IR and NMR spectra, intramolecular hydrogen bonding and conformations of mercaptothiacalix[4]arene molecules and their para-tert-butyl-derivative

It is demonstrated that the introduction of p-tert-butyl groups dramatically influences the conformational behaviour of the mercaptothiacalix[4]arene molecules. Quantum-chemical computations in combination with IR and NMR spectroscopy prove that, in contrast to closely related calixarenes, the 1,3-alternate becomes a dominant conformer of p-tert-butyl-mercaptothiacalix[4]arene not only in crystal, but also in solutions and in vacuum. It is shown that the title molecules form essentially non-cooperative intramolecular hydrogen bonds: their SH groups are intramolecularly H-bonded solely to the sulfide groups bridging thiophenolic units. The enthalpy of this bonding, evaluated from Iogansen’s rule, amounts to ca. 1.5 kcal mol⁻¹ per one SH···S bond, which about four times smaller than the enthalpies of cooperative intramolecular H-bonds formed by related calixarenes and thiacalixarenes. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Vibrational spectra, co-operative intramolecular hydrogen bonding and conformations of calix[4]arene and thiacalix[4]arene molecules and their para-tert-butyl derivatives

The IR and Raman spectra and conformations of calix[4]arene, thiacalix[4]arene and their p-tert-butyl derivatives have been analysed within the framework of scaled quantum mechanics (SQM). It is shown that the introduction of four p-tert-Bu groups into the calixarene molecules influences the relative energies of their conformers and the enthalpy of the cooperative intramolecular H-bonding (DeltaH(intra)) almost negligibly. DeltaH(intra), evaluated from Iogansen's rule, amounts to approximately 26-28 kcal mol(-1) for the calixarenes and approximately 20-21 kcal mol(-1) for the thiacalixarenes, which essentially exceeds the enthalpies of non-cooperative H-bonds formed by related phenols. As a result of this strong bonding, bands of stretching, bending and torsion vibrations of an eight-membered cyclic system (OH...)4 arise, e.g., two delta(OH)4 bands are observed in the IR spectra of the most highly symmetric C4 cone conformations of calix[4]arene and thiacalix[4]arene. The "duplication" of the number of OH infrared bands is a good new indicator of cooperativity of intramolecular H-bonding of the calixarenes.     

Band intensity in the IR spectra and conformations of calix[4]arene and thiacalix[4]arene

The experimental IR and Far IR spectra of the calix[4]arene, p-tert-butylcalix[4]arene, thialcalix[4]arene and p-tert-butylthiacalix[4]arene were examined at different temperatures and interpreted. The band frequencies and intensities in the IR spectra of the calix[4]arene and thialcalix[4]arene were calculated. The absorption curves of the four possible calix[4]arene conformations: cone, partial cone, 1,2- and 1,3-alternate were computed. The bands characteristic for each conformation are defined and assigned. The obtained spectra-structure correlation can be used for the characteristic of calixarenes conformation.     

Cooperative intramolecular hydrogen bond and conformations of thiocalix[4]arene molecules

The joint FTIR spectroscopic study and ab initio quantum-chemical calculations (HF/3-21G and PBE/TZ2P methods) showed that thiocalix[4] arene molecules adopt the cone conformation in CCl₄ solutions. The weakening of the cooperative intramolecular H bond in thiocalix[4]arenes compared to the corresponding calix[4]arenes can be due to the larger thiocalixarene macrocycle, bifurcated hydrogen bond in it, and electron density transfer from the bridging S atom to the benzene ring.     

The hydrogen bonding and conformations of p-tert-butylcalix[4]arene as studied by IR spectroscopy and by DFT calculations

IR and far IR spectra of p-tert-butylcalix[4]arene were recorded at various temperatures between 16 and 180 degrees C and spectra of solutions and crystalline solids were obtained. Ab initio density functional calculations gave vibrational frequencies and infrared intensities for four conformers: cone, partial cone, 1,2- and 1,3-alternate. Complete assignments were made for experimental IR spectra of the cone conformer. The bands characteristic for each conformation were defined. It was revealed that O--H stretching low-frequency shift Deltanu in the cone conformation exceeds Deltanu shifts for other conformers. The effect was stipulated by a cooperative interaction of cyclic hydrogen bonds. The obtained spectra-structure correlation can be used for characteristic of calixarenes conformation.     

Modelling conformations and IR spectra of p-tert-butylthiacalix[4]arene tetraester using DFT method

The infrared spectra of the cone, partial cone and 1,3-alternate conformers of p-tert-butyltetrakis(ethoxycarbonyl)methoxytetrathiacalix[4]arene (TEMT) have been recorded. The structural optimization and normal mode analysis were performed for this molecule on the basis of the density functional theory. These calculations gave the frequencies of vibrations and infrared intensities for the cone, partial cone (paco) and 1,3-alternate (1,3-alt) conformers. The energy difference between the paco and 1,3-alt conformers is 3.1 kcal/mol. The cone conformer is likely to be less stable compared to the paco and 1,3-alt conformers. The calculated in gas phase dipole moments 5.65, 3.33, and 0.02 D for the cone, paco and 1,3-alt conformers of the TEMT are in good accordance with theoretical values for the thiacalix[4]arene. Complete assignments were made for the experimental IR spectra of all conformers. The softness of sulphur atoms to nucleophilic and electrophilic attack is higher than softness of oxygen atoms of ester groups in the lower rim. The bands characteristic for each conformation were defined. IR spectroscopy combined with DFT computation provides unique detailed information about the structure of the technologically relevant materials, which could not be obtained before with any other technique.     

Hydrogen bonding patterns of calix[4]arenes with thiourea functionalities in solution and in the solid state

[structure: see text] We have synthesized a number of calix[4]arene derivatives presenting thiourea functional groups at their upper rims by the condensation of a 1,3-di(p-amino)calix[4]arene with alkyl isothiocyanates. Mono- and dithiourea-substituted calix[4]arenes were prepared selectively in good yields, and homocoupling of the former led to calix[4]arene dimers with a thiourea linker. X-ray crystallography revealed interesting intra- and intermolecular hydrogen bonding patterns. (1)H NMR data and computational studies also provided some insight into the hydrogen bonding patterns.     

Hydrogen bonding of N-methylacetamide in CDCl3 solution studied by NMR and IR spectra

The amide proton NMR chemical shifts have been widely used for the determination of the population fraction of the non-hydrogen-bonded states in studies of hydrogen bonding in peptides and proteins. However, in such works the determination of the limiting chemical shifts for the fully hydrogen-bonded state and for the non-hydrogen-bonded state is quite problematic, because they cannot be measured directly. In the present study, we carried out variable-temperature ¹H NMR and IR measurements for N-methylacetamide in CDCl₃ solution. We derived the expression for the limiting chemical shift for the fully hydrogen-bonded state as a function of IR band intensity and chemical shift. According to the equation, we determined the values of the limiting shifts at various temperatures. The present method may be applicable to other hydrogen-bonding systems.     

Self-recognition, structure, stability, and guest affinity of pyrogallol[4]arene and resorcin[4]arene capsules in solution

In the present study, we used diffusion NMR to probe the structures and characteristics of the products obtained from the self-assembly of resorcin[4]arenes 1a and 1b and pyrogallol[4]arenes 2a and 2b in CDCl(3) solutions. It was found that all four molecules self-assemble into hexameric capsules. The hexameric capsules of pyrogallol[4]arenes 2a and 2b were found to be more stable than the capsules of resorcin[4]arenes 1a and 1b in polar media. We also studied the role of water molecules in the self-assembly of the different capsules and found that water molecules are part of the hexameric capsules of resorcin[4]arenes 1a and 1b but not in the capsules of pyrogallol[4]arenes 2a and 2b. It was found that the self-assembly process between the resorcin[4]arenes and pyrogallol[4]arenes proceeds with self-recognition. When mixing two macrocycles of different types in a chloroform solution, no heterohexamers are formed, only the capsule constructed from the same macrocycle is detected. However, when two resorcin[4]arenes (i.e., 1a and 1b) or two pyrogallol[4]arenes (i.e., 2a and 2b) are mixed, heterohexamers are formed over time. In addition, we found that resorcin[4]arenes and pyrogallol[4]arenes differ significantly in their guest affinity. The capsules of 1a and 1b can accommodate both the tertiary alkylamines and their respective ammonium salts, while the capsules of 2a and 2b encapsulate only the neutral tertiary alkylamines.     

Syntheses and conformations of tetrahomodioxacalix[4]arene tetraamides and tetrathioamides

A series of tetrahomodioxacalix[4]arene tetraamides and tetrathioamides with four p-phenyl groups on their upper rim were synthesized. From the (1)H and (13)C NMR and crystal structure, N-butylamido homooxacalix[4]arene (4) was found to be in the 1,3-alternate conformation and has intramolecular hydrogen bonding between N-H and facing oxygen atoms of the carbonyl O=C group. This hydrogen bonding decreased the metal ion complex ability. Transformation of the 1,3-alternate N-butylamido (4) into N-butylthioamido homooxacalix[4]arene (5) using Lawesson's reagent gave a conformational change to the C-1,2-alternate.     

A new packing motif for para-sulfonatocalix[4]arene: the solid state structure of the para-sulfonatocalix[4]arene D-arginine complex

The solid-state structure of the complex of para-sulfonatocalix[4]arene with d-arginine, contains a water channel diagonal to a zigzag bilayer of the host, within the bilayer six crystallographically independent molecules of arginine are present, four being included in the calix cavities.     

DFT and IR spectroscopic analysis of p-tert-butylthiacalix[4]arene

Vibrational analysis of p-tert-butylthiacalix[4]arene based on an experimental mid and far IR spectra is described here. Density functional calculations of a most stable cone conformer related to crystalline solid FT-IR spectra in the temperature range up to 180 degrees C as well spectra of dilute solution have been used to obtain a better understanding of conformational state and a hydrogen bonding of p-tert-butylthiacalix[4]arene. Complete assignments were made for experimental FT-IR spectra of the cone conformer. Heating (up to 180 degrees C) of crystalline p-tert-butylthiacalix[4]arene did not change both conformational and cooperative H-bonding state of its molecules. A temperature spectral effect seems to be due to some relaxation of crystal packing mostly viewed on the OH bands.     

Guest-induced conformation shift of p-sulphonatothiacalix[4]arene in the solid state and solution manipulated by [Zn(dipy)3]2+

The ¹H NMR and X-ray analysis data reveal the guest-induced cone → partial cone and cone → 1,2-alternate conformational shift in aqueous methanol solutions and solid state for a p-sulphonatothiacalix[4]arene-[Zn(dipy)₃]²⁺ host–guest system. The experimental data, together with DFT calculations, show that the guest-induced conformational shift of p-sulphonatothiacalix[4]arene is facilitated by the deprotonation of phenolic groups.     

Intramolecular hydrogen bonding effect on metal ion complexation of homooxacalix[4]arene bearing tetraamides

N,N-Dipentylamido homooxacalix[4]arene (3) in the C-1,2-alternate conformation provided Pb²⁺ ion selectivity over other metal cations. N-Monopentylamido homooxacalix[4]arene in C-1,2-alternate conformation has an intramolecular hydrogen bonding, causing decrease of the metal ion complex ability.     

Two structural types of 1,3-alternate tetrapropoxycalix[4]arene derivatives in the solid state

The solid state structures of seven tetrapropoxycalix[4]arene derivatives immobilised in a 1,3-alternate conformation were determined using single-crystal X-ray crystallography. The cavity shapes of investigated derivatives (upper rim unsubstituted, distally di-substituted and tetra-substituted) and the nature of intermolecular interactions in molecular packing were compared. The results indicate that there are only two structural types adopted by basic tetrapropoxycalix[4]arene derivatives in the 1,3-alternate conformation.     

Recognition of guests bearing donor and acceptor hydrogen bonding groups by heteroditopic calix[4]arene receptors

The synthesis of new hosts specifically designed for the recognition of neutral guests bearing donor-acceptor hydrogen bonding groups is described. These hosts are characterized by the presence of two distinct binding region in close proximity: the rigid π-donor cavity and the H-bond donor N-methylene-N′-phenylureido group inserted onto the upper rim of the calix[4]arene skeleton. The binding abilities of these receptors were investigated toward a series of neutral ditopic organic molecules in CDCl₃ solution by ¹H NMR spectroscopy. The results obtained show that rigidity of the calix[4]arene apolar cavity is the control element in determining efficiency. In fact, compared with the more rigid 2, host 10, where the rigidity of the cone structure is maintained by hydrogen bonding of the OH of the lower rim, a decrease of efficiency of almost one order of magnitude was observed. The cooperative effect of the two binding region of host 2 was verified with different classes of ditopic guests. Good efficiency in the recognition of urea derivatives and dimethylsulfoxide was achieved.     

Synthesis and conformational property of tannin-like p-tert-butylcalix[4]arene 1,3-diesters stabilized by intramolecular hydrogen bonds.

Tannin-like p-tert-butylcalix[4]arene 1,3-digallate was synthesized, and its conformational property was investigated by dynamic (1)H NMR and X-ray crystallography. It was found that the 3-OH (or 5-OH) group of the galloyl group in p-tert-butylcalix[4]arene 1,3-digallate is placed at the position where an unusual nonbonded close contact is observed between the OH group and the aromatic ring of the galloyl group facing each other. The calixarene 1,3-diesters of various hydroxybenzoic acids were also prepared, and the conformational properties of those calixarenes were compared with that of p-tert-butylcalix[4]arene 1,3-digallate. A significant contribution of the 3- and 5-OH groups in pendant groups toward the close contact was found. It was suggested that the conformation of p-tert-butylcalix[4]arene 1,3-digallate was stabilized by intramolecular hydrogen bonds including OH.O and OH-pi interactions.     

Guest exchange in dimeric capsules of a tetraurea calix[4]arene in the solid state

A solid powder of hydrogen bonded dimers of a tetraurea calix[4]arene is able to exchange the encapsulated guest in contact with the vapor of a second guest. The molecules of a guest-free powder obtained from a polar solvent cannot rearrange in the solid phase to form new guest-filled capsules under these conditions.     

Cooperative effect in hydrogen bonding of N-methylacetamide in carbon tetrachloride solution confirmed by NMR and IR spectroscopies

Recently we carried out ab initio molecular orbital calculations of the hydrogen bond energies in the dimers and trimers of N-methylacetamide (NMA), and found the existence of a cooperative effect in the hydrogen bonding, by which formation of one hydrogen bond in a hydrogen-bonded chain enhances the strength of another hydrogen bond. In order to confirm the existence of such a cooperative effect, we have determined experimentally the enthalpy changes occurring upon hydrogen bonding of NMA in CCl4 solution. First, following the method proposed by us, the population fractions of free (non-bonded) NH protons are obtained from the observed amide proton NMR chemical shifts and the IR intensities of the free NH stretching bands. Next, the enthalpy changes are evaluated by analyzing the equilibrium between the free and bonded states of an NH proton. In this analysis, the existence of the CCl4 solvent is taken into account. The stabilization energy of hydrogen bonds in a trimer, as compared with twice the hydrogen bond energy in a dimer, is 5.4 kJ mol(-1), in good agreement with the calculated value (5.9 kJ mol(-1)). This result provides experimental confirmation of the existence of a cooperative effect in hydrogen bonding.     

Thiourea-linked upper rim calix[4]arene neoglycoconjugates: synthesis,conformations and binding properties

The thiourea group has been exploited to link two or four carbohydrate units at the upper rim of tetrapropoxycalix[4]arene derivatives in the cone conformation. Two synthetic methodologies were used, the first one consisting of the condensation of di- and tetraminocalix[4]arenes with the isothiocyanate of monosaccharides in dry CH2Cl2 at room temperature and the second one exploiting the condensation of an aminolactoside with a calixarene isothiocyanate. The first method allows the glycoconjugates to be obtained in 75-80% overall yields. The disfunctionalized derivatives exist in a closed flattened cone conformation in CDCl3 and CD3OD due to the formation of intramolecular hydrogen bonds involving the thiourea groups which are broken in DMSO-d6 to give an open flattened cone conformation. The thiourea groups act not only as linkers but also as binding units for anionic substrates as evidenced by solution 1H NMR and ESI-MS experiments. Turbidimetric analysis indicates that the tetraglucoside and tetragalactoside clusters give specific interactions with Concanavalin A (Con A) and peanut lectin (PNA), respectively. Both features show that the neoglycoconjugates could also be used as site specific molecular delivery systems.