A single-laboratory validated method for the generation of DNA barcodes for the identification of fish for regulatory compliance

The U.S. Food and Drug Administration is responsible for ensuring that the nation's food supply is safe and accurately labeled. This task is particularly challenging in the case of seafood where a large variety of species are marketed, most of this commodity is imported, and processed product is difficult to identify using traditional morphological methods. Reliable species identification is critical for both foodborne illness investigations and for prevention of deceptive practices, such as those where species are intentionally mislabeled to circumvent import restrictions or for resale as species of higher value. New methods that allow accurate and rapid species identifications are needed, but any new methods to be used for regulatory compliance must be both standardized and adequately validated. "DNA barcoding" is a process by which species discriminations are achieved through the use of short, standardized gene fragments. For animals, a fragment (655 base pairs starting near the 5' end) of the cytochrome c oxidase subunit 1 mitochondrial gene has been shown to provide reliable species level discrimination in most cases. We provide here a protocol with single-laboratory validation for the generation of DNA barcodes suitable for the identification of seafood products, specifically fish, in a manner that is suitable for FDA regulatory use.     

A combinatorial approach for development of materials for optical sensing of gases

We present a combinatorial approach for development of materials for use in optical gas sensors, with oxygen being used as an exemplary target gas. Combinatorial chemistry is shown to be a promising tool for speeding up the search for new sensor materials. The method is based on the use of various polymers, solvents, indicators, plasticizers, and other additives. Solutions of the respective materials are prepared in appropriate organic solvents, and a robotic station is programmed to mix the components. Spots of the sensing materials are deposited in the wells of glass substrates resembling microtiterplates. After drying off the solvent, the sensor spots are automatically analyzed in a test stand, where they are exposed to a carrier gas containing oxygen in various concentrations. Changes in the decay time of fluorescence of the indicator probes are measured and used (along with sensor response time) as a main criterion for sensor assessment. It is shown that the combinatorial approach can reduce the time and effort needed to establish libraries of sensor materials by a factor of at least 1000. We describe in detail the device for preparation of sensor libraries and for testing the respective materials. The potential of the system is demonstrated for the characterization of optical oxygen sensors.     

Biomaterials for molecular electronics development of optical biosensor for retinol

Molecular electronics involves expertise from several branches of science. Various biomaterials and electronics are involved in the fabrication of such devices. While passive biomaterials are involved in anchoring the active biomolecules, the latter are involved in switching and/or signal transduction. In the present investigation we have used a glass-capillary-based approach to design a biosensor for retinol. The sensing element is retinol-binding protein (RBP). The affinity of retinoic-acid-horseradish peroxidase (conjugate) to RBP is tested using a surface plasmon resonance technique. A simple photomultiplier-tube-based system is exploited to monitor the chemiluminescent signal generated upon reaction of hydrogen peroxide and luminol with the conjugate bound to RBP. The photomultiplier tube is directly coupled to a computer for data logging.     

Use of Solar Power for Heat Generation for Household Application

The requirement of getting continuous electricity at low cost is essential but challenging. Especially in the undeveloped countries there is no sufficient electricity for the people to do their daily regular works. In order to overcome this problem different renewable energy sources are sought and being explored. One of the approaches is to have a cooking system that is energized from the solar power, not directly using a solar cooker but by storing the energy in the form of heat that can be utilized as per requirement. This paper reports the design and fabrication of an alternative system to generate heat using solar radiation. This chulha is helpful in effective heating with the help of solar radiations at lower costs. A cooking technology is presented consisting of a solar panel directly connected to an electric heater inside of a well-insulated chamber. An insulated container with fixed amount of oil is heated up. The heat is found to be retained in the chamber even after sun set which is sufficient for heating water for making tea. The possible causes of temperature drop and possible remedy has been pointed out and discussed in this paper.     

A method for correlations analysis of coordinates: applications for molecular conformations

We describe a new method to analyze multiple correlations between subsets of coordinates that represent a sample. The correlation is established only between specific regions of interest at the coordinates. First, the region(s) of interest are selected at each molecular coordinate. Next, a correlation matrix is constructed for the selected regions. The matrix is subject to further analysis, illuminating the multidimensional structural characteristics that exist in the conformational space. The method's abilities are demonstrated in several examples: it is used to analyze the conformational space of complex molecules, it is successfully applied to compare related conformational spaces, and it is used to analyze a diverse set of protein folding trajectories.     

Theory for a general system of increments for the properties of polycyclic hydrocarbons

A general non-empirical system of increments for the calculation of molecular properties of polycyclic, conjugated hydrocarbons is proposed. It is based on identifying the conjugation circuits in all Kekulé structures and assuming an increment from each circuit comparable to the magnitude of the property in the associated annulene. These increments are calculated by a simple free-electron theory with a Kuhn-type harmonic potential. No adjustable parameters are used to fit the property being calculated. The relation between this method and a very simplistic VB formalism is considered. The reason why the non-empirical parametrization of such crudely approximated formalism may lead to rather improved results is discussed in some detail. This novel system of increments is tested for two properties, resonance energy and magnetic ring-currents. The results obtained by this method correlate well with those of standard techniques. This system of increments for estimating local properties of molecules gave particularly gratifying results when used to predict ring-current intensities. It is hoped that this method, being equally applicable to other properties, will prove to be a valuable instrument for the rapid estimation of a wide range of properties of polycyclic, conjugated hydrocarbons. A preliminary account of this work was presented at the International Symposium on Aromaticity held at Dubrovnik, Croatia, Yugoslavia, September 3–5, 1979     

Development of equations for differential and integral enthalpy change of adsorption for simulation studies

We present equations to calculate the differential and integral enthalpy changes of adsorption for their use in Monte Carlo simulation. Adsorption of a system of N molecules, subject to an external potential energy, is viewed as one of transferring these molecules from a reference gas phase (state 1) to the adsorption system (state 2) at the same temperature and equilibrium pressure (same chemical potential). The excess amount adsorbed is the difference between N and the hypothetical amount of gas occupying the accessible volume of the system at the same density as the reference gas. The enthalpy change is a state function, which is defined as the difference between the enthalpies of state 2 and state 1, and the isosteric heat is defined as the negative of the derivative of this enthalpy change with respect to the excess amount of adsorption. It is suitable to determine how the system behaves for a differential increment in the excess phase adsorbed under subcritical conditions. For supercritical conditions, use of the integral enthalpy of adsorption per particle is recommended since the isosteric heat becomes infinite at the maximum excess concentration. With these unambiguous definitions we derive equations which are applicable for a general case of adsorption and demonstrate how they can be used in a Monte Carlo simulation. We apply the new equations to argon adsorption at various temperatures on a graphite surface to illustrate the need to use the correct equation to describe isosteric heat of adsorption.     

SSC: a tool for constructing libraries for systematic screening of conformers

Even a relatively small molecule with 10-20 atoms might have a few local minima, which correspond to different conformers. The number of local minima quickly increases with molecular size and the most common algorithms, driven by calculated forces, frequently identify a minimum, which is closest to the initial structure, rather than the most stable conformer. Here we discuss how to perform a systematic search of the conformational space for a chain-like molecule. Our approach is fully automated and a user has control which chemical bonds will be probed and with which increments. Moreover, whole fragments of the molecule, which are adjacent to each selected rotational bond, are rotated in a properly selected cylindrical coordinate system and unchemical hybridizations and some "clashes" between neighboring groups, which are common when standard Z-matrices are used, are avoided. A library of potentially relevant conformers is created with a tool, which we call SSC, denoting Systematic Screening of Conformers. Each member of the library is prescreened at a predefined level of theory and the most promising conformers are identified. Finally, they are further evaluated at a higher level of theory to identify the most stable structures and their physicochemical properties. As an example, we demonstrate the results of this approach for 2'-deoxycytidine.     

Bump-hunting for the proficiency tester--searching for multimodality

Kernel density estimation is a method for producing a smooth density approximation to a dataset and avoiding some of the problems associated with histograms. If it is used with a degree of smoothing determined by a fitness for purpose criterion, it can be applied to proficiency test data in order to test for multimodality in the z-scores. The bootstrap is an essential additional technique to determine how rugged the initially estimated kernel density is: the random resampling of the data in the bootstrap simulates a complete blind repeat of the proficiency test. In addition, useful estimates of the standard error of a mode can be thus obtained. It is suggested that a mode and its standard error can be used as an assigned value and its standard uncertainty.     

Layered Zeolite for Assembly of Two-Dimensional Separation Membranes for Hydrogen Purification

Membrane separation is an energy-efficient and environmentally friendly process. Two-dimensional (2D) molecular sieving membranes featuring unique nanopores and low transport resistance have the potential to achieve highly permeable and selective mixture separation with low energy consumption. High-aspect-ratio zeolite nanosheets with intrinsic molecular-sieving pores perpendicular to the layers are desirable building blocks for fabricating high-performance 2D zeolite membrane. However, a wider application of 2D zeolitic membranes is restricted by the limited number of recognized zeolite nanosheets. Herein, we report a swollen layered zeolite, ECNU-28, with SZR topology and eight-member ring (8-MR, 3.0 Å×4.8 Å) pores normal to the nanosheets. It can be easily exfoliated to construct 2D membrane, which shows a high hydrogen selectivity up to 130 from natural gas and is promising for hydrogen purification and greenhouse gas capture.     

Analysis of wine for penicillin

This study addresses the question of whether the antibiotic Penicillin, which is produced by the common mold Penicillium notatum, could possibly become a contaminate of wine during the fermentation process. The significance of this study is related to the potential health effects this agent might produce in those consumers who have an allergic response to Penicillin. It has been estimated that between 6% and 8% of the American population is subject to this type of allergic response. A method is developed for the detection of penicillin in wines using high-pressure liquid chromatography. We demonstrate that penicillin G hydrolyzes rapidly in wine with first-order kinetics, and the half-life of this antibiotic is 147 min in a typical commercial wine. An analysis of a number of commercial wines shows no evidence of the presence of penicillin, which should negate the question of any allergic response associated with this potential contaminate.     

Protocol for uncertainty assessment of half-lives

The apparent tendency to underestimate the uncertainty of experimentally determined half-life values of radionuclides is discussed. It is argued that the uncertainty derived from a least-squares analysis of a decay curve is prone to error. As it is quite common for a series of activity measurement results to be autocorrelated, the prerequisite of randomness of data for common statistical tests to apply is not fulfilled. In this work, an alternative data analysis method is applied that leads to a more realistic uncertainty budget. The uncertainty components are being subdivided in three categories according to the relative frequency at which they occur, an appropriate uncertainty propagation formula applied and then the total uncertainty obtained from an independent sum. An attempt is made to apply the protocol to problematic cases in literature, yet it is clear that the reporting is usually incomplete for a full uncertainty analysis. Suggestions are made for a concise but more complete reporting style, for the sake of traceability.     

General method for modification of liposomes for encoded assembly on supported bilayers

An amphiphilic oligonucleotide species ((C18)2-DNA) is presented as a generally useful reagent to display encoded tether sequences on the surface of phospholipid assemblies. (C18)2-DNA inserts into preformed vesicles and proteoliposomes of arbitrary composition, content, and origin using a simple and gentle procedure and is a significant improvement over the previously described method particularly since it allows postmodification of any phospholipid assembly without the need for special lipids carrying reactive headgroups. DNA-modified vesicles can then be tethered, via DNA hybridization, onto a supported phospholipid bilayer displaying the complementary sequence. The encoding capability of the tether can be exploited to form an array of tethered vesicles spatially defined by the DNA sequence displayed on the surface and demonstrates that (C18)2-DNA is stably associated with a membrane to allow sorting. Vesicles tethered in this way show two-dimensional mobility, reflecting the fluidity of the supporting bilayer, and promises to be a useful system with which to study vesicle-vesicle interactions.     

Micelles for the self-assembly of "off-on-off" fluorescent sensors for pH windows

A micellar approach is proposed to build a series of systems featuring an "off-on-off" fluorescent window response with changes in pH. The solubilizing properties of micelles are used to self-assemble, in water, plain pyrene with lipophilized pyridine and tertiary amine moieties. Since these components are contained in the small volume of the same micelle, pyrene fluorescence is influenced by the basic moieties: protonated pyridines and free tertiary amines behave as quenchers. Accordingly, fluorescence transitions from the "off" to the "on" state, and viceversa, take place when the pH crosses the pK(a) values of the amine and pyridine fragments. To obtain an "off-on-off" fluorescent response in this investigation we use either a set of dibasic lipophilic molecules (containing covalently linked pyridine and tertiary amine groups) or combinations of separate, lipophilic pyridines and tertiary amines. The use of combinations of dibasic and monobasic lipophilic molecules also gives a window-shaped fluorescence response with changes in pH: it is the highest pyridine pK(a) and the lowest tertiary amine pK(a) that determine the window limits. The pK(a) values of all the examined lipophilic molecules were determined in micelles, and compared with the values found for the same molecules in solvent mixtures in which they are molecularly dispersed. The effect of micellization is to significantly lower the observed protonation constants of the lipophilized species. Moreover, the more lipophilic a molecule is, the lower the observed logK value is. Accordingly, changing the substituents on the basic moieties or modifying their structure, tuning the lipophilicity of the mono- or dibases, and choosing among a large set of possible combination of lipophilized mono- and dibases have allowed us to tune, almost at will, both the width and the position along the pH axis of the obtained fluorescent window.     

Prospects for development of a technology for production of butene-1

Industrial technologies for production of butene-1 are described, including the most promising process for recovery of butene-1 of polymerization purity from C₄ fractions formed in pyrolysis and catalytic cracking of hydrocarbons. It is shown that this technology can be improved and suggested to use as a raw material the recycle butene fraction formed from these C₄ fractions upon isolation of 1,3-butadiene and isobutene. A technological scheme for recovery of butene-1 of polymerization purity is suggested.     

Shortcut method for evaluation and design of a hybrid process for enantioseparations

Hybrid processes for enantioseparations have a considerable potential for reducing investment and operational costs. An example is the combination of simulated moving bed (SMB) chromatography and selective crystallisation. However, the design of integrated processes is a difficult task. A shortcut method is presented that can serve as a tool for design and estimation of the potential of such processes. The approach requires only limited experimental data and thus allows for systematic parameter studies. The method is based on the determination of the purity-performance characteristic of the SMB process and rigorous application of mass balances. The use of relative mass fluxes allows derivation of simple algebraic expressions for essential process parameters. The significant potential of combining SMB and crystallisation is demonstrated for the example of the separation of mandelic acid enantiomers.     

Combination of electroreduction with biosorption for enhancement for removal of hexavalent chromium

Hexavalent chromium is one of the most toxic heavy metals in aqueous solutions. It has been well documented that the brown seaweed can be used as a promising biosorbent for the sequestration of this heavy metal from wastewater. However, the uptake of Cr(VI) is reportedly a rather slower process; the sorption equilibrium can only be established after a few days, much slower than a few hours for the trivalent chromium ion. In this study, we developed a novel technology of electrochemically assisted biosorption (ECAB) system for the enhancement of the treatment efficiency. It was found through our study that the removal efficiencies of Cr(VI) and total chromium were greatly enhanced by 48.1% and 51.3%, respectively, with the application of -1.0V in the ECAB system. The conversion of Cr(III) due to the electroreduction of Cr(VI) and the higher pH due to the cathodic H(2) evolution created a favorable condition for the uptake of chromium onto the modified seaweed (MSW). The reduction and adsorption of Cr(VI) by MSW was proved to play a minor role in the removal. Both direct electroreduction and indirect electroreduction by atomic H(*) contributed to the reduction of Cr(VI).     

A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation

A generalization of Wegschcider's condition concerning equilibrium constants in chemically reacting systems is formulated, which is then proved to be a necessary and sufficient condition for detailed balancing. In order to include a large multitude of rate laws, a generalized mass action kinetics is considered which comprises usual mass action kinetics and all reversible enzyme kinetics and which is consistent with basic postulates of irreversible thermodynamics for ideal mixtures. Reaction systems of arbitrary stoichiometry are considered. They may contain reactants with fixed concentrations, as is characteristic for models of biochemical reaction networks. Existence, uniqueness, and global asymptotic stability of equilibrium states for reaction systems endowed with generalized man action kinetics are proved. Using these results, he generalized Wegscheider condition is shown to be a sufficient criterion for the applicability of the quasi-steady-state approximation.     

The definition of basic TEDS of IEEE 1451.4 for sensors for an electronic tongue and the proposal of new template TEDS for electrochemical devices

It is important to define a standard method to store basic sensor information, such as the type and the structure of sensors for an electronic tongue system and there is no such method defined in the IEEE 1451.4 transducer electronic data sheet (TEDS) so far. The major challenge is to choose a suitable standard template that can be used with sensors for electronic tongues. However, the standard templates provide an imprecise specification when used with sensing devices for electronic tongues. In this paper, we present definitions of the basic TEDS of IEEE 1451.4 for sensors for an electronic tongue system and propose a new template TEDS for IEEE 1451.4 for potentiometric devices.