Multitasking Water‐Soluble Synthetic G‐Quartets: From Preferential RNA–Quadruplex Interaction to Biocatalytic Activity

Natural G‐quartets, a cyclic and coplanar array of four guanine residues held together through a Watson–Crick/Hoogsteen hydrogen‐bond network, have received recently much attention due to their involvement in G‐quadruplex DNA, an alternative higher‐order DNA structure strongly suspected to play important roles in key cellular events. Besides this, synthetic G‐quartets (SQ), which artificially mimic native G‐quartets, have also been widely studied for their involvement in nanotechnological applications (i.e., nanowires, artificial ion channels, etc.). In contrast, intramolecular synthetic G‐quartets (iSQ), also named template‐assembled synthetic G‐quartets (TASQ), have been more sparingly investigated, despite a technological potential just as interesting. Herein, we report on a particular iSQ named ^PNADOTASQ, which demonstrates very interesting properties in terms of DNA and RNA interaction (notably its selective recognition of quadruplexes according to a bioinspired process) and catalytic activities, through its ability to perform peroxidase‐like hemin‐mediated oxidations either in an autonomous fashion (i.e., as pre‐catalyst for TASQzyme reactions) or in conjunction with quadruplex DNA (i.e., as enhancing agents for DNAzyme processes). These results provide a solid scientific basis for TASQ to be used as multitasking tools for bionanotechnological applications.     

Solventless Formation of G‐Quartet Complexes Based on Alkali and Alkaline Earth Salts on Au(111)

Template cations have been extensively employed in the formation, stabilization and regulation of structural polymorphism of G‐quadruplex structures in vitro. However, the direct addition of salts onto solid surfaces, especially under ultra‐high‐vacuum (UHV) conditions, to explore the feasibility and universality of the formation of G‐quartet complexes in a solventless environment has not been reported. By combining UHV‐STM imaging and DFT calculations, we have shown that three different G‐quartet‐M (M: Na/K/Ca) complexes can be obtained on Au(111) using alkali and alkaline earth salts as reactants. We have also identified the driving forces (intra‐quartet hydrogen bonding and electrostatic ionic bonding) for the formation of these complexes and quantified the interactions involved. Our results demonstrate a novel route to fabricate G‐quartet‐related complexes on solid surfaces, providing an alternative feasible way to bring metal elements to surfaces for constructing metal–organic systems.     

Effect of External Electric Field on H‐Bonding and π‐Stacking Interactions in Guanine Aggregates

The structure and electronic properties of guanine oligomers and π stacks of guanine quartets (G‐quartets) with circulene are investigated under an external field through first‐principles calculations. An electric field induces nonplanarity in the guanine aggregates and also leads to an increase in the H‐bond distances. The calculations reveal that the binding energy of the circulenes with G‐quartets increases on application of an electric field along the stacking direction. The HOMO–LUMO gap decreases substantially under the influence of an external field. The contribution of a simple dipole–dipole interaction to the stability of the stacked system is also analyzed. The electric field along the perpendicular axis increases the dipole moments of the guanine dimer, trimer, and quartet. Such an increase in the dipole moment facilitates stacking with circulenes. The stability of G‐quartet–circulene π stacks depends on the phase of the dipole moment (in‐phase or out‐of‐phase) induced by an external electric field. The stability of stacks of bowl‐shaped circulenes with G‐quartets depends on the direction of the applied field.     

Porphyrin-templated synthetic G-quartet (PorphySQ): a second prototype of G-quartet-based G-quadruplex ligand

Template-assembled synthetic G-quartet (TASQ) has been reported recently as a G-quadruplex ligand interacting with DNA according to an unprecedented, nature-inspired 'like likes like' approach, based on the association between two G-quartets, one being native (quadruplex) and the other one artificial (ligand). Herein, a novel TASQ-based ligand is designed, synthesized and its quadruplex-recognition properties are evaluated in vitro: PorphySQ (for porphyrin-templated synthetic G-quartet) displays enhanced quadruplex recognition properties as compared to the very first reported prototype (DOTASQ, for DOTA-templated synthetic G-quartet), since the porphyrin template insures a more stable intramolecular G-quartet fold due to self-stabilizing interactions that may take place intramolecularly between the porphyrin ring and the formed G-quartet.     

The Kinetic Isotope Effect as a Probe of Spin Crossover in the C?H Activation of Methane by the FeO+ Cation

Two‐state reactivity (TSR) is often used to explain the reaction of transition‐metal–oxo reagents in the bare form or in the complex form. The evidence of the TSR model typically comes from quantum‐mechanical calculations for energy profiles with a spin crossover in the rate‐limiting step. To prove the TSR concept, kinetic profiles for C H activation by the FeO⁺ cation were explored. A direct dynamics approach was used to generate potential energy surfaces of the sextet and quartet H‐transfers and rate constants and kinetic isotope effects (KIEs) were calculated using variational transition‐state theory including multidimensional tunneling. The minimum energy crossing point with very large spin–orbit coupling matrix element was very close to the intrinsic reaction paths of both sextet and quartet H‐transfers. Excellent agreement with experiments were obtained when the sextet reactant and quartet transition state were used with a spin crossover, which strongly support the TSR model.     

The Kinetic Isotope Effect as a Probe of Spin Crossover in the CH Activation of Methane by the FeO+ Cation

Two‐state reactivity (TSR) is often used to explain the reaction of transition‐metal–oxo reagents in the bare form or in the complex form. The evidence of the TSR model typically comes from quantum‐mechanical calculations for energy profiles with a spin crossover in the rate‐limiting step. To prove the TSR concept, kinetic profiles for C? H activation by the FeO⁺ cation were explored. A direct dynamics approach was used to generate potential energy surfaces of the sextet and quartet H‐transfers and rate constants and kinetic isotope effects (KIEs) were calculated using variational transition‐state theory including multidimensional tunneling. The minimum energy crossing point with very large spin–orbit coupling matrix element was very close to the intrinsic reaction paths of both sextet and quartet H‐transfers. Excellent agreement with experiments were obtained when the sextet reactant and quartet transition state were used with a spin crossover, which strongly support the TSR model.     

Electronic properties of the low‐lying spin states of dimethylnitrosamine coordinated to Fe(III) heme models: An ab initio study

The unusual O‐coordination mode of nitrosamines to Fe(III) heme models has been observed in the bis(dimethylnitrosamine)(meso‐tetraphenylporphyrinate)iron(III) cation. For the first time, this latter as well as the simpler bis(dimethylnitrosamine)(porphinate)iron(III) heme model cations have been studied through ab initio methods. The sextet, quartet, and doublet spin states of both cations have been studied through single‐point calculations based on the experimental (X‐ray) geometry. Their energies, charges, and spin densities have been analyzed. The obtained results (at the UHF/cc‐pVDZ and ROHF/cc‐pVDZ levels) indicate that the peripheral benzene rings are of secondary importance for the coordination of dimethylnitrosamine to the Fe(III) porphyrin core. The obtained energy ordering is sextet < quartet < doublet, at all computational levels. The UHF, ROHF, and UMP2 results indicate an excess of alpha spin density around the Fe atom, a low covalency for the Fe? O bond and a substantial charge transfer to the Fe atom. Our best estimates [obtained at ROMP2 level with the mixed cc‐pVDZ/cc‐pVTZ‐DK(Fe) basis set] for the energy differences (in eV) between the three spin states considered are 0.929 for the sextet‐quartet gap and 0.812 for the quartet‐doublet gap, which indicate that the spin crossover (at room temperature) is very unlikely. These results represent the substantial decrease in the uncorrelated values. The implications of spin contaminations at the UHF and UMP2 levels for subsequent geometry optimizations to be performed in the smaller cation have also been discussed. © 2013 Wiley Periodicals, Inc.     

Cyclic Triradicals Composed of Iminonitroxide–Gold(I) with Intramolecular Ferromagnetic Interactions

A triangular gold(iminonitroxide‐2‐ide) trimer complex ( 5 ) was prepared and investigated to determine its magnetic properties. The results showed that the metalloid triradical is highly stable, even in solution under aerated conditions. The intramolecular exchange interaction of 5 was found to be positive (J_intra/k_B≈+29 K), thus showing that 5 is in a quartet ground state. In addition, a silver sandwich complex ( 5 ‐Ag⁺‐ 5 ) was prepared and its electronic and magnetic properties were also clarified.     

Electron affinities,gas phase acidities,and potential energy curves: Benzene

The experimental electron affinities of benzene, E_a(Bz), 0.4 to ?4.8 eV, are evaluated. Multiple negative ion states are proposed to account for different electron affinities. The semi‐empirical procedure known as “configuration interaction or unrestricted orbitals to relate experimental quantities to self‐consistent field values by estimating electron correlation” (CURES‐EC) has several advantages: (i) supports multiple E_a(Bz), (ii) supports the E_a(phenyl) and the D(C? H,Bz), (iii) supports the gas phase acidity of benzene from the latter, (iv) predicts the singlet–triplet split for the phenyl anion of 1.2(2) eV, and (v) predicts the existence of an excited quartet state of the benzene anion with an E_a(Bz), ?2.5(2) eV. Nine ionic Morse curves are calculated from CURES‐EC properties and experimental data. These are compared with quantum mechanical crossing “c” potentials obtained using a subroutine in commercial software and ab initio and density functional theory (DFT) procedures. Curves are calculated for the proposed quartet state of the benzene anion. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

3,4,5,6‐Tetrafluorophenylnitren‐2‐yl: A Ground‐State Quartet Triradical

The photochemistry of 2‐iodo‐3,4,5,6‐tetrafluorophenyl azide ( 7 d ) has been investigated in argon and neon matrices at 4 K, and the products characterized by IR and EPR spectroscopy. The primary photochemical step is loss of a nitrogen molecule and formation of phenyl nitrene 1 d . Further irradiation with UV or visible light results in mixtures of 1 d with azirine 5 d ′, ketenimine 6 d ′, nitreno radical 2 d , and azirinyl radical 9 . The relative amounts of these products strongly depend on the matrix and on the irradiation conditions. Nitreno radical 2 d with a quartet ground state was characterized by EPR spectroscopy. Electronic structure calculations in combination with the experimental results allow for a detailed understanding of the properties of this unusual new type of organic high‐spin molecules.     

A Benzene‐1,3,5‐Triaminyl Radical Fused with ZnII‐Porphyrins: Remarkable Stability and a High‐Spin Quartet Ground State

A benzene‐1,3,5‐triaminyl radical fused with three Zn^II‐porphyrins was synthesized through a three‐fold oxidative fusion reaction of 1,3,5‐tris(Zn^II‐porphyrinylamino)benzene followed by oxidation with PbO₂ as key steps. This triaminyl radical has been shown to possess a quartet ground state with a doublet–quartet energy gap of 3.1 kJ mol^?1 by superconducting quantum interference device (SQUID) studies. Despite its high‐spin nature, this triradical is remarkably stable, which allows its separation and recrystallization under ambient conditions. Moreover, this triradical can be stored as a solid for more than one year without serious deterioration. The high stability of the triradical is attributed to effective spin delocalization over the porphyrin segments and steric protection at the nitrogen centers and the porphyrin meso positions.     

G‐Tetraplex‐Induced FRET within Telomeric Repeat Sequences Using PyA‐PerA as Energy Donor–Acceptor Pair

G‐tetraplex induced fluorescence resonance energy transfer (FRET) within telomeric repeat sequences has been studied using a nucleoside‐tethered FRET pair embedded in the human telomeric G‐quadruplex forming sequence (5′‐A GGG TT ^Py A GGG TT ^Per A GGG TTA GGG‐3′, Py=pyrene, Per=perylene). Conformational change from a single strand to an anti‐parallel G‐quadruplex leads to FRET from energy donor ( ^Py A ) to acceptor ( ^Per A ). The distance between the FRET donor/acceptor partners was controlled by changing the number of G‐quartet spacer units. The FRET efficiency decreases with increase in G‐quartet units. Overall findings indicate that this could be further used for the development of FRET‐based sensing and measurement techniques.     

Drawing with Iron on a Gel Containing a Supramolecular Siderophore

Guanosine‐5′‐hydroxamic acid ( 3 ) forms hydrogels when mixed with guanosine ( 1 ) and KCl. The 5′‐hydroxamic acid (HA) unit is pH‐responsive and also chelates Fe³⁺. When gels are prepared under basic conditions, the 5′‐HA groups are deprotonated and the anionic hydrogel binds cationic thiazole orange (TO), signaled by enhanced fluorescence. The HA nucleoside 3 , when immobilized in the G‐quartet gel, acts as a supramolecular siderophore to form red complexes with Fe³⁺. We patterned the hydrogel's surface with FeCl₃, by hand and by using a 3D printer. Patterns form instantly, are visible by eye, and can be erased using vitamin C. This hydrogel, combining self‐assembled G‐quartet and siderophore–Fe³⁺ motifs, is strong, can be molded into different shapes, and is stable on the bench or under salt water.     

Formation and Characterization of a BeOBeC Multiple Radical Featuring a Quartet Carbyne Moiety

Through reaction of beryllium dimers with carbon monoxide, a carbonyl complex BeBeCO is formed in solid neon. Upon visible light excitation, the BeBeCO complex rearranges to a BeCOBe isomer, which further isomerizes to a low‐energy BeOBeC species under UV‐visible light excitation. These species are identified on the basis of infrared absorption spectroscopy with isotopic substitutions and quantum chemical studies. The BeOBeC molecule is characterized to be a multiple radical species having an electronic quintet ground state featuring an unusual quartet carbyne unit with three unpaired electrons on the carbon center. Bonding analysis indicates that the strong Pauli repulsion between carbon 2s lone pair electrons and the σ electrons of the BeOBe fragment significantly weakens the Be?C bonding and destabilizes the triplet state of the BeOBeC radical with a doublet carbyne unit. The three‐center π‐bonding of BeOBe is also found to play a role in stabilizing the quartet carbyne.     

The bonding character of AlSO isomers in quartet excited states: Ab initio and density functional theory studies

The geometries and the bonding properties have been predicted for four isomers of AlSO species in the quartet state at density functional theory and coupled cluster [CCSD(T)] all‐electron correlation levels with a large 6‐311+G(3df) basis set. Results have indicated that for the AlSO species in quartet state the lowest state is ⁴A″ state which corresponds to a cyclic structure; the other three isomers (cyclic, bent, and linear) are higher than the lowest state by 26.9 kcal/mol (cyclic ⁴A′), 19.4 kcal/mol (⁴A″), and 28.3 kcal/mol (linear AlSO ⁴Σ), respectively. The calculated dissociation energies for the lowest quartet state species (AlSO: ⁴A″) are 27.3 kcal/mol for the radical mechanism [M(²P)+SO(³Σ^?)] and 154.7 kcal/mol for the mechanism [M(²P)+S(³P)+O(³P)]. Inspection of the bonding character indicates that the cyclic AlSO species in the lowest quartet state (⁴A″) should be classified as thiodioxide (similar to disulfide or dioxide), and the cyclic ⁴A′ state should be classified as thiosuperoxide. The bent Al? SO(⁴A″) species has some thiosuperoxide character, while the linear Al? SO(⁴Σ) structure should be classified as a molecular complex with a weak interaction bonding. However, this thiosuperoxide is not as ionic as LiO₂ and LiSO and is also less ionic than the cyclic AlO₂. In addition, the combinations of Al with SO species exhibit the amphoteric character of Al. © 2002 John Wiley & Sons, Inc. Int J Quantum Chem, 2002     

Accurate discrimination of Gastrodia elata from different geographical origins using high‐performance liquid chromatography fingerprint combined with boosting partial least‐squares discriminant analysis

Gastrodia elata from different geographical origins varies in quality and pharmacological activity. This study focused on the classification and identification of Gastrodia elata from six producing areas using high‐performance liquid chromatography fingerprint combined with boosting partial least‐squares discriminant analysis. Before recognition analysis, a principal component analysis was applied to ascertain the discrimination possibility with high‐performance liquid chromatography fingerprints. And then, boosting partial least‐squares discriminant analysis and conventional partial least‐squares discriminant analysis were applied in this study. Experimental results indicated that the adaptive iteratively reweighted penalized least‐squares algorithm could eliminate the baseline drift of high‐performance liquid chromatography chromatograms effectively. And compared with partial least‐squares discriminant analysis, the total recognition rates using high‐performance liquid chromatography fingerprint combined with boosting partial least‐squares discriminant analysis for the calibration sets and prediction sets were improved from 94 to 100% and 86 to 97%, respectively. In conclusion, high‐performance liquid chromatography combined with boosting partial least‐squares discriminant analysis, which has such advantages as effective, specific, accurate, non‐polluting, has an edge for discrimination of traditional Chinese medicine from different geographical origins. And the proposed methodology is a useful tool to classify and identify Gastrodia elata from different geographical origins.     

Developing a Self‐Healing Supramolecular Nucleoside Hydrogel Based on Guanosine and Isoguanosine

Recently, supramolecular hydrogels have attracted increasing interest owing to their tunable stability and inherent biocompatibility. However, only few studies have been reported in the literature on self‐healing supramolecular nucleoside hydrogels, compared to self‐healing polymer hydrogels. In this work, we successfully developed a self‐healing supramolecular nucleoside hydrogel obtained by simply mixing equimolar amounts of guanosine (G) and isoguanosine (isoG) in the presence of K⁺. The gelation properties have been studied systematically by comparing different alkali metal ions as well as mixtures with different ratios of G and isoG. To this end, rheological and phase diagram experiments demonstrated that the co‐gel not only possessed good self‐healing properties and short recovery time (only 20 seconds) but also could be formed at very low concentrations of K⁺. Furthermore, nuclear magnetic resonance (NMR), powder X‐ray diffraction (PXRD), and circular dichroism (CD) spectroscopy suggested that possible G₂isoG₂‐quartet structures occurred in this self‐healing supramolecular nucleoside hydrogel. This co‐gel, to some extent, addressed the problem of isoguanosine gels for the applications in vivo, which showed the potential to be a new type of drug delivery system for biomedical applications in the future.     

Theoretical studies of the electronic spectrum of SiC

Ab initio based multireference singles and doubles configuration interaction calculations have been carried out to study the electronic structure and spectroscopic properties of the SiC⁺ ion. Potential energy curves and spectroscopic constants (r_e, T_e, ω_e) of 14 low-lying doublet and quartet states of the ion are studied. The spin-orbit coupling has been included to see its effects on the spectroscopic properties. Transition probabilities of some quartet–quartet transitions are computed, while the spin-forbidden transitions are very weak. Dipole moments of all low-lying states are estimated by keeping the origin at the center of mass. The vertical and adiabatic ionization energies of SiC are also reported.     

Boosting partial least‐squares discriminant analysis with application to near infrared spectroscopic tea variety discrimination

In the present study, boosting has been combined with partial least‐squares discriminant analysis (PLS‐DA) to develop a new pattern recognition method called boosting partial least‐squares discriminant analysis (BPLS‐DA). BPLS‐DA is implemented by firstly constructing a series of PLS‐DA models on the various weighted versions of the original calibration set and then combining the predictions from the constructed PLS‐DA models to obtain the integrative results by weighted majority vote. Coupled with near infrared (NIR) spectroscopy, BPLS‐DA has been applied to discriminate different kinds of tea varieties. As comparisons to BPLS‐DA, the conventional principal component analysis, linear discriminant analysis (LDA), and PLS‐DA have also been investigated. Experimental results have shown that the inter‐variety difference can be accurately and rapidly distinguished via NIR spectroscopy coupled with BPLS‐DA. Moreover, the introduction of boosting drastically enhances the performance of an individual PLS‐DA, and BPLS‐DA is a well‐performed pattern recognition technique superior to LDA. Copyright © 2012 John Wiley & Sons, Ltd.     

Earth‐Abundant Nanomaterials for Oxygen Reduction

Replacing the rare and precious platinum (Pt) electrocatalysts with earth‐abundant materials for promoting the oxygen reduction reaction (ORR) at the cathode of fuel cells is of great interest in developing high‐performance sustainable energy devices. However, the challenging issues associated with non‐Pt materials are still their low intrinsic catalytic activity, limited active sites, and the poor mass transport properties. Recent advances in material sciences and nanotechnology enable rational design of new earth‐abundant materials with optimized composition and fine nanostructure, providing new opportunities for enhancing ORR performance at the molecular level. This Review highlights recent breakthroughs in engineering nanocatalysts based on the earth‐abundant materials for boosting ORR.