Inductive effect for the phase stability in hydrogen bonded liquid crystals,x-(p/m)BA:9OBAs

A new series of hydrogen bonded liquid crystal (HBLC) complexes, made up with substituted benzoic acids (BAs) and nonyloxy benzoic acid, viz., x-(p/m)BA:9OBAs are reported for x = F, Cl, Br and –CH₃ substituted at para (p) or meta (m) positions of BA moiety. Proton nuclear magnetic resonance (¹H-NMR) spectrum confirms the HBLC complex. Infra red (IR) spectrum confirms linear, double and complementary type of hydrogen bonding (HB) between x-(p/m)BAs and 9OBA. The liquid crystal (LC) phases are characterised by polarisation optical microscopy (POM) and differential scanning calorimetry (DSC) techniques. x-(p/m)BA:9OBA exhibit N, C and G LC phase variance. HB induces tilted phases and enhances LC phase stability. The influence of configuration, size, electronegativity, electron directing capacity and inductive nature of substituent (x) is investigated for the stability of LC phases. An overview of the LC phase data indicates predominant ‘negative inductive effect’ in HBLCs with electron withdrawing substituents. Inductive effect operates effectively for para substitutions. Results are discussed in the wake of reports in other HBLCs.     

Self-assembled liquid crystalline materials with fatty acids

Two new series of liquid crystalline materials with non-mesomorphic fatty acids, viz. nonanoic (C₉), capric (C₁₀), undecanoic (C₁₁), tridecanoic (C₁₃), myristic (C₁₄), palmitic (C₁₆) and stearic acids (C₁₈), are prepared with non-mesomorphic proton acceptors, viz. (4-pyridyl)-benzylidene-p-n-alkylanilines (PyBnA; n = 12 and 16). The smectic phase structures formed between the proton donor (fatty acid) and proton acceptor moieties are found due to the intermolecular hydrogen bonding (HB) and are monotropic. The presence of HB is confirmed by Fourier transform infrared spectroscopy in all the compounds. The characteristic optical textures of smectic phases are observed through polarizing optical microscope, provided with a hot stage and a camera. The phase transition temperatures and the enthalpy changes across the phase transitions are determined by differential scanning calorimetry. The smectic phase exhibited by the HB complexes is confirmed by miscibility studies as smectic-B. The π–π stacking interactions in layers are found to influence the mesomorphism in these HB complexes.     

DFT calculations of <Superscript>14</Superscript>N, <Superscript>17</Superscript>O,and <Superscript>2</Superscript>H NQR parameters: Investigation of hydrogen bond interactions in sulfapyridine crystalline structure

DFT calculations of electric field gradient (EFG) tensors at the sites of ¹⁴N, ¹⁷O, and ²H nuclei are carried out to characterize the hydrogen bond (HB) interactions in the sulfapyridine crystal structure. One-molecule (monomer) and hydrogen-bonded hexameric cluster models of sulfapyridine are constructed according to available X-ray coordinates where the proton positions are optimized. Then, EFG tensors are calculated for both monomer and target molecule in the hexameric cluster of sulfapyridine to show the effect of HB interactions on the tensors. The calculated EFG tensors are converted to the experimentally measurable nuclear quadrupole resonance (NQR) parameters: quadrupole coupling constant (C _Q ) and asymmetry parameter (η _Q ). The results reveal different contribution of various nuclei to N-H⋯N and N-H⋯O HB interactions in the cluster where the N2 and O1 have major contributions. The computations are performed with B3LYP and B3PW91 functionals DFT method and 6-311+G* and 6-311++G** standard basis sets using the Gaussian 98 package.     

C-F?HO hydrogen bond in 8-fluoro-4-methyl-1-naphthol

The 8-fluoro-4-methyl-1-naphthol forms the intermolecular bifurcated HB, OH?(F, HO) in the crystal. This is quite contrasting to the reported results of the ab initio calculations. On the contrary, the intramolecular hydrogen bond in solution was confirmed by ¹H, ¹³C, and ¹⁹F NMR spectra.     

Supramolecular amide and thioamide synthons in hydrogen bonding patterns of N-aryl-furamides and N-aryl-thiofuramides

The supramolecular synthon of amide group in the primary and secondary amides is well recognized to be infinite chains of the C(4) type formed by the intermolecular hydrogen bond of the type N–HO=C. On the other hand, there is a lack of structural data for the thioamides. Three compounds belonging to the class of N-aryl-fura-mides (N-(4-bromophenyl)-5-bromo-2-furancarboxamide, N-(4-chlorophenyl)-5-bromo-2-furancarboxamide) and to the class of N-aryl-thiofuramide (N-(4-methoxyphenyl)-2-furanthiocarboxamide) are prepared and characterized by the NMR spectroscopy in solution; molecular and crystal structures in the solid state have been determined by X-ray single crystal diffractometry and the structures in the gas phase by DFT and AM1 calculations. The investigation is carried out in order to establish supramolecular amide and thioamide synthons of hydrogen bonding patterns in these crystal structures. The geometry of the N–HO=C and the N–HS=C type of hydrogen bonds are compared due to the possibility of the N–H amide group to form intramolecular hydrogen bond with the furan oxygen atom, thus, commonly, leading to the three-center hydrogen bond pattern. The competition between the S=C proton acceptor of thioamides and the other proton acceptors (such as methoxy group) for the amide N–H proton donor group has been investigated. In that context, the above-mentioned compounds are correlated with the others of this class, structurally determined, so far.     

Structural and spectral studies of 3-(2-hydroxyphenylimino)-1-phenylbutan-1-one and its diorganotin(IV) complexes

Two diorganotin(IV) complexes of the general formula R₂Sn[Ph(O)CCH-C(Me)N-C₆H₄(O)] (R = Ph, 1a; R = Me, 1b) have been synthesized from the corresponding diorganotin(IV) dichlorides and the ligand, 3-(2-hydroxyphenylimino)-1-phenylbutan-1-one (1) in methanol at room temperature in presence of triethylamine. Both compounds have been characterized by elemental analyses, IR and ¹H, ¹³C, ¹⁵N, ¹¹⁹Sn NMR spectra. The structures of the free ligand and the complexes have been confirmed by single crystal X-ray diffraction. There are three independent molecules in the crystal structure of the ligand 1 and in all three the O-bound proton is transferred to the imine nitrogen and makes an intramolecular N-H?O hydrogen bond with the carbonyl oxygen. In turn this makes an intermolecular hydrogen bond with the phenolic H atom. The crystal structure of 1 is trigonal and a new polymorph; triclinic and monoclinic forms have already been published. In 1a, the central tin atom adopts distorted trigonal-bipyramidal coordination geometry whereas in dimeric 1b it is distorted octahedral when including the intermolecular Sn-O(phenolic) bond [2.7998(20) Å]. The δ (¹¹⁹Sn) values for the complexes 1a and 1b are −306.6 and −127.9 ppm, respectively, thus indicating penta-coordinated Sn centres in solution.     

Synthesis and studies of some cholest-5-en-3-ol-(3β)[4-phenylpyridylazo]carbonate-containing supramolecular hydrogen-bonded mesogens

Mesogenic materials containing cholest-5-en-3-ol-(3β)[4-phenylpyridylazo]carbonate (CPPC) and 4-n-alkyloxybenzoic acids have been synthesized using hydrogen bonding as a mechanism for self-assembly. Phase diagrams of the binary mixtures of the hydrogen bond donor and acceptor were established using polarizing optical microscopy. The maximum isotropization point was observed for the 50 mol % composition confirming the formation of stable 1 : 1 complexes due to intermolecular hydrogen bonding. All the supramolecular assemblies built from 1 : 1 molar ratios of the hydrogen bond donor and acceptor moieties exhibit well defined smectic A (SmA) liquid crystal phases on heating and cooling cycles. The SmA phases exhibited by the complexes are not observed for the individual components. The azobenzene moiety of CPPC undergoes trans-cis-photoisomerization with a quantum yield of 0.1 and the activation energy for the thermal cis-trans-isomerization was estimated as 92 kJ mol-¹.     

Intermolecular interactions in uracil–nitrous acid complexes: structures,binding energy,topological properties,and nuclear magnetic resonance study

Molecular interactions between uracil and nitrous acid (U–NA) [C₄N₂O₂H₄? NO₂H] have been studied using B3LYP, B3PW91, and MP2 methods with different basis sets. The optimized geometries, harmonic vibrational frequencies, charge transfer, topological properties of electron density, nucleus‐independent chemical shift (NICS), and nuclear magnetic resonance one‐ and two‐bonds spin–spin coupling constants were calculated for U–NA complexes. In interaction between U and NA, eight cyclic complexes were obtained with two intermolecular hydrogen bonds N(C)HU…N(O) and OH_NA…O_U. In these complexes, uracil (U) simultaneously acts as proton acceptor and proton donor. The most stable complexes labeled, UNA1 and UNA2, are formed via NH bond of U with highest acidity and CO group of U with lowest proton affinity. There is a relationship between hydrogen bond distances and the corresponding frequency shifts. The solvent effect on complexes stability was examined using B3LYP method with the aug‐cc‐pVDZ basis set by applying the polarizable continuum model (PCM). The binding energies in the gas phase have also been compared with solvation energies computed using the PCM. Natural bond orbital analysis shows that in all complexes, the charge transfer takes place from U to NA. The results predict that the Lone Pair (LP)(O)_U → σ*(O? H) and LP(N(O)_NA → σ*(N(C)? H)_U donor–acceptor interactions are most important interactions in these complexes. Atom in molecule analysis confirms that hydrogen bond contacts are electrostatic in nature and covalent nature of proton donor groups decreases upon complexation. The relationship between spin–spin coupling constant (^1hJ_H…_Y and ^2hJ_H…_Y) with interaction energy and electronic density at corresponding hydrogen bond critical points and H‐bonds distances are investigated. NICS used for indicating of aromaticity of U ring upon complexation. © 2013 Wiley Periodicals, Inc.     

Theoretical Study on Hydrogen‐Bond Effects in IR Spectra of High‐ and Low‐Temperature Phases of Nitric Acid Dihydrate

The low‐ and high‐temperature phases (α and β, respectively) of solid nitric acid dihydrate (NAD) are studied in depth by DFT methods. Each phase contains two types of complex structures (H₃O⁺) ? (H₂O), designated A and B, with different hydrogen‐bonding (HB) characteristics. The theoretical study reveals that type A complexes are weakly bound and could be described as (H₃O)⁺ and H₂O aggregates, with decoupled vibrational modes, whereas in type B structures the proton is situated close to the centre of the O ??? O bond and induces strong vibrational coupling. The proton‐transfer mode is predicted at quite different wavenumbers in each complex, which provides an important differentiating spectral feature, together with splitting of some bands in β‐NAD. Theoretical spectra are estimated by using two GGA parameterizations, namely, PBE and BLYP. The potential‐energy surface for each type of HB in NAD is also studied, as is the spectral influence of displacement of the shared H atom along the O? O bond. The results are compared to literature infrared spectra recorded by different techniques, namely, transmission and reflection–absorption, with both normal and tilted incident radiation. This work provides a thorough assignment of the observed spectra, and predictions for some spectra not yet available. The usefulness of high‐level theoretical calculations as performed herein to discriminate between two phases of a solid crystal is thus evidenced.     

Excited‐State Hydrogen Bonding Strengthening and Weakening with Intramolecular Charge Transfer in Resorufin‐Water Complexes: A TD‐DFT Study

The geometric structures, infrared spectra and hydrogen bond binding energies of the various hydrogen‐bonded Res^?‐water complexes in states S0 and S1 have been calculated using the density functional theory (DFT) and time‐dependent density functional theory (TD‐DFT) methods, respectively. Based on the changes of the hydrogen bond lengths and binding energies as well as the spectral shifts of the vibrational mode of the hydroxyl groups, it is demonstrated that hydrogen bonds HB‐II, HB‐III and HB‐IV are strengthened while hydrogen bond HB‐I is weakened in the four singly hydrogen‐bonded Res^?‐Water complexes upon photoexcitation. When the four hydrogen bonds are formed simultaneously between one resorufin anion and four water molecules in the Res^?‐4Water complex, all the hydrogen bonds are weakened in both the ground and excited states compared with those in the corresponding singly hydrogen‐bonded Res^?‐Water complexes. Furthermore, in complex Res^?‐4Water, hydrogen bonds HB‐II and HB‐IV are strengthened while hydrogen bonds HB‐I and HB‐III are weakened after the electronic excitation. The hydrogen bond strengthening and weakening in the various hydrogen‐bonded Res^?‐water complexes should be due to the redistribution of the charges among the four heteroatoms (O_1‐3 and N₁) within the resorufin molecule upon the optical excitation.     

Structures,vibrational frequencies,topologies, and energies of hydrogen bonds in cysteine‐formaldehyde complexes

The hydrogen bonding interactions between cysteine (Cys) and formaldehyde (FA) were studied with density functional theory regarding their geometries, energies, vibrational frequencies, and topological features of the electron density. The quantum theory of atoms in molecules and natural bond orbital analyses were employed to elucidate the interaction characteristics in the Cys‐FA complexes. The intramolecular hydrogen bonds (H‐bonds) formed between the hydroxyl and the N atom of cysteine moiety in some Cys‐FA complexes were strengthened because of the cooperativity. Most of intermolecular H‐bonds involve the O atom of cysteine/FA moiety as proton acceptors, while the strongest H‐bond involves the O atom of FA moiety as proton acceptor, which indicates that FA would rather accept proton than providing one. The H‐bonds formed between the CH group of FA and the S atom of cysteine in some complexes are so weak that no hydrogen bonding interactions exist among them. In most of complexes, the orbital interaction of H‐bond is predominant during the formation of complex. The electron density (ρ_b) and its Laplace (?²ρ_b) at the bond critical point significantly correlate with the H‐bond parameter δR, while a linearly relationship between the second‐perturbation energy E(2) and ρ_b has been found as well. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

Bulk Gas‐Phase Acidity

The capability of a gaseous Brønsted acid HB to deliver protons to a base is usually described by the gas‐phase acidity (GA) value of the acid. However, GA values are standard Gibbs energy differences and refer to individual gas pressures of 1 bar for acid HB, base B^?, and proton H⁺. We show that the GA value is not suited to describe the bulk acidity of a gaseous acid. Here the pressure dependence of the activities of HB, H(HB)_n⁺, and B(HB)_m^? that result from gaseous autoprotolysis have to be considered. In this work, the pressure‐dependent absolute chemical potential of the proton in the representative gaseous proton acids CH₄, NH₃, H₂O, HF, and HCl was worked out and the general theory to describe bulk gas phase acidity—that can directly be compared with solution acidity—was developed.     

Theoretical study of H⋯P and X⋯P interactions of methylphosphines with HSX molecules

Ab initio calculations were used to analyze the interactions between thiohypohalous acids (HSX; X = F, Cl, Br, I) and methylphosphine derivatives (PH _n Me_3?n , n = 0–3) at the MP2/aug-cc-pVDZ level of theory. Interaction of HSX with PH _n Me_3?n leads to both hydrogen bond (HSX–PH _n Me_3?n –HB) as well as halogen bond (HSX–PH _n Me_3?n –XB) complexes. Stabilities of both HB and XB complexes increase with basicity of the phosphines. However, HB complexes of a phosphine molecule with different HSX have the same order of stabilities, but XB complexes of heavier thiohypohalous acids are more stable. Electron densities of complexes were characterized with the atoms in molecules methodology. The charge transfer within dimers was analyzed by means of natural bond orbitals.     

Computational studies on electron and proton transfer in phenol‐imidazole‐base triads

The electron and proton transfer in phenol‐imidazole‐base systems (base = NH₂^? or OH^?) were investigated by density‐functional theory calculations. In particular, the role of bridge imidazole on the electron and proton transfer was discussed in comparison with the phenol‐base systems (base = imidazole, H₂O, NH₃, OH^?, and NH₂^?). In the gas phase phenol‐imidazole‐base system, the hydrogen bonding between the phenol and the imidazole is classified as short strong hydrogen bonding, whereas that between the imidazole and the base is a conventional hydrogen bonding. The n value in spⁿ hybridization of the oxygen and carbon atoms of the phenolic CO sigma bond was found to be closely related to the CO bond length. From the potential energy surfaces without and with zero point energy correction, it can be concluded that the separated electron and proton transfer mechanism is suitable for the gas‐phase phenol‐imidazole‐base triads, in which the low‐barrier hydrogen bond is found and the delocalized phenolic proton can move freely in the single‐well potential. For the gas‐phase oxidized systems and all of the triads in water solvent, the homogeneous proton‐coupled electron transfer mechanism prevails. © 2009 Wiley Periodicals, Inc. J Comput Chem, 2010     

Theoretical study of the effects of substitution,solvation, and structure on the interaction between nitriles and methanol

We report an investigation on intermolecular interactions in R? CN ··· H? OCH₃ (R = H, CH₃, F, Cl, NO₂, OH, SH, SCH₃, CHO, COCH₃, CH₂Cl, CH₂F, CH₂OH, CH₂COOH, CF₃, SCOCH₃, SCF₃, OCHF₂, CH₂CF₃, CH₂OCH₃, and CH₂CH₂OH) complexes using density functional theory. The calculations were conducted on B3LYP/6‐311++G** level of theory for optimization of geometries of complexes and monomers. An improper hydrogen bonding (HB) in the H₃CO? H ··· NC? R complexes was observed in that N atom of the nitriles functions acts as a proton acceptor. Furthermore, quantum theory of “Atoms in Molecules” (AIM) and natural bond orbital (NBO) method were applied to analyze H‐bond interactions in respective complexes. The electron density (ρ) and Laplacian (?²ρ) properties, estimated by atoms in molecules calculations, indicate that H ··· N bond possesses low ρ and positive ?²ρ values, which are in agreement with partially covalent character of the HBs, whereas O? H bonds have negative ?²ρ values. In addition, the weak intermolecular force due to dipole–dipole interaction (U) is also considered for analysis. The examination of HB in these complexes by quantum theory of NBO method fairly supports the ab initio results. Natural population analysis data, the electron density, and Laplacian properties, as well as, the ν(O? H) and γ(O? H) frequencies of complexes, calculated at the B3LYP/6‐311++G** level of theory, are used to evaluate the HB interactions. The calculated geometrical parameters and conformational analysis in water phase solution show that the H₃CO? H ··· NC? R complexes in water are more stable than that in gas phase. The obtained results demonstrated a strong influence of the R substituent on the properties of complexes. Numerous correlations between topological, geometrical, thermodynamic properties, and energetic parameters were also found. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

Theoretical investigation of the structure and properties of H2B=NH2...Mn+, HB≡NH...Mn+, and Borazine...Mn+ complexes (M = Alkaline and Earth Alkaline Metals)

The nature of H₂B=NH₂...M ⁿ⁺, HB=NH...M ⁿ⁺, and Borazine...M ⁿ⁺ interactions were studied with ab-initio calculations. The interaction energies were calculated at B3LYP/6-31G(d, p) level. The calculations suggest that the size and charge of cation are two influential factors that affect the nature of interaction. The theory of atoms in molecules (AIM) and natural bond orbital (NBO) analysis of complexes indicate that the variation of densities and the extent of charge shifts upon complexation correlate well with the obtained interaction energies.     

Supramolecular assembly of hydrogen bonding,ESR studies and theoretical calculations of Cu(II) complexes

A series of copper(II) complexes were synthesized by the reaction of copper(II) chlorid with 1‐phenyl‐3methyl‐(3‐dervitives phenylhydrazo)‐5‐pyrazolone (HL_n) yields 1:1 and 1:2 (M:L) complexes depending on the reaction conditions. The elemental analysis, spectral (IR, ¹H NMR, UV‐Vis and ESR), conductance and magnetic measurements were used to characterize the isolated complexes. The IR spectral data indicate that the metal ions are coordinated through the oxygen of the keto and nitrogen of hydrazone groups. The UV‐Vis spectra, magnetic moments and ESR studies indicate square planar geometry for Cu(II) complexes ( 1–3 ) by NO monobasic bidentate and the two monobasic trans bidentate in octahedral geometry for Cu(II) complexes ( 4–6 ). It is found that the change of substituent affects the theoretical calculations of Cu(II) complexes. Molecular docking was used to predict the binding between the ligands (HL_n) and the receptors of prostate cancer mutant (2Q7K), breast cancer mutant (3HB5), crystal structure of E. coli (3T88) and crystal structure of S. aureus (3Q8U). The molecular and electronic structures of Cu(II) complexes and quantum chemical calculations were studied. According to intramolecular hydrogen bond leads to increasing of the complexes stability.     

Creation of Ternary Multicomponent Crystals by Exploitation of Charge‐Transfer Interactions

Four new ternary crystalline molecular complexes have been synthesised from a common 3,5‐dinitrobenzoic acid (3,5‐dnda) and 4,4′‐bipyridine (bipy) pairing with a series of amino‐substituted aromatic compounds (4‐aminobenzoic acid (4‐aba), 4‐(N,N‐dimethylamino)benzoic acid (4‐dmaba), 4‐aminosalicylic acid (4‐asa) and sulfanilamide (saa)). The ternary crystals were created through the application of complementary charge transfer and hydrogen‐bonding interactions. For these systems a dimer was created through a charge‐transfer interaction between two of the components, while hydrogen bonding between the third molecule and this dimer completed the construction of the ternary co‐crystal. All resulting structures display the same acid ??? pyridine interaction between 3,5‐dnba and bipy. However, changing the third component causes the proton of this bond to shift from neutral OH ??? N to a salt form, O^? ??? HN⁺, as the nature of the group hydrogen bonding to the carboxylic acid was changed. This highlights the role of the crystal environment on the level of proton transfer and the utility of ternary systems for the study of this process.     

Structural role of hydrogen bond networks in amino acid–acid systems. (I) The network with highly polarizable OHO hydrogen bonds in sarcosine–methanesulfonic acid (2:1) crystal

The sarcosine–methanesulfonic acid (2:1) crystal was selected for examination of two problems: relations between different components of the amino acid–acid hydrogen bond network and a role of very strong and highly polarizable OHO hydrogen bond in the main structural units of the crystal: sarcosinium–sarcosine dimers (complexes). Our observations are based on phase transitions of the crystal monitored by DSC, X-ray diffraction and temperature evolutions of selected bands of IR spectra. Our experimental and DFT results provide information on the potential energy profile of the OHO proton and its evolution with temperature. The OO distance of the primary hydrogen bond remains almost unchanged and its proton is strongly delocalized and sensitive on neighbour NHO hydrogen bond. We propose a possible mechanism of the phase transitions and coupling between νCO vibrations of the carboxyl group and moving of the proton in neighbour OHO hydrogen bridge.     

The Molecular Structure and NMR Properties of P-Phosphinoylmethyl Aminophosphonium Salts

The molecular structures of two aminophosphonium salts (bromide and tetrafluoroborate) have been determined by X-ray analysis. They have similar conformations and hydrogen bond (HB) networks: the N–H acid proton is bonded to the anion and, in the case of the fluoroborate, to the oxygen atom of the phosphine oxide, forming a pseudo six-membered ring closed by a weak N–HO intramolecular hydrogen bond (IMHB). These compounds have been studied by multinuclear NMR in solution, including the ¹⁵N-labeled derivatives, to determine a complete set of coupling constants. A coupling of 1.5 Hz between the ¹⁵N and the ³¹P nuclei, separated by three bonds, was observed experimentally for the bromide in CDCl₃ solution, which appears to be a classical ³ J _N-P across the covalent bonds and not a ^3h J _N-P across the IMHB.