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1.
The crystal structure of the ammonia transport (Amt) protein AmtB at 1.4 Angstrom resolution revealed four ammonia/ammonium (NH(3)/NH(4)(+)) binding sites along the approximately 20 Angstrom narrow pore. It is an open question whether the bound NH(3)/NH(4)(+) are neutral (NH(3)) or cationic (NH(4)(+)). On the basis of the AmtB crystal structure, we calculated the pK(a) of these four NH(3)/NH(4)(+) by solving the Poisson-Boltzmann equation. Except for one NH(3)/NH(4)(+) binding site (Am1) at the entry point of the Amt pore, binding sites are occupied by NH(3) due to lack of energy contributions from solvation, eliminating an existence of charged form NH(4)(+) and, inevitably, its potential cation-pi interaction. The only two titratable residues in the pore, His168 and His318, are in the neutral charge state. The NH(4)(+) charge state at the Am1 site is stabilized by Ser219 functioning as an H-bond acceptor. However, when involving explicit crystal water nearby, the NH(3) charge state is stabilized by the reorientation of Ser219-OH group. This H-bond donor Ser219 significantly decreases the pK(a) of NH(3)/ NH(4)(+) at the Am1 site to approximately 1. The flip/flop H-bond of Ser219 may play a dual role first in binding and subsequently in deprotonating NH(4)(+), which is a prerequisite to conduct NH(3) through the Amt pore across the membrane.  相似文献   

2.
The gas-phase ion chemistry of BF(3)/NH(3) mixtures was investigated by the joint application of mass-spectrometric techniques and theoretical methods. The addition of BF(2)(+) to NH(3) led to the first observation of [BF(2),NH(3)](+) and [BF,NH(2)](+) ions. Diamidoboron cation B(NH(2))(2)(+) was also detected. Consistent with collisionally activated dissociation (CAD) mass spectrometric results, theoretical calculations performed at the B3LYP and CCSD(T) levels identified the F(2)B-NH(3)(+), FB-NH(2)(+), and NH(2)-B-NH(2)(+) ions as the most stable isomers on the corresponding potential energy surfaces. The F(2)B-NH(3)(+) ion represents the protonated form of aminodifluoroborane, BF(2)NH(2), and consequently behaves as a Br?nsted acid under FT-ICR conditions. The FBNH(2)(+) ion is able to add Lewis bases such as water, ammonia, and hydrazoic acid. These species, containing the BN moiety, may represent new promising projectile ions in the boron nitride deposition techniques involving high-energy ion beams.  相似文献   

3.
Hammerhead ribozymes have been considered to be metalloenzymes. However, this proposal was recently questioned by the finding that the reaction proceeds in the presence of high concentrations of monovalent ions such as NH(4)(+) ions and in the absence of any divalent metal ions. Our present analysis based on solvent isotope effects indicates that (1) a proton transfer(s) occurs only in the NH(4)(+)-mediated reaction but not in metal-ion-mediated reactions such as Mg(2+)- and Li(+)-mediated reactions, (2) the catalyst that stabilizes the 5' leaving group in the NH(4)(+)-mediated reaction is different from that in the metal-ion-mediated HH ribozyme reactions, (3) an NH(4)(+) ion seems to act as a general acid catalyst, and (4) a nucleobase alone should not be the catalyst.  相似文献   

4.
Temperature-dependent Raman spectroscopy and X-ray diffraction studies have been carried out on NH(4)HSO(4) single crystals in the temperature range 77-298 K. Two structural transitions driven by the molecular ordering and change in crystal symmetries are observed below 263 and 143 K. These phase transitions are marked by the anomalies in the temperature dependence of wavenumber and fwhm of several internal vibrational modes. The Raman spectra and X-ray data enable us to understand the nature of the molecular ordering resulting in the ferroelectric phase below 263 K, sandwiched between two nonferroelectric phases. The crystal structure of the ferroelectric phase is determined correctly as Pc, which has been earlier solved in Ba symmetry. The temperature dependent Raman and X-ray results suggest that the disorder to order transition leading to lower symmetry below 263 K is driven by the change in HSO(4)(-) ions and that below 143 K is driven by the change in both HSO(4)(-) and NH(4)(+) ions.  相似文献   

5.
Ab initio (HF, MP2, and CCSD(T)) and DFT (B3LYP) calculations were done in modeling the cation (H(+), Li(+), Na(+), K(+), Ca(2+), Mg(2+), NH(4)(+), and NMe(4)(+)) interaction with aromatic side chain motifs of four amino acids (viz., phenylalanine, tyrosine, tryptophan and histidine). As the metal ion approaches the pi-framework of the model systems, they form strongly bound cation-pi complexes, where the metal ion is symmetrically disposed with respect to all ring atoms. In contrast, proton prefers to bind covalently to one of the ring carbons. The NH(4)(+) and NMe(4)(+) ions have shown N-H...pi interaction and C-H...pi interaction with the aromatic motifs. The interaction energies of N-H...pi and C-H...pi complexes are higher than hydrogen bonding interactions; thus, the orientation of aromatic side chains in protein is effected in the presence of ammonium ions. However, the regioselectivity of metal ion complexation is controlled by the affinity of the site of attack. In the imidazole unit of histidine the ring nitrogen has much higher metal ion (as well as proton) affinity as compared to the pi-face, facilitating the in-plane complexation of the metal ions. The interaction energies increase in the order of 1-M < 2-M < 3-M < 4-M < 5-M for all the metal ion considered. Similarly, the complexation energies with the model systems decrease in the following order: Mg(2+) > Ca(2+) > Li(+) > Na(+) > K(+) congruent with NH(4)(+) > NMe(4)(+). The variation of the bond lengths and the extent of charge transfer upon complexation correlate well with the computed interaction energies.  相似文献   

6.
We report a solid-state multinuclear ((23)Na, (15)N, (13)C, and (31)P) NMR study on the relative affinity of monovalent cations for a stacking G-quartet structure formed by guanosine 5'-monophosphate (5'-GMP) self-association at pH 8. Two major types of cations are bound to the 5'-GMP structure: one at the surface and the other within the channel cavity between two G-quartets. The channel cation is coordinated to eight carbonyl oxygen atoms from the guanine bases, whereas the surface cation is close to the phosphate group and likely to be only partially hydrated. On the basis of solid-state (23)Na NMR results from a series of ion titration experiments, we have obtained quantitative thermodynamic parameters concerning the relative cation binding affinity for each of the two major binding sites. For the channel cavity site, the values of the free energy difference (Delta G degrees at 25 degrees C) for ion competition between M(+) and Na(+) ions are K(+) (-1.9 kcal mol(-1)), NH(4)(+) (-1.8 kcal mol(-1)), Rb(+) (-0.3 kcal mol(-1)), and Cs(+) (1.8 kcal mol(-1)). For the surface site, the values Delta G degrees are K(+) (2.5 kcal mol(-1)), NH(4)(+) (-1.3 kcal mol(-1)), Rb(+) (1.1 kcal mol(-1)), and Cs(+) (0.9 kcal mol(-1)). Solid-state NMR data suggest that the affinity of monovalent cations for the 5'-GMP structure follows the order NH(4)(+) > Na(+) > Cs(+) > Rb(+) > K(+) at the surface site and K(+) > NH(4)(+) > Rb(+) > Na(+) > Cs(+) > Li(+) at the channel cavity site. We have found that the cation-induced stability of a 5'-GMP structure is determined only by the affinity of monovalent cations for the channel site and that the binding of monovalent cations to phosphate groups plays no role in 5'-GMP self-ordered structure. We have demonstrated that solid-state (23)Na and (15)N NMR can be used simultaneously to provide mutually complementary information about competitive binding between Na(+) and NH(4)(+) ions.  相似文献   

7.
[(NH(3))(2)BH(2)](+)[BH(4)](-) is formed from the room temperature decomposition of NH(4)(+)BH(4)(-), via a NH(3)BH(3) intermediate. Its crystal structure has been determined and contains disordered BH(4)(-) ions in 2 distinct sites. Hydrogen release is similar to that from NH(3)BH(3) but with faster kinetics.  相似文献   

8.
New particle formation in the atmosphere is initiated by nucleation of gas-phase species. The small molecular clusters that act as seeds for new particles are stabilized by the incorporation of an ion. Ion-induced nucleation of molecular cluster ions containing sulfuric acid generates new particles in the background troposphere. The addition of a proton-accepting species to sulfuric acid cluster ions can further stabilize them and may promote nucleation under a wider range of conditions. To understand and accurately predict atmospheric nucleation, the stabilities of each molecular cluster within a chemical family must be known. We present the first comprehensive measurements of the ammonia-sulfuric acid positive ion cluster system NH(4)(+)(NH(3))(n)(H(2)SO(4))(s). Enthalpies and entropies of individual growth steps within this system were measured using either an ion flow reactor-mass spectrometer system under equilibrium conditions or by thermal decomposition of clusters in an ion trap mass spectrometer. Low level ab initio structural calculations provided inputs to a master equation model to determine bond energies from thermal decomposition measurements. Optimized ab initio structures for clusters up through n = 3, s = 3 are reported. Upon addition of ammonia and sulfuric acid pairs, internal proton transfer generates multiple NH(4)(+) and HSO(4)(-) ions within the clusters. These multiple-ion structures are up to 50 kcal mol(-1) more stable than corresponding isomers that retain neutral NH(3) and H(2)SO(4) species. The lowest energy n = s clusters are composed entirely of ions. The addition of acid-base pairs to the core NH(4)(+) ion generates nanocrystals that begin to resemble the ammonium bisulfate bulk crystal starting with the smallest n = s cluster, NH(4)(+)(NH(3))(1)(H(2)SO(4))(1). In the absence of water, this cluster ion system nucleates spontaneously for conditions that encompass most of the free troposphere.  相似文献   

9.
The selected ion flow tube (SIFT) technique has been used to investigate the ion-molecule reactions of several ions with the neutral molecules ethylene oxide, CH(2)OCH(2)-c, and propenal, CH(2)CHCHO. Both molecules have been identified in hot-core star forming regions [] and have significance to astrochemical models of the interstellar (ISM) and circumstellar medium (CSM). Moreover, the molecules contain functional groups, such as the epoxide group (ethylene oxide) and an aldehyde group, which are part of a conjugated pi-electron system (propenal) whose reactivities have not been studied in detail in gas-phase ion-molecule reactions. The larger recombination energy ions, Ar(+) and N(2)(+), were reacted with the neutrals to give insight into general fragmentation tendencies. These reactions proceeded via dissociative charge-transfer yielding major fragmentation products of CH(3)(+) and HCO(+) for ethylene oxide and CH(2)CH(+) and HCO(+) for propenal. The amino acids glycine and alanine are of particular interest to astrobiology, especially if they can be synthesized in the gas phase. In an attempt to synthesize amino acid precursors, ethylene oxide and propenal were reacted with NH(n)(+) (n = 1-4) and HCNH(+). As might be expected from the proton detachment energies, NH(+), NH(2)(+), and HCNH(+) reacted via proton transfer. NH(3)(+) reacted with each molecule via H-atom abstraction to produce NH(4)(+), and NH(4)(+) reacted via a ternary association. All binary reactions proceeded near the gas kinetic rate. Several associated molecule switching reactions were performed and implications of these reactions to the structures of the association products are discussed Ikeda et al. and Hollis et al.  相似文献   

10.
Helium nanodroplets are co-doped with C(60) and ammonia. Mass spectra obtained by electron ionization reveal cations containing ammonia clusters complexed with up to four C(60) units. The high mass resolution of Δm/m≈ 1/6000 makes it possible to separate the contributions of protonated, unprotonated and dehydrogenated ammonia. C(60) aggregates suppress the proton-transfer reaction which usually favors the appearance of protonated ammonia cluster ions. Unprotonated C(x)(NH(3))(n)(+) ions (x = 60, 120, 180) exceed the abundance of the corresponding protonated ions if n < 5; for larger values of n the abundances of C(60)(NH(3))(n)(+) and C(60)(NH)(n-1)NH(4)(+) become about equal. Dehydrogenated C(60)NH(2)(+) ions are relatively abundant; their formation is attributed to a transient doubly charged C(60)-ammonia complex which forms either by an Auger process or by Penning ionization following charge transfer between the primary He(+) ion and C(60). The abundance of C(x)NH(3)(+) and C(x)NH(4)(+) ions (x = 120 or 180) is one to two orders of magnitude weaker than the abundance of ions containing one or two additional ammonia molecules. However, a model involving evaporation of NH(3) or NH(4) from the presumably weakly bound C(x)NH(3)(+) and C(x)NH(4)(+) ions is at odds with the lack of enhancement in the abundance of C(120)(+) and C(180)(+). Mass spectra of C(60) dimers complexed with water complement a previous study of C(60)(H(2)O)(n)(+) recorded at much lower mass resolution.  相似文献   

11.
Pyrolysis of prominent precursor compounds for the synthesis of carbon nitride type materials (e.g., melamine, thiourea) have been studied in detail. Molecular adducts containing monoprotonated melamium C(6)N(11)H(10)(+) and melaminium HC(3)N(3)(NH(2))(3)(+) ions, respectively, have been identified as intermediates. The adduct C(6)N(11)H(10)Cl·0.5NH(4)Cl was obtained by the reaction of melamine C(3)N(3)(NH(2))(3) with NH(4)Cl at 450 °C. During the pyrolysis of thiourea, guanidinium thiocyanate was initially formed and subsequently the melamium thiocyanate melamine adduct C(6)N(11)H(10)SCN·2C(3)N(3)(NH(2))(3) was isolated at 300 °C. A second melaminium thiocyanate melamine adduct with the formula HC(3)N(3)(NH(2))(3)SCN·2C(3)N(3)(NH(2))(3) represents an intermediary reaction product that is best accessible at low pressures. The crystal structures of the compounds were solved by single-crystal XRD. Unequivocal proton localization at the C(6)N(11)H(10)(+) ion was established. A typical intramolecular and interannular hydrogen bridge and other characteristic hydrogen-bonding motifs were identified. Additionally, the adducts were investigated by solid-state NMR spectroscopy. Our study provides detailed insight into the thermal condensation of thiourea by identifying and characterizing key intermediates involved in the condensation process leading to carbon nitride type materials. Furthermore, factors promoting the formation of melamium adduct phases over melem are discussed.  相似文献   

12.
The lithium amide (LiNH(2)) + lithium hydride (LiH) system is one of the most attractive light-weight materials options for hydrogen storage. Its dehydrogenation involves mass transport in the bulk (amide) crystal through lattice defects. We present a first-principles study of native point defects and dopants in LiNH(2) using density functional theory. We find that both Li-related defects (the positive interstitial Li(i)(+) and the negative vacancy V(Li)(-)) and H-related defects (H(i)(+) and V(H)(-)) are charged. Li-related defects are most abundant. Having diffusion barriers of 0.3-0.5 eV, they diffuse rapidly at moderate temperatures. V(H)(-) corresponds to the [NH](2-) ion. It is the dominant species available for proton transport with a diffusion barrier of ~0.7 eV. The equilibrium concentration of H(i)(+), which corresponds to the NH(3) molecule, is negligible in bulk LiNH(2). Dopants such as Ti and Sc do not affect the concentration of intrinsic defects, whereas Mg and Ca can alter it by a moderate amount. Ti and Mg are easily incorporated into the LiNH(2) lattice, which may affect the crystal morphology on the nano-scale.  相似文献   

13.
The intermetallic compounds YbAu(2)In(4) and Yb(2)Au(3)In(5) were obtained as single crystals in high yield from reactions run in liquid indium. Single crystal X-ray diffraction data of YbAu(2)In(4) showed that it crystallizes as a new structure type in the monoclinic space group P2(1)/m and lattice constants a = 7.6536(19) ?, b = 4.5424(11) ?, c = 9.591(2) ? and β = 107.838(4)°. The YbAu(2)In(4) compound is composed of a complex [Au(2)In(4)](3-) polyanionic network in which the rare-earth ions are embedded. Yb(2)Au(3)In(5) crystallizes in the polar space group Cmc2(1) with the Y(2)Rh(3)Sn(5) type structure and lattice constants a = 4.5351(9) ?, b = 26.824(5) ?, and c = 7.4641(15) ?. The gold and indium atoms define a complex three-dimensional [Au(3)In(5)] network with a broad range of Au-In (2.751(2) ?-3.0518(16) ?) and In-In (3.062(3) ?-3.3024(19) ?) distances. Magnetic susceptibility measurements of YbAu(2)In(4) revealed a transition at 25 K. Below the transition, the susceptibility of YbAu(2)In(4) follows Curie-Weiss behavior with an effective paramagnetic moment of 0.79 μ(B)/Yb. Magnetic susceptibility measurements on Yb(2)Au(3)In(5) show a mixed valent ytterbium and the magnetic moment within the linear region (<100 K) of 1.95 μ(B)/Yb. Heat capacity data for YbAu(2)In(4) and Yb(2)Au(3)In(5) give Debye temperatures of 185 and 153 K, respectively.  相似文献   

14.
tert-Butyl radicals add to the carbon atom of benzylideneanilines to form anilino radicals, which are protonated in the presence of PTSA or NH(4)(+) in Me(2)SO. Reduction of the resulting aniline radical cations occurs readily by the ate complex, t-BuHgI(2)(-). In the absence of a proton donor, t-BuHgI will also transfer a hydrogen atom to the anilino radical to give the reductive alkylation product. Protonation can promote a free radical chain process involving electron transfer by substrate activation and/or by increasing the electron affinity of the intermediate radicals. Since the adduct radicals formed from benzylideneanilines are more easily protonated than the parent Schiff bases, PTSA but not NH(4)(+) demonstrates substrate activation, although both proton donors promote the free radical reaction.  相似文献   

15.
On Chalcogenolates. 148. Reaction of Formamide with Carbon Disulfide. 2. Crystal Structure of Potassium N-Formyl Dithiocarbamate K[S2C? NH? CO? H] crystallizes with Z = 16 in the monoclinic space group Cc with cell dimensions a = 13.187(13) Å, b = 12.928(3) Å, c = 13.962(6) Å, and β = 101.75 (3)°. The crystal structure has been determined from single crystal X-ray data measured at 20°C and refined to a conventional R of 0.034 for 1857 independent reflections (Rw = 0.038). The compound crystallizes by building a super-structure, which is based on an H-bridged 16-membered ring-system, formed by four[S2C? NH? CO? H]? anions. Two different binuclear K+ coordination polyhedra are formed with two oxygen and two sulfur atoms in common.  相似文献   

16.
Chandra S  Buschbeck R  Lang H 《Talanta》2006,70(5):1087-1093
The synthesis of CH(2)CHCH(2)OCH(2)[15-crown-5] (III) is achieved by the treatment of HOCH(2)- [15-crown-5] (I) with equimolar amounts of CH(2)CHCH(2)Br (II) in the presence of KOH. The hydrosilylation of III with Si(CH(2)CH(2)CH(2)SiMe(2)H)(4) (IV) in the presence of the Karstedt catalyst affords the crown ether end-capped carbosilane dendrimer Si(CH(2)CH(2)CH(2)Si-Me(2)CH(2)CH(2)CH(2)OCH(2)[15-crown-5])(4) (V). PVC-based membranes of V as ionophore with sodium tetraphenyl borate (NaTPB) as anion excluder and dioctyl phthalate (DOP), diphenyl ether (DPE), dibutyl amine (DBA) and dibutyl phthalate (DBP) as plasticizing solvent mediators were prepared and investigated as NH(4)(+)-selective electrode. The response of the electrode was linear with a Nernstian slope of 53.3mV/decade over an NH(4)(+) ion concentration range of 7.60x10(-6) to 1.0x10(-1)M and a detection limit of 3.9x10(-6)M. The response time to achieve a steady potential for NH(4)(+) ions was between 6 and 10s, and the electrode is suitable for use within the pH range of 2.2-8.5. The selectivity relative to alkali, alkaline earth, and transition heavy metal ions is good. The newly developed ionophore showed higher NH(4)(+) selectivity over K(+) ( [Formula: see text] ) and Na(+) ( [Formula: see text] ). The electrode could be used for at least 45 days without considerable alteration in its potential. The electrode also shows a better working concentration range and slope in comparison to other NH(4)(+)-selective electrodes reported in literature.  相似文献   

17.
Catena(dimethylammonium-bis(mu2-chloro)-chlorocuprate), (CH3)2NH2CuCl3, forms chains of Cu2Cl6(2-) bifold dimers linked along the structural chain axis by terminal chlorides forming long semicoordinate bonds to adjacent dimers. The structural chains are separated by dimethylammonium ions that hydrogen bond to chloride ions of the dimers. A structural phase transition below room temperature removes disorder in the hydrogen bonding, leaving adjacent dimers along the chain structurally and magnetically inequivalent, with alternating ferromagnetic and antiferromagnetic pairs. The coupled dimers are magnetically isolated from each other along the structural chain axis by the long semicoordinate Cu-Cl bond. However, the dimers couple to like counterparts on adjacent chains via nonbonding Cl...Cl contacts. The result is two independent magnetic chains, one an alternating antiferromagnetic chain and the other an antiferromagnetic chain of ferromagnetically coupled copper dimers, which run perpendicular to the structural chains. This magnetostructural analysis is used to fit unusual low-temperature (1.6 K) magnetization vs field data that display a two-step saturation. The structural phase transition is identified with neutron scattering and capacitance measurements, and the X-ray crystal structures are determined at room temperature and 84 K. The results appear to resolve long-standing confusion about the origins of the magnetic behavior of this compound and provide a compelling example of the importance of two-halide magnetic exchange.  相似文献   

18.
Ammonium dicyanamide NH(4)[N(CN)(2)] was synthesized through aqueous ion exchange. The crystal structure was investigated by single-crystal X-ray diffraction (P2(1)/c, a = 378.67(6) pm, b = 1240.9(3) pm, c = 911.84(14) pm, beta = 91.488(18) degrees, Z = 4). It derives from the CsCl structure type. Medium strong hydrogen bonds between NH(4)(+) and [N(CN)(2)](-) ions are indicative of the observed formation of dicyandiamide H(4)C(2)N(4) during heating. According to DSC and temperature-dependent X-ray powder diffractometry, this isomerization is exothermic and occurs between 102 and 106 degrees C in the solid. The reaction represents the isolobal analogue to the classical synthesis of urea by heating NH(4)OCN. While other alkali and alkaline earth dicyanamides undergo trimerization or polymerization of their anions during heating, ammonium dicyanamide thus shows a different reactivity.  相似文献   

19.
α-Fe(Ga)OOH的液相催化合成及表征   总被引:1,自引:0,他引:1  
曹付玲  马燕  刘辉  魏雨 《化学学报》2009,67(10):1057-1062
采用液相催化相转化法, 以Fe(III)与Ga(III)的共沉淀为前驱物合成了α-Fe(Ga)OOH微粒. 探讨了镓离子的掺杂浓度和Fe(II)离子用量等因素对合成α-Fe(Ga)OOH微粒的影响, 并对产物进行了X射线衍射(XRD)、红外光谱(IR)、扫描电镜(SEM)、透射电镜(TEM)、电子衍射(ED)表征. 结果表明: 初始pH=9, nFe(II)/nFe(III)=0.02, nGa(III)/nFe(III)=0.18时, 在沸腾回流条件下可制备出类多面体形的α-Fe(Ga)OOH微粒, 镓离子的掺杂对α-FeOOH的形成起了形貌调控作用, 电子衍射数据表明该α-Fe(Ga)OOH为单晶粒子.  相似文献   

20.
Low-temperature neutron scattering spectra of diammonium dodecahydro-closo-dodecaborate [(NH(4))(2)B(12)H(12)] reveal two NH(4)(+) rotational tunneling peaks (e.g., 18.5 μeV and 37 μeV at 4 K), consistent with the tetrahedral symmetry and environment of the cations. The tunneling peaks persist between 4 K and 40 K. An estimate was made for the tunnel splitting of the first NH(4)(+) librational state from a fit of the observed ground-state tunnel splitting as a function of temperature. At temperatures of 50 K-70 K, classical neutron quasi-elastic scattering appears to dominate the spectra and is attributed to NH(4)(+) cation jump reorientation about the four C(3) axes defined by the N-H bonds. A reorientational activation energy of 8.1 ± 0.6 meV (0.79 ± 0.06 kJ/mol) is determined from the behavior of the quasi-elastic linewidths in this temperature regime. This activation energy is in accord with a change in NH(4)(+) dynamical behavior above 70 K. A low-temperature inelastic neutron scattering feature at 7.8 meV is assigned to a NH(4)(+) librational mode. At increased temperatures, this feature drops in intensity, having shifted entirely to higher energies by 200 K, suggesting the onset of quasi-free NH(4)(+) rotation. This is consistent with neutron-diffraction-based model refinements, which derive very large thermal ellipsoids for the ammonium-ion hydrogen atoms at room temperature in the direction of reorientation.  相似文献   

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