of synthesized mixed bromochloroacetic acids

Mass spectra of methyl esters of three common drinking water chlorination by-products, bromodichloroacetic acid, dibromochloroacetic acid and tribromoacetic acid, are presented. The spectra are obtained in electron impact and chemical ionization modes, using a quadrupole mass spectrometer. Proposed fragment ion assignments are presented in detail. Fragment clusters were identified from their m/z values and confirmed with their relative isotope ratios. The detailed mass spectra presented are especially useful because standards for these drinking water contaminants are not yet commercially available.     

Electron-impact mass spectrometry of Nuphar alkaloids

Principal peaks in the mass spectra of deoxynupharidine are accounted for on the basis of high resolution mass spectrometry and peak shifts in the mass spectra of deoxynupharidine-4-d₁ and deoxynupharidine-6β, 7β-d₂. Cleavage of the quinolizidine ring system of deoxynupharidine occurs predominantly in ring A, giving m/e 136, 107, 98, 94 and 81. The origins of the family of ions [M — alkyl]⁺ and m/e 178 are considered. A comparative survey is made of the occurrence of these ions, and others, in the mass spectra of piperidine, quinolizidine and thiospirane types of Nuphar alkaloids. Attention is directed toions useful in distinguishing structural types.     

Analysis of regioisomers of α-O- and α-N-substituted oxazolidines using tandem mass spectrometry with electron impact and ammonia chemical ionization

Fragmentations induced by collision-activated dissociation of α-O- and α-N-substituted oxazolidines are demonstrated under ammonia chemical ionization (CI) and electron impact (El) conditions. Discrimination of these regioisomers is achieved using either conventional EI mass spectra or daughter ion mass spectra of the protonated molecules under ammonia CI conditions.     

Stereochemical effects in the electron impact mass spectra of cis-trans isomeric 1,2,3,4-tetramethylcyclohexanes

The mass spectra of six cis-trans isomeric 1,2,3,4-tetramethylcyclohexanes are discussed. The intensity ratio of [M? CH₃]⁺/[M? C₂H₅]⁺ correlates with the strain energies of the stereoisomers. Therefore, the identification of cis-trans isomers is possible by means of their mass spectra. The mass spectra of deuterium labelled compounds demonstrate favoured fragmentation of the axial methyl groups and ring opening between the cis substituted carbon atoms of the cyclohexane.     

Mass spectral studies on steroidal compounds. VIII—a comparative study of 6- and 7-oxalactones

The mass spectra of three steroidal ring B 7-oxalactones and one 6-oxalactone have been examined and comparison made with previously studied spectra of 6-oxa isomers. Whereas the mass spectra of 6-oxalactones are conspicuous by an intense peak at m/e 318, no such peak was found for 7-oxalactones. On the contrary, the 7-oxalactones showed characteristic [M ? CH₂O]⁺ ions. Thus, mass spectrometry offers an excellent means of differentiating between isomeric 6- and 7-oxa ?-lactones in the cholestane and β-sitostane series. The fragmentation pathways suggested are supported by accurate mass measurement of some of the salient fragment ions.     

Doubly charged ion mass spectra: 1-Aliphatic nitriles

The doubly charged ion mass spectra for 12 aliphatic nitriles (1–9 carbon atoms) have been obtained using an Hitachi RMU-7L double focusing mass spectrometer. These spectra show some characteristic features such as extensive loss of hydrogen and the grouping of ions in the spectra into n-1 groups where n is the number of carbon atoms in the molecule (n<6). There are no indications of HCN or CN loss in the doubly charged ion spectra of the monosubstituted nitriles. SCF calculations of the energy and structure of doubly charged ions in the propionitrile spectra have been carried out.     

Electrospray ionization multistage tandem mass spectrometry of penta- and hexa-substituted aryloxycyclotriphosphazenes

Several penta- and hexa-substituted aryloxycyclotriphosphazenes were synthesized and investigated by electrospray ionization tandem mass spectrometry (ESI-MSⁿ). Their main fragmentation pathways are proposed based on the MSⁿ and accurate mass data. An apparent hydrolysis reaction is an important fragmentation process exhibited in the ESI-MS/MS spectra for all of them. Also interesting is the intramolecular electrocyclic ring closure observed in ESI-MS/MS spectra of them. These observations may have some potential applications in the distinction between the mass spectra of penta- and hexa-substituted hexachlorocyclotriphosphazene derivatives.     

Synthesis and Electrospray Ionization Mass Spectra of N-（1,3, 2-Dioxaphosphorinan-2-ylmethyl）thiophosphoramidates

N-（1,3,2-Dioxaphosphorinan-2-ylmethyl）thiophosphoramidates were synthesized and determined by NMR spectra and positive ion electrospray ionization mass spectrometry （ESI-MS） in conjunction with tandem mass spectrometry （MS/MS）. The fragmentation pathways were investigated. The results show that these characteristic ions in ESI mass spectra are useful in the structural determination of N-（1,3,2-dioxaphosphorinan-2-ylmethyl）- thiophosphoramidates.