The crystal structure and molecular conformation of threo 5-methylmetadone in relation to opioid receptor binding

Crystals of the hydrochloride salt of the biologically inactive threo isomer of 5-methylmethadone, C₂₂H₃₀ONCl, are monoclinic space group P2₁ with unit cell dimnsionsa = 11.019 Å, b = 8.6153Å, c = 10.680Å and β = 93.026°. The observed conformation is one in which the nitrogen bearing chain is extended with the substituents on C(5) and C(6) nearly eclipsed, a feature compatible with NMR studies and molecular mechanics calculations. The very potent agonist (5S, 6S)-erythro-5-methylmethadone has a solid state conformation in which the N atom is rotated back toward the phenyl rings [C(4)-C(5)-C(6)-N = 97°]in agreement with molecular mechanics calculations. The fact that the more potent enantiomers, (6R)-methadone and (5S)-isomethadone, and the inactive threo isomer are observed in the extended solid state conformation in contrast to (5S, 6S)-erythro-5-methylmethadone is consistent with three different models for their interaction with opioid receptors. It is proposed that the more likely of these involves a receptor bound conformation of (6R)-methadone and (5S)-isomethadone that resembles the conformation of (5S, 6S)-erythro-5-methylmethadone or that opioid receptors recognize both gauche-like and extended conformations.     

Preparation,crystal structure and reactions of a new spin-labelling reagent,cis-3,5-dibromo-4-oxo-2,2,6,6- tetramethylpiperidin-1-yloxy : Crystal structure of a derived bis-nitroxide

Methods for the preparation of cis - 3,5 - dibromo - 4 - oxo - 2,2,6,6 - tetramethylpiperidin -1 - yloxy (2b) and its use as a convenient, selective spin-labelling reagent for amino functions, are described. The crystal and molecular structures of 2b and the bis-nitroxide 4 - [(2',2',5',5' - tetramethylpyrrolin -1 - yloxy) - 3' - carbonyloxy] - 2, 2,6,6 - tetramethyl - 3,5 - dibromo - 3,4 - dehydropiperidin - 1 - yloxy (3) [obtained on treatment of 2b with triethylamine] have been determined by conventional heavy-atom techniques. In 2b the individual molecules have mirror symmetry with the bromine atoms equatorial. The N-O bond length is 1.278(5) Å, CN?C is 125.1(3)° and the N-O bond makes an angle of 24.2° with the CN?C plane. In 3 there are two different nitroxide groups. The pyrrolinyloxy ring is virtually planar with a N-O bond length of 1.252(13) Å and CN?C of 113.1(10)°. The 6 -membered ring exists in a sofa conformation with a pseudoaxial Br atom. Its nitroxide group is tetrahedrally distorted. The N-O bond length is 1.268(15) Å, CN?C is 121.7(10)° and the N-O bond makes an angle of 16.0° with the CN?C plane. The packing of 3 is dictated by a short Br... .O secondary bond of 3.09(1) Å, 0.28 Å less than the sum of the van der Waal's radii resulting in dimeric units related by a centre of symmetry.     

Microbiological transformations—XII: Microbiological reduction of racemic 1-(2',2',3'-trimethyl-cyclopent-3'-en-1'-yl)propan-2-one and 1-(2',2',3'-trimethyl-cyclopent-3'-en-1'-yl)butan-2-one by rhodotorula mucilaginosa

The microbiological reduction of (±)-l-(2',2',3'-trimethylcyclopent-3'-en-l'-yl)-propan-2-one (4) and (±)-1-(2',2',3'-trimethylcyclopent-3'-en-l'-yl)-butan-2-one (5) by Rhodotorula mucilaginosa was investigated. Both enantiomers of 4 are reduced stereospecifically to corresponding alcohols; (+)-(2S, l'R)-(2',2',3'-trimethylcyclopent-3'-en-l'-yl)-propan-2-ol (6) and (-)-(2S,l'S)-(2',2',3'-trimethylcyclopent-3'-en-l'-yl)-propan-2-ol (7). p ]The substrate selectivity in the reduction of 5 was observed: R enantiomer of 5 yields stereospecifically (+)-(2S,1'R)-(2',2',3'-trimethylcyclopent-3'-en-l'-yl)-butan-2-ol (8) while S(-)5 remains unchanged.     

Die kristall- und molekülstruktur von 10,11-(4',5'-dimethylbenzo)-9,12-dithia- trans-bicyclo[6.4.0]dodeca-2,4,6,10-tetraen,einem trans-annelierten cycloocta-1,3,5-trien

The compound 10,11 - (4',5' - dimethylbenzo) - 9,12 - dithia - trans - bicyclo[6.4.0]dodeca - 2,4,6,10 - tetraen (1a) has been determined by X-ray analysis from three-dimensional film data and refined by least-squares techniques to R = 0.10. The dimensions of the unit cell containing 4 molecules are a = 10.61(2) Å, b = 6.53(1) Å, c = 19.96(2) Å),β = 102.2(1)o, the space group is P2₁/c. The heterocyclic and the carbocyclic rings are trans - annelated. Consequently the included angles of the bridgehead atoms deviate from the ideal tetrahedral angles and the bond between the atoms C(9) and C(16) is significantly shortened. The cyclooctatriene ring has a distorted boat conformation.     

Crystal structures of 3-phenylpropenal thiosemicarbazone and its nickel and zinc chelates

3-Phenylpropenal thiosemicarbazone hydrate C₆H₅-HC=CH-CH=N-NH-C(S)-NH₂ · H₂O (HL · H₂O, I) and two chelates [Ni(L)₂] · nCH₃OH (II) and [Zn(L)₂] (III) are studied by X-ray diffraction. The crystals of I are orthorhombic: a = 6.227(1) Å, b = 7.763(2) Å, c = 25.585(5) Å, β = 90°, space group P2₁2₁2₁, Z = 4, R = 0.0426. A nonplanar molecule of I has an E conformation. The crystals of II are triclinic: a = 6.551(2) Å, b = 10.752(3) Å, c = 10.885(3) Å, α = 64.751(5)°, β = 82.753(5)°, γ = 89.857(5)°, space group, Z = 1, R = 0.0661. In a centrosymmetric molecule of II, the central atom coordinates two deprotonated ligands L through the immine nitrogen atom and thioamide sulfur atom at the vertices of a distorted square. The crystals of III are monoclinic: a = 25.342(2) Å, b = 9.150(2) Å, c = 21.340(3) Å, α = 90°, β = 111.84(2)°, γ = 90°, space group C2/c, Z = 8, R = 0.0556. In a molecule of complex III, two deprotonated bidentate ligands L are coordinated by the zinc ion through the immine nitrogen atoms and thioamide sulfur atoms to form a distorted tetrahedron at the central atom. In both II and III, ligand L after coordination by the metal ion changes the E conformation with respect to the N(1)-C(2) bond for the Z conformation. In crystals I-III, molecules are packed to form infinite layers parallel to the planes (001) and (010).     

Synthesis of 2'-deoxy-1-deazawyosine: A stabile 2'-deoxyisostere of a rare trna constituent

2'-Deoxy-1-deazawyosine (3a), an isostere of the rare tRNA constituent wyosine (la) and its α-anomer have been synthesized via glycosylation of the nucleobase 5a with the halogenose 6. In contrast to the labile parent 1a, the isostere is highly stabile against hydrolysis even as 2'-deoxynuclcoside. The stability of 3a is due to the low susceptibility of the pyrrol ring to protonation. The rapid hydrolysis of wyosine (la) compared to guanosine is explained by a favoured solvatization of the molecule being freezed in the anti-conformation.     

Elimination of the nitrile group from o-aminonitriles—IV: A new and efficient synthesis of 3,5-diarylaminobenzenes from arylidenemalonodinitriles and 1-arylethylidenemalonodinitriles

A synthesis of a variety of 5'-amino-m-terphenyls (6) and 3,5-diarylaminobenzenes through an efficient elimination of cyano groups from 5'-amino-4',6'-dicyano-m-terphenyls (4) using sodium hydroxide in ethanol at 220°, is described, The starting o-aminonitriles (4) are conveniently prepared from arylidenemalonodinitriles (1) and 1-arylethylidenemalonodinitriles (2). This strategy is applied for the synthesis of an aminoquaterphenyl (13) and a diaminoquinquephenyl (16).     

Crystal and molecular structure of cannabispiran and its correlation to dehydrocannabispiran : Two novel cannabis constituents

Full details are provided on the isolation, spectral data and X-ray crystallographic analysis of cannabispiran (1) [7' - hydroxy - 5' - methoxyspiro(cyclohexane - 1,1' - indan) - 4 - one] and its correlation to Δ² -cannabispiran (dehydrocannabispiran) (2); both of which are novel spiro-compounds isolated from the leaves of Cannabis sativa L. Cannabispiran (1) crystallizes in the space group Pbca, cell dimensions: a = 10.388(5) Å, b = 14.754(7)Å, c = 16.950(8)Å, with eight molecules in the unit cell. The structure model was refined, using 852 observed reflections collected by counter methods, to an R-factor of 0.074 and a weighted R_w of 0.054.     

Analytical applications of the reaction of thorium with benzenephosphonic acid

Benzenephosphonic acid quantitatively precipitates thorium as Th(C₆H₅PO₃)₂·3H₂O at pH values as low as 0.5. The compound may be dried at 140° to 180° C and weighed, as a gravimetric means of determining thorium. On ignition, Th (C₂H₅PO₃)₂ 3 H₂O undergoes decomposition at 240° to 300° C to form Th(C₆H₅PO₃)₂·2H₂O, at 450° to 650° C to form Th(HPO₄)₂·2H₂O and finally at 800° to 1000° C to form Th(HPO₄)₂. The latter compound is stable to 1200° C.Potentiometrically (pK₁' = 0.91, pK₂' = 6.41) and spectrophotometrically (pK₁' = 0.96, pK₂' = 6.51) determined pK' values are reported. Absorption spectra of C₆H₅PO₃H₂, C₆H₅PO₃H^- and C₆H₅PO₃^-2 are reported. The solubility of Th (C₆H₅PO₃)₂·3H₂O was studied as a function of pH and the average value of the solubility product (K_sp = 4s³) was found to be 3.24·10^-31.     

Reactions of β-substituted amines-IV: Kinetics and stereochemistry of the thermal to (r) 3-chloro-1-ethylpiperidine,and the stereo-chemical course of their reactions with nucleophiles

The rate of the thermal rearrangement of (S) 2 chloromethyl-1-ethylpyrrolidine [(S)-1a] to (R)-3-chloro-1-ethylpiperidine [(R) 2a] has been examined at three temperatures in benzene by PMR and polarimetry. The rearrangement was shown to be completely stereospecific and to obey a simple first order rate law. The calculated E_a ΔH3 and ΔS3 were 22 ± 2 $\text{kcal}\text{mole}$ (25°), 21 ± 2.5 $\text{kcal}\text{mole}$ (25°) and - 10 ± 2 e.u. (0°K) respectively. The effect of solvents having differing dielectric constants was also studied. A transition state 9'a and an ion pair intermediate 3a are suggested for the rearrangement. The stereochemical course of the reactions of (S)-1a, (R)-2a and (S)-2a with hydroxide and methoxide ions have been shown to be 100% stereospecific with an uncertainty of about 1%. The absolute configurations of all optically active reactants and products [(S)- and (R)-4a, (S)-4b (R)- and (S)-5a, (R)-5b, (S,S')-6a, (S,R')-7a and (R,R')-8a] were established by chemical correlations with known compounds or by ORD and chemical inference. The ring opening of both the primary and secondary aziridinium ion positions of 1-azonia-1-ethylbicyclo [3.1.0]hexane [(S)-3a] by nucleophiles proceeds entirely by S_N2 processes. The conversion of (R)-1-ethyl-3-hydroxypiperidine [(R)-5a] to (S)-2a. HCl with thionyl chloride in chloroform proceeds by inversion with 4.8% racemization, whereas the thermal rearrangement of (S)-1a to (R)-2a occurs with complete retention of absolute configuration.     

Microwave spectra of isotopic glycolaldehydes,substitution structure,intramolecular hydrogen bond and dipole moment

The microwave spectra of ¹³CH₂OH-CHO, CH₂OH-¹³CHO, and CH₂OH-CH¹⁸O are reported and have been used in combination with previously published data on other monosubstituted glycolaldehydes to determine the substitution structure of the molecule as r(CO) = 1.209 Å, r(C-O) = 1.437 Å, r(C-C) = 1.499 Å, r(O-H) = 1.051 Å, r(C-H_ald) = 1.102 Å, r(C-H_alc) = 1.093 Å, r(O β H) = 2.007 Å, r(O β O) = 2.697 Å, ∠(C-CO) = 122°44', ∠(C-C-H_ald) = 115°16', ∠(C-C-O) = 111°28', ∠(C-O-H) = 101°34', ∠(C-C-H_alc) = 109°13', ∠(H-C-H) = 107°34', ∠(O-H β O) = 120°33', ∠(H β OC) = 83°41', and ∠(O-H, C0) = 24°14'. The intramolecular hydrogen bond and the other structural parameters are discussed and compared to related molecules. The dipole moment is redetermined to be μ_a = 0.262 ±0.002 D, μ_b = 2.33 ± 0.01 D, and μ_tot = 2.34 ± 0.01 D. Relative intensity measurements yielded 195 ± 30 cm^?1 for the C-C torsional fundamental and 260±40 cm^?1 for the lowest in-plane skeletal bending mode. Computations performed by the CNDO/2 method correctly predict the observed cis hydrogen-bonded conformer to be the energetically favoured one and in addition yield some indication of the existence of at least two other non-hydrogen-bonded forms of higher energy.     

Polybrominated diphenyl ethers from Dysidea herbacea,Dysidea chlorea and Phyllospongia foliascens

The marine sponges Dysidea herbacea, D. chlorea and Phyllospongia foliascens were differentiated with difficulty in the field. D. herbacea contained 2-(2',4'-dibromophenoxy)-3,4,5-tribromophenol (1), 2-(2',4'-dibromophenoxy)-4,5,6-tribromophenol (2) and 2-(2',4'-dibromophenoxy)-3,5-dibromophenol (6). D. chlorea contained only 2-(2',4'-dibromophenoxy)-4,6-dibromophenol(3), a compound previously reported as a metabolite of D. herbacea. Phyllospongia foliascens contained 2-(3',5'-dibromo-2'-methoxy-phenoxy)-3,5-dibromoanisole (7) and a 1:2 mixture of 2-(3',5'-dibromo-2'-hydroxyphenoxy)-3,5,6-tribromophenol (8) and 2-(3',5'-dibromo-2'-hydroxyphenoxy)-3,4,5,6-tetrabromophenol (9).     

The addition of benzocyclobutenylidene to benzene : The facile rearrangement of spiro[benzocyclobutene-1,7'-cyclohepta-1',3',5'-triene] to 9a,10-dihydrobenz[α]azulene

Thermal decomposition of the sodium salts of benzocyclobutenone tosylhydrazone and 2-methylbenzocyclobutenone tosylhydrazone in benzene affords 9a,10-dihydrobenz[α]azulene 4 and trans-10-methyl-9a, 10-dihydrobenz[α]azulene 3, respectively. A mechanism involving initially the addition of the carbene benzocyclobutenylidene, or its 2-Me derivative, to the benzene ring is postulated. A proposed intermediate in the reaction, spiro [benzocyclobutene 1,7' cyclohepta-1',3',5'-triene] 12 has been synthesised, and shown to give rise to 4 under the reaction conditions. The rate of rearrangement of 12 → 4 has been measured, and the activation energy determined: E_a = 125.9 ± O.8 KJmol^?1 and A = 1.38 × lO¹⁴sec^?1. The mechanism for the rearrangement must involve ring opening of the benzocyclobutene moiety of 12 to give an o- xylylene intermediate which is postulated to possess considerable diradical character. At 71.8 °, this ring opening is 2.7 × 10⁶ times faster than the ring opening of the parent benzocyclobutene molecule. The decomposition of the sodium salt of 2-(7' -cyclohepta-1',3',5' trienyl)benzaldehyde tosylhydrazone has also been investigated and is shown to yield 4a,10-dihydrobenz[α]azulene, 9,10-dihydrobenz[α]azulene and 8,9-benzotricyclo [5.3.0.0^2.10]deca-3,5,8-triene. A mechanism involving intramolecular 1,3-dipolar addition of a diazo grouping to a cycloheptatriene Π-bond, followed by decomposition of the resulting pyrazoline intermediate, is proposed.     

Crown ethers with converging neutral binding sites: Synthesis and complexation with t-butylammonium hexafluorophosphate

The influence of substituents in close proximity to crown ether cavities, on the stability of complexes of the crown ethers with t-butylammonium salts, has been investigated. Crown ethers with intra-annular donor substituents (2–4) were prepared by the reaction of 2-acetylresorcinol (1) with polyethylene glycol ditosylates and subsequent modification of the acetyl group. Crown ethers with substituents above and below the plane of the crown ether 0 atoms were synthesized by the reaction of 2,2'-dihydroxy-1,1'-biphenyls with polyethylene glycol ditosylates. Chloromethylation of 5,5'-dimethyl-1,1'-biphenyl crown ethers (6) yielded 4,4'-bis(chloromethyl)-1,1'-biphenyl crown ethers (10). 3,3'-Disubstituted-1,1'-biphenyl crown ethers (13–24) were synthesized by the reaction of 3,3'-diallyl-2,2'-dihydroxy-1,1'-biphenyl (12) with polyethylene glycol ditosylates. The allyl groups of 13 were isomerized with sodium hydride to propen- 1-yl groups. Ozonolysis of 13 and 14 gave the corresponding dialdehydes (15 and 18) which were converted into other 3,3'-disubstituted biphenyl-20-crown-6 derivatives (RCH₂COOMe, CH₂COOH, CH₂OH, CH₂Cl, CH₂OMe, OH and Me) by standard operations. The thermodynamic stability of the complexes of these functionalized crown ethers with t-butylammonium hexafluorophosphate has been studied in deuterochloroform in competition experiments with m-xyleno-18-crown-5 and benzo-15-crown-5 as the reference compounds. The nature of the 2-substituents in the crown ethers 2 and 3 has little effect on the stability of the complexes. The stability of the complexes of 3,3'-disubstituted biphenyl crown ethers depends of ringsize and the size and nature of the substituents. The most stable complexes are those of 24 (R = Me) and 14 (R=CH=CHMe).The Me groups in 24 represent the optimum between relief of O-O repulsion in the polyether ring and steric hindrance of complexation. The propen-1-yl substituents of 14 stabilize the complex because they provide extended π-electron donor stabilization. Substitution at the 4- and 4'-positions of the aryl groups has little effect on the stability of the complexes.     

Configurationally and conformationally homogeneous cyclic n-aryl sulfimides—IV : Synthesis,configuration and stereochemistry of the rearrangement of 1,3-di-thiane-1-N-p-chlorophenylimides

1,3-Dithiane-1-N-p-chlorophenylimides (1,4-9) were prepared and their configuration and conformation was determined by ¹H and ¹³C NMR. The compounds were rearranged to the corresponding 2-(2'-amino-5'-chlorophenyl)-1, 3-dithianes (1U,4U,9U). The rearrangement reactions took place with ?95% stereospecifity. The mechanism of the reaction was investigated with the aid of analogs specifically deuterated at C-2.     

Synthesis of some analogues of nucleoside 5′-triphosphates

Reaction of propane -1,3- disulphonyl chloride with the appropriate 5' - amino - 5'.- deoxyribonucleoside gave 5' - deoxy -5′-(3- sulphopropanesulpho5' - Deoxy - 5' - p- sulphaminobenzenesulphonylaminothymidine (8) was obtained by treatment of 5' - p- aminobenzenesulphonylamino - 5' -deoxythymidine (10) with SO₃,-triethylamine. This reaction gave also some 5'-p- aminobenzenesulphonylamino - 5' - deoxy - 3' - O - sulphothymidine (12). Compounds 2 and 3 were inactive when tested for inhibitory activity against E.coli RNA polymerase holoenzyme. Compounds 1 and 8 inhibited E.coli DNA polymerase I non-competitively at relatively high concentrations. Compound 4 was without significant inhibitory activity against HSV-1 DNA polymerase.     

Total syntheses of cross-conjugated carotenals

Total syntheses of the cross-conjugated carotenals renierapurpurin-20-al (χ,χ-caroten-20-al, 2), (2R,2' R)-tetradesoxybacterioruberin-20- al ((2R,2'R)-2,2'- bis-(3-methylbutyl)-3,4,3',4'-tetrahydro-ψ,ψ -caroten-20-al, 3) and (2R,6R,2'R, 6' R)-2,2'dimethyl-decapreno -?,? -caroten -25-al (4) from the common intermediate 8,8'-diapo-20-acetoxycarotene 8,8' dial (5) are described. The cross conjugated 20-(2,3 4-trimethylbenzal)renierapurpurin (16) has also been synthesized     

The molecular structure of cis- and trans-bicyclo [4.2.0]-octane in the gas phase as studied by electron diffraction and molecular mechanics

The molecular structure of Cis- and trans-bicyclo[4.2.0]octane in the gas phase was studied. Molecular mechanics calculations applying Boyd's force Held were used for constraining differences between structural parameters during least squares analysis and for calculating vibrational amplitudes. The cyclohexane ring was found to have a distorted chair conformation, the ring in the cis isomer being flattened along the junction and more twisted in the other part. For the trans compound the reverse is true. The following structural parameters were obtained (r_a-structure):cis: r(C-C)_av. = 1.535 Å. Cyclohexane ring: average bond angle 112.9°; average torsional angle 48°. Cyclobutane ring: average bond angle 88.9°; puckering 157°. The dihedral angle between the bisecting planes of the C(2)-C(1)-C(6)-C(5) and C(8)-C(1)-C(6)-C(7) torsional angles, is 119° - the “connection angle” of the two rings.trans: r(C-C)_av.= 1.532 Å. Cyclohexane ring: average bond angle 110.4° ; average torsional angle 57°. Cyclobutane ring: average bond angle 87.3°; puckering 145°. The “connection angle” is 180° (C₂ symmetry).Comparison is made with structures of related compounds.     

Electrophilic glycosidation employing 3,5-O-(di-tert-butylsilylene)-erythro-furanoid glycal leads to exclusive formation of the β-anomer: synthesis of 2′-deoxynucleosides and its 1′-branched analogues

Stereoselectivity in N-iodosuccimide (NIS)-mediated electrophilic glycosidation was examined by employing 2,4-bis-O-(trimethylsilyl)thymine and three different silyl-protected erythro-furanoid glycals 12, 16, and 18. As a result, it was found that 3,5-O-(di-t-butylsilylene)-protected 18 gave only the β-anomer (21). The remarkable stereoselectivity observed by employing 18 is discussed on the basis of its X-ray crystallographic analysis. 1-Substituted glycals gave the corresponding β-anomer, again exclusively, to provide access to 1′-branched 2′-deoxynucleosides.     

2' And 3'-ketonucleosides and their arabino and xylo reduction products: Convenient access via selective protection and oxidation of ribonucleosides

A number of 2',5'- or 3',5'-diprotected ribonucleosides and 5'-protected 2'- or 3'-deoxy-β-D-erythro-pentofuranosyl nucleosides have been oxidized to the corresponding 3' or 2'-ketonucleoside derivatives using chromium trioxide/pyridine/acetic anhydride or dimethyl sulfoxide/ acetic anhydride. Reduction of the carbonyl functions with sodium borohydride gave the inverted arabino, xylo, or deoxy-threo isomers as predominant products by attack at the less hindered α-face of the sugar ring. Parallel reductions using sodium borodeuteride corroborated the epimeric ratios by demonstrating that complete oxidation of the original hydroxyl groups had occurred. The deuterium labeling also aided in making NMR spectral assignments.