Nano‐Graphene Oxide Based Multichannel Sensor Arrays towards Sensing of Protein Mixtures

Optical array‐based sensors are attractive candidates for the detection of various bio‐analytes due to their convenient fabrication and measurements. For array‐based sensors, multichannel arrays are more advantageous and used frequently in many electronic sensors. But most reported optically array based sensors are constructed on a single channel array. This difficulty is mainly instigated from the overlap in optical responses. In this report we have used nano‐graphene oxide (nGO) and suitable fluorophores as sensor elements to construct a multichannel sensor array for the detection of protein analytes. By using the optimized multichannel array we are able to detect different proteins and mixtures of proteins with 100 % classification accuracy at sub‐nanomolar concentration. This modified method expedites the sensing analysis as well as minimizes the use of both analyte and sensor elements in array‐based protein sensing. We have also used this system for the single channel array‐based sensing to compare the sensitivity and the efficacy of these two systems for other applications. This work demonstrated an intrinsic trade‐off associated with these two methods which may be necessary to balance for array‐based analyte detections.     

Protein detection by nanopores equipped with aptamers

Protein nanopores have been used as stochastic sensors for the detection of analytes that range from small molecules to proteins. In this approach, individual analyte molecules modulate the ionic current flowing through a single nanopore. Here, a new type of stochastic sensor based on an αHL pore modified with an aptamer is described. The aptamer is bound to the pore by hybridization to an oligonucleotide that is attached covalently through a disulfide bond to a single cysteine residue near a mouth of the pore. We show that the binding of thrombin to a 15-mer DNA aptamer, which forms a cation-stabilized quadruplex, alters the ionic current through the pore. The approach allows the quantification of nanomolar concentrations of thrombin, and provides association and dissociation rate constants and equilibrium dissociation constants for thrombin·aptamer interactions. Aptamer-based nanopores have the potential to be integrated into arrays for the parallel detection of multiple analytes.     

Approaches to the rational design of molecularly imprinted polymers

In our experience the efficient design of molecularly imprinted polymer (MIPs) for novel templates has proved difficult. Following commonly used imprinting protocols, MIPs designed against one template show both a lack of capacity and poor specificity for rebinding either the template or structurally similar analytes. Optimisation methods that involve changing one factor at a time can be laborious.A novel approach for the optimisation of MIPs using chemometrics is described. Sulfonamides, common drug residues in foodstuffs, were used as the model analytes with a methacrylic acid/ethylene glycol dimethacrylate MIP. To avoid the inaccuracies in measurement caused by template bleed a multi-analyte competition rebind assay was developed to select suitable sulfonamides to be used as the template for the MIP, and for the rebind analyte in the chemometric optimisation study. The rebinding efficiencies were monitored by HPLC. The template sulfonamide was selected as sulfamethazine (SMZ), and the rebind analyte as sulfadimethoxine (SDIM). The template:monomer:cross-linker (T:M:X) ratio of the SMZ block MIP was then optimised using a three-level full factorial design to predict a MIP with the highest rebind capacity. On synthesis this was 38.8% for SDIM in a solid phase extraction (SPE) application agreeing with the predication. The factorial design was further utilised to predict an optimum T:M:X ratio for the production of a class specific MIP, capable of binding a range of sulfonamides simultaneously. The predicted optimum T:M:X ratios of (1:10:55) and (1:10:10) were found to be different to commonly used ratios from the MIP literature.     

Optical metal-organic framework sensor for selective discrimination of some toxic metal ions in water

This paper reports the development of a facile and effective approach, based on the use of Zr-based metal-organic frameworks (UiO-66) sensor with micropores geometry, shape and particle morphology for the visual detection and removal of ultra-traces of some toxic metal ions such as Bi(III), Zn(II), Pb(II), Hg(II) and Cd(II). UiO-66 was used as selective carriers for accommodating hydrophobic chromophore probes such as dithizone (DZ) without coupling agent for sensitive and selective discrimination of trace level of toxic analytes. The developed UiO-66 sensor was utilized for the detection of ultra-traces of some toxic metal ions with the naked eye. The new sensor displays high sensitivity and selectivity of a wide range of detectable metals analytes up to 10⁻¹⁰ mol dm⁻³ in solution, in a rapid analyte uptake response (seconds). The developed sensor is stable, cost effective, easy to prepare, and would be useful for rapid detection and removal of ultra-traces of toxic metal ions in water samples.     

Convection, diffusion and reaction in a surface-based biosensor: modeling of cooperativity and binding site competition on the surface and in the hydrogel

We study theoretically the transport and kinetic processes underlying the operation of a biosensor (particularly the surface plasmon sensor "Biacore") used to study the surface binding kinetics of biomolecules in solution to immobilized receptors. Unlike previous studies, we concentrate mainly on the modeling of system-specific phenomena rather than on the influence of mass transport limitations on the intrinsic kinetic rate constants determined from binding data. In the first problem, the case of two-site binding where each receptor unit on the surface can accommodate two analyte molecules on two different sites is considered. One analyte molecule always binds first to a specific site. Subsequently, the second analyte molecule can bind to the adjacent unoccupied site. In the second problem, two different analytes compete for one binding site on the same surface receptor. Finally, the third problem considers the case of positive cooperativity among bound molecules in the hydrogel using a simple mean-field approach. The transport in both the flow channel and the hydrogel phases of the biosensor is taken into account in this case (with few exceptions, most previous studies assume a simpler model in which the hydrogel is treated as a planar surface with the receptors). We consider simultaneously diffusion and convection through the flow channel together with diffusion and cooperativity binding on the surface and in the hydrogel. In each case, typical results for the concentration contours of the free and bound molecules in the flow channel and hydrogel regions are presented together with the time-dependent association/dissociation curves and reaction rates. For binding site competition, the analysis predicts overshoot phenomena.     

Gas sensing mechanism in chemiresistive cobalt and metal-free phthalocyanine thin films

The gas sensing behaviors of cobalt phthalocyanine (CoPc) and metal-free phthalocyanine (H2Pc) thin films were investigated with respect to analyte basicity. Chemiresistive sensors were fabricated by deposition of 50 nm thick films on interdigitated gold electrodes via organic molecular beam epitaxy (OMBE). Time-dependent current responses of the films were measured at constant voltage during exposure to analyte vapor doses. The analytes spanned a range of electron donor and hydrogen-bonding strengths. It was found that, when the analyte exceeded a critical base strength, the device responses for CoPc correlated with Lewis basicity, and device responses for H2Pc correlated with hydrogen-bond basicity. This suggests that the analyte-phthalocyanine interaction is dominated by binding to the central cavity of the phthalocyanine with analyte coordination strength governing CoPc sensor responses and analyte hydrogen-bonding ability governing H2Pc sensor responses. The interactions between the phthalocyanine films and analytes were found to follow first-order kinetics. The influence of O2 on the film response was found to significantly affect sensor response and recovery. The increase of resistance generally observed for analyte binding can be attributed to hole destruction in the semiconductor film by oxygen displacement, as well as hole trapping by electron donor ligands.     

Reaction-based fluorescent probe for detecting of sulfur dioxide derivatives and hydrazine via distinct emission signals

Recently, the construction of multiple analytes responsive fluorescent probes with distinct emission signals has attracted widely attention. Thus, we have designed and synthesized a new fluorescent probe, 2-(2-hydroxyphenyl)benzothiazole dye skeleton (HBT-1), for the detection of sulfur dioxide and hydrazine. Significant fluorescence enhancements in two distinct emission bands (λ_em?=?464?nm and 498?nm) were generated when HBT-1 reacted with sulfur dioxide derivatives or hydrazine, respectively. Furthermore, the probe HBT-1 response can be saturated surpurisingly at the low concentration (100?μM), shorter reaction time for sulfur dioxide derivatives, while a longer reaction time and greater concentration (400?μM) for hydrazine. In other words, the probe HBT-1 can detect sulfur dioxide derivatives without hydrazine interference at low analyte concentrations.     

Characterisation of morphology of self-assembled PEG monolayers: a comparison of mixed and pure coatings optimised for biosensor applications

For detection of low concentrations of analytes in complex biological matrices using optical biosensors, a high surface loading with capture molecules and a low nonspecific binding of nonrelevant matrix molecules are essential. To tailor biosensor surfaces in such a manner, poly(ethylene glycols) (PEG) in varying lengths were immobilised covalently onto glass-type surfaces in different mixing ratios and concentrations, and were subsequently modified with three different kinds of receptors. The nonspecific binding of a model protein (ovalbumin, OVA) and the maximum loading of the respective analytes to these prepared surfaces were monitored using label-free and time-resolved reflectometric interference spectroscopy (RIfS). The three different analytes used varied in size: 150 kDa for the anti-atrazine antibody, 60 kDa for streptavidin and 5 kDa for the 15-bp oligonucleotide. We investigated if the mixing of PEG in different lengths could increase the surface loadings of analyte mimicking a three-dimensional matrix as was found using dextrans as sensor coatings. In addition, the effect on the surface loading was investigated with regard to the size of the analyte molecule using such mixed PEGs on the sensor surface. For further characterisation of the surface coatings, polarisation modulation infrared reflection absorption spectroscopy, atomic force microscopy, and ellipsometry were applied. All authors contributed equally to this work.     

Novel coumarin-based containing denrons selective fluorescent chemosesor for sequential recognition of Cu2+ and PPi

In this study, we have successfully synthesized a novel coumarin-based dendrons derivative CD and its chemical structure was characterized by ¹H NMR, ¹³C NMR and ESI-HR-MS. The sensor CD showed an obvious “on-off” fluorescence quenching response toward Cu²⁺ with a maximum quenching efficiency of 99.8%. The CD-Cu²⁺ complex showed an “off-on” fluorescence enhancement response toward PPi over many competitive anions. The detection limit of the sensor CD was 0.29?×?10^?6?M to Cu²⁺ and 2.39?×?10^?9?M to PPi. In addition, the sensor CD showed a 1:1 binding stoichiometry to Cu²⁺ and the sensor CD-Cu²⁺ showed a 2:1 binding stoichiometry to PPi in CH₃CN/HEPES buffer medium (9:1 v/v, pH?=?7.2). The stable pH range of sensor CD to Cu²⁺ and CD-Cu²⁺ to PPi was from 3 to 8.     

DNA affinity cleaving : Sequence specific cleavage of DNA by Distamycin-EDTA - Fe(II) and EDTA-distamycin Fe(II)

The attachment of EDTA· Fe(II) to distamycin changes the sequence specific DNA binding antibiotic into a sequence specific DNA cleaving molecule. We report the synthesis of EDTA-distamycin (ED) which has the metal chelator, EDTA, tethered to the carboxy terminus of the N-methylpyrrole tripeptide moiety of the antiobiotic, distamycin. EDTA-distamycin- Fe(II) (ED)·FeII at 10^-6M concentration efficiently cleaves pBR322 DNA (10^-5M in base pairs) in the presence of oxygen and dithiothreitol (DTT). Using Maxam-Gilbert sequencing gel analyses, we find that ED· Fe(II) affords DNA cleavage patterns of unequal intensity covering two to four contiguous base pairs adjacent to a five base pair site consisting of adenines (A) and thymines (T). The multiple cleavages at each site might be evidence for a diffusible oxidizing species, perhaps hydroxyl radical. The unequal intensity of cleavage on each side of the A + T site permit assignment of major and minor orientations of the tripeptide binding unit. A comparison of the cleavage specificity of ED· Fe(II) with distamycin-EDTA· Fe(II), (DE· Fe(II)) which has EDTA · Fe(II) attached to the amino terminus of the N-methylpyrrole tripeptide, shows DNA cleavage patterns at the same sites but with intensities of opposite polarity. Maxam-Gilbert sequencing el analysis of the DNA cleavage patterns by ED Fe(II) and DE Fe(II) on both DNA strands of a 381 se pair restriction fragment reveals asymmetric DNA cleavage patterns. Cleavage is shifted to the 3' de of each DNA strand. A model consistent with this cleavage pattern indicates one preferred binding te for ED Fe(II) and DE Fe(II) is 3'-TTTAA-5' with the “amino end” of the tripeptide oriented to e 3' end of the thymine rich strand. p]This “DNA affinity cleavage” method which consists of attaching cleaving functions to DNA binding molecules followed by DNA cleavage pattern analyses using Maxam-Gilbert sequencing gels may be a useful direct method for determining the binding site and orientation of small molecules on native DNA.     

A coumarin based highly selective fluorescent chemosensor for sequential recognition of Cu2+ and PPi

In this study, we have successfully synthesized a new coumarin based fluorescent chemosensor 1, in which tren and quinolone are introduced as receptors for sequential recognition of Cu²⁺ and PPi. The structure of chemosensor 1 was characterized by ¹H NMR, ¹³C NMR and ESI-HR-MS. Sensor 1 showed an obvious “on-off” fluorescence quenching response toward Cu²⁺, and the quenching efficiency reached a maximum of 99.6% with the addition of 20 equiv. of Cu²⁺. The 1-Cu²⁺ complex showed an “off-on” fluorescence enhancement response toward PPi over many competitive anions, especially HPO₄^2? and H₂PO₄^?. The detection limit of sensor 1 was 1.9?×?10^?6?M to Cu²⁺ and 5.96?×?10^?8?M to PPi. In addition, sensor 1 showed a 1:1 binding stoichiometry to Cu²⁺ and sensor 1-Cu²⁺ showed a 2: 1 binding stoichiometry to PPi in CH₃CN/HEPES buffer medium (9:1 v/v, pH?=?7.4). The stable pH range of sensor 1 to Cu²⁺ and 1-Cu²⁺ to PPi was from 4 to 8.     

Optical supermicrosensor responses for simple recognition and sensitive removal of Cu (II) Ion target

The field of optical chemosensor technology demands a simple yet general design for fast, sensitive, selective, inexpensive, and specific recognition of a broad range of toxic metal ions. The suitable accommodation of chromogenic receptors onto ordered porous carriers have led to selective and sensitive chemosensors of target species. In this study, we offer real evidence on the potential use of two- and three-dimensional (2D and 3D) ordered supermicroporous monoliths as selective shape and size carriers for immobilizing the chromogenic probe. Among all the chemosensors, 3D supermicropore has exhibited easy accessibility of target ions, such as ion transports and high affinity responses of receptor-metal analyte binding events. This leads to an optical color signal that is easily generated and transduced even at trace levels of Cu(II) target ions. The supermicrosensors have shown the ability to create Cu(II) ion-sensing responses up to nanomolar concentrations (∼10⁻⁹ mol/dm³) with rapid response time (in the order of seconds). Supermicrosensors have the ability to create easily modified sensing systems with multiple regeneration/reuse cycles of sensing systems of Cu(II) analytes. The simple treatment using ClO₄⁻ anion as a stripping agent has removed effectively the Cu(II) ions and formed a “metal-free” probe surface. The supermicrosensors have exhibited the specificity behavior permitting Cu(II) ion-selective determination in real-life samples, such as in wastewater, despite the presence of active component species. Extensive analytical results indicate that the use of the supermicrosensor as Cu(II) ion strips for field screening can be a time- and cost-alternative tool to current effective laboratory assays.     

Multi-analyte SPR immunoassays for environmental biosensing of pesticides

Multi-analyte detection of environmentally relevant pesticides is performed by using a two-channelled surface plasmon resonance (SPR) biosensor. The special design of the SPR instrument allows the determination of several analytes (DDT, chlorpyrifos and carbaryl) via different immobilization formats. First, simultaneous pesticide monitoring is possible by flowing chlorpyrifos, carbaryl or DDT samples separately over each channel of the SPR system, wherein their corresponding recognition element was previously immobilized. The second approach is based on the multiple and combined immobilization of several analyte recognition elements on the sensing surface of one individual flow cell. In this format, the analysis time for all three pesticides varied from 40 to 60 min depending on the number of regeneration cycles. In most cases, similar detection limits were attained for the target analyte irrespective of the assay format, with sensitivity values at the nanogram per litre level (18–50 ng L⁻¹). The assay reproducibility was proved through the repeated use of the same sensor surface for over more than 200 assay cycles, whereas the absence of biosensor response to non-related analytes showed the specificity and reliability of the analysis. The SPR instrument, including optics, electronics and microfluidics, is already commercialised by the company SENSIA, SL.     

Sweeping and new on-line sample preconcentration techniques in capillary electrophoresis

Sweeping is a powerful on-line sample preconcentration technique that improves the concentration sensitivity of capillary electrophoresis (CE). This approach is designed to focus the analyte into narrow bands within the capillary, thereby increasing the sample volume that can be injected, without any loss of CE efficiency. It utilizes the interactions between an additive [i.e., a pseudostationary phase (PS) or complexing agent] in the separation buffer and the sample in a matrix that is devoid of the additive used. The accumulation occurs due to chromatographic partitioning, complexation or any interaction between analytes and the additive through electrophoresis. The extent of the preconcentration is dependent on the strength of interaction involved. Both charged and neutral analytes can be preconcentrated. Remarkable improvements—up to several thousandfold—in detection sensitivity have been achieved. This suggests that sweeping is a superior and general approach to on-line sample preconcentration in CE. The focusing mechanism of sweeping under different experimental conditions and its combination with other on-line preconcentration techniques are discussed in this review. The recently introduced techniques of transient trapping (tr-trapping) and analyte focusing by micelle collapse (AFMC) as well as other novel approaches to on-line sample preconcentration are also described.

Detection of pure chemical vapors in a thermally cycled porous silica photonic crystal

The condensation and evaporation of vapors of isopropanol, heptane, and cyclohexane in mesoporous silica photonic crystals are monitored by optical reflection spectroscopy as a function of sensor temperature. The spectral position of the stop band shifts to the red upon analyte adsorption, and it shifts to the blue as the sensor is heated and analyte evaporates from the porous nanostructure. The hysteresis of the optical response as the temperature of the sensor is cycled between 25 and 80 °C is characteristic of each analyte for partial pressures between 0 and 7.5 Torr. These characteristic hysteresis loops allow identification of the three analytes. The temporal response of the sensor is studied as a function of heating rate and analyte concentration in a flowing stream of analyte vapor, and it is compared with the equilibrium adsorption isotherms of the sensor. The ability of the temporal data to identify the analytes is attributed to differences in diffusion and adsorption properties of each analyte within the mesoporous silica sensor.     

Highly selectively monitoring heavy and transition metal ions by a fluorescent sensor based on dipeptide

Fluorescent sensor (DMH) based on dipeptide was efficiently synthesized in solid phase synthesis. The dipeptide sensor shows sensitive response to Ag(I), Hg(II), and Cu(II) among 14 metal ions in 100% aqueous solution. The fluorescent sensor differentiates three heavy metal ions by response type; turn on response to Ag(I), ratiometric response to Hg(II), and turn off detection of Cu(II). The detection limits of the sensor for Ag(I) and Cu(II) were much lower than the EPA's drinking water maximum contaminant levels (MCL). Specially, DMH penetrated live cells and detected intracellular Ag⁺ by turn on response. We described the fluorescent change, binding affinity, detection limit for the metal ions. The study of a heavy metal-responsive sensor based on dipeptide demonstrates its potential utility in the environment field.     

Protein biosensors based on biofunctionalized conical gold nanotubes

There is increasing interest in the concept of using nanopores as the sensing elements in biosensors. The nanopore most often used is the alpha-hemolysin protein channel, and the sensor consists of a single channel embedded within a lipid bilayer membrane. An ionic current is passed through the channel, and analyte species are detected as transient blocks in this current associated with translocation of the analyte through the channel-stochastic sensing. While this is an extremely promising sensing paradigm, it would be advantageous to eliminate the very fragile lipid bilayer membrane and perhaps to replace the biological nanopore with an abiotic equivalent. We describe here a new family of protein biosensors that are based on conically shaped gold nanotubes embedded within a mechanical and chemically robust polymeric membrane. While these sensors also function by passing an ion current through the nanotube, the sensing paradigm is different from the previous devices in that a transient change in the current is not observed. Instead, the protein analyte binds to a biochemical molecular-recognition agent at the mouth of the conical nanotube, resulting in complete blockage of the ion current. Three different molecular-recognition agents, and correspondingly three different protein analytes, were investigated: (i) biotin/streptavidin, (ii) protein-G/immunoglobulin, and (iii) an antibody to the protein ricin with ricin as the analyte.     

Fabrication of an optical sensor based on the immobilization of Qsal on the plasticized PVC membrane for the determination of copper(II)

A novel optical sensor has been proposed for sensitive determination of Cu(II) ion in aqueous solutions. The copper sensing membrane was prepared by incorporating Qsal (2-(2-hydroxyphenyl)-3H-anthra[2,1-d]imidazole-6,11-dione) as ionophore in the plasticized PVC membrane containing tributyl phosphate (TBP) as plasticizer. The membrane responds to Cu(II) ion by changing color reversibly from yellow to dark red in acetate buffer solution at pH 4.0. The proposed sensor displays a linear range of 6.3 × 10^?7?1.00 × 10^?4 M with a limit of detection of 3.3 × 10^?7 M. The response time of the optical sensor was about 3?C5 min, depending on the concentration of Cu(II) ions. The selectivity of the optical sensor to Cu(II) ions in acetate buffer is good. The sensor can readily be regenerated by hydrochloric acid (0.1 M). The optical sensor is fully reversible. The proposed optical sensor was applied to the determination of Cu(II) in environmental water samples.