Theoretical Studies on S-Phenyl-thiabenzene,S-Phenyl-thianaphthalene,and S-Phenyl-thiaanthracene

The molecular structures of S-phenyl-thiabenzene 1, S-phenyl-1-thianaphthalene 2, S-phenyl-2-thianaphthalene 3, and S-phenyl-9-thiaanthracene 4 are studied by ab initio calculations using HF as well as DFT methods at the 6–311+G? level of theory. The non-planar boat conformers of 1–4 with 6π electrons in the heterocyclic ring appear to be more stable than the corresponding planar conformers with 8π electrons in the ring. The activation energy for the inversion at the sulfur atom is compared for 1–4. Conformational flexibility of 1–4 is studied.     

Intramolecular hydrogen bond in 3‐imino‐propenylamine isomers: AIM and NBO studies

The molecular structure and intramolecular hydrogen bond energy of 18 conformers of 3‐imino‐propenyl‐amine were investigated at MP2 and B3LYP levels of theory using the standard 6‐311++G** basis set. The atom in molecules or AIM theory of Bader, which is based on the topological properties of the electron density (ρ), was used additionally and the natural bond orbital (NBO) analysis was also carried out. Furthermore calculations for all possible conformations of 3‐imino‐propenyl‐amin in water solution were also carried out at B3LYP/6‐311++G** and MP2/6‐311++G** levels of theory. The calculated geometrical parameters and conformational analyses in gas phase and water solution show that the imine–amine conformers of this compound are more stable than the other conformers. B3LYP method predicts the IMA‐1 as global minimum. This stability is mainly due to the formation of a strong N? H···N intramolecular hydrogen bond, which is assisted by π‐electrons resonance, and this π‐electrons are established by NH2 functional group. Hydrogen bond energies for all conformers of 3‐imino‐propenyl‐amine were obtained from the related rotamers methods. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2010     

Charge‐transfer character of halogen bonding: Molecular structures and electronic spectroscopy of carbon tetrabromide and bromoform complexes with organic σ‐ and π‐donors

Carbon tetrabromide and bromoform are employed as prototypical electron acceptors to demonstrate the charge‐transfer nature of various intermolecular complexes with three different structural types of electron donors represented by (1) halide and pseudohalide anions, (2) aromatic (π‐bonding) hydrocarbons, and (3) aromatics with (n‐bonding) oxygen or nitrogen centers. UV–Vis spectroscopy identifies the electronic transition inherent to such [1:1] complexes; and their Mulliken correlation with the donor/acceptor strength verifies the relevant charge‐transfer character. X‐ray crystallography of CBr₄/HCBr₃ complexes with different types of donors establishes the principal structural features of halogen bonding. © 2006 Wiley Periodicals, Inc. Heteroatom Chem 17:449–459, 2006; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20264     

Ylide character and stability of heterocyclic benzenes

Optimizations are carried out on heterocyclic benzenes including oxabenzene ( 1_O ), thiabenzene ( 1_S ), selenabenzene ( 1_Se ), tellurabenzene ( 1_Te ), 1,1‐dihydropyridinium ( 2_N ), 1,1‐dihydrophosphinium ( 2_P ), 1,1‐dihydroarsinium ( 2_As ), and 1,1‐dihydrostybinium ( 2_Sb ), using HF and DFT methods with 6‐311++G* basis sets. These partly aromatic compounds have 6π‐electrons showing ylide character. Nonplanar boat conformers appear as global minima for 1_X . In contrast, planar conformers are the most stable in 2_X series. The inversion barrier energy of heteroatom in 1_O appears the least in 1_X structures. Ylide character increases in series 1_X and 2_X with the orders of 1_Te > 1_O > 1_Se > 1_S and 2_As > 2_N > 2_Sb > 2_P , respectively. Homodesmic studies show stability order for series 1_X to be 1_S > 1_Se > 1_Te > 1_O , whereas the order of stability for series 2_X is 2_As > 2_P > 2_Sb > 2_N . © 2008 Wiley Periodicals, Inc. Heteroatom Chem 19:412–417, 2008; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20443     

Theoretical analysis of fluoroglycine conformers

Seven different optimized conformers of α‐fluoroglycine (H₂NCHFCOOH) were obtained from ab initio calculations. Some of these conformers are exceptionally stable compared to similar conformers of glycine. Conformers in which the lone pair of electrons on the nitrogen atom are antiperiplanar to the C F bond are more stable than conformers that do not have such an arrangement. The stability difference between conformers with such an arrangement and conformers that have the lone pair of electrons synperiplanar to the C F bond is about 27 kJ/mol (calculated at the MP2/6‐31+G* level). Conformers that have the lone pair of electrons antiperiplanar to the C F bond possess a longer C F bond, a shorter C N bond, and sp²‐like amino bond angles. For some conformers an unusual hydrogen bond involving the acidic carboxylic acid hydrogen and the electronegative fluorine atom is observed. © 2000 John Wiley & Sons, Inc. J Comput Chem 21: 426–431, 2000     

An approach to estimate the energy and strength of the intramolecular hydrogen bond in different conformers of 4‐methylamino‐3‐penten‐2‐one

The molecular structure and intramolecular hydrogen bond energy of 32 conformers of 4‐methylamino‐3‐penten‐2‐one were investigated at MP2 and B3LYP levels of theory using the standard 6–31G** basis set and AIM analyses. Furthermore, calculations for all the possible conformations of 4‐methylamino‐3‐penten‐2‐one in water solution were also carried out at B3LYP/6–31G** level of theory. The calculated geometrical parameters and conformational analyses in gas phase and water solution show that the ketoamine conformers of this compound are more stable than the other conformers (i.e., enolimine and ketoimine). This stability is mainly due to the formation of a strong N? H···O intramolecular hydrogen bond, which is assisted by π‐electrons resonance. Hydrogen bond energies for all conformers of 4‐methylamino‐3‐penten‐2‐one were obtained from the related rotamers method. The nature of intramolecular hydrogen bond existing within 4‐methylamino‐3‐penten‐2‐one has been investigated by means of the Bader theory of atoms in molecules, which is based on topological properties of the electron density. The results of these calculations support the results which obtained by related rotamers method. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Reversible Redox Reaction Between Antiaromatic and Aromatic States of 32π‐Expanded Isophlorins

32π‐antiaromatic expanded isophlorins with a varying number of thiophene and furan rings adopt either planar, ring‐inverted, or twisted conformations depending on the number of furan rings in the macrocycle. However, they exhibit identical reactivity with respect to their oxidation to aromatic 30π‐dicationic species under acidic conditions. These 32π‐antiaromatic macrocycles can also be oxidized with [Et₃O⁺SbCl₆^?]and NOBF₄ to generate dications, thus confirming ring oxidation of macrocycles. Furthermore, they can be reduced back to their parent 32π‐antiaromatic state by triethylamine, Zn, or FeCl₂. Single‐crystal X‐ray diffraction analysis confirmed a figure‐eight conformation for a hexafuran system, which opens to a planar structure upon oxidation.     

Conformational analysis of some 1R,4S‐2‐arylidene‐p‐menthan‐3‐ones by 1H NMR spectroscopy and molecular simulation

Based on ¹H NMR spectral analysis combined with molecular simulation, conformational states of the cyclohexanone ring were studied for some 1R,4S‐2‐(4‐X‐benzylidene)‐p‐menthan‐3‐ones (X = COOCH₃ or C₆H₅) in CDCl₃ and C₆D₆. The co‐existence of chair conformers with an axial orientation of both alkyl substituents and twist‐boat forms was established for the compounds studied at room temperature (22–23° C). The substituent X does not influence appreciably the ratio of these conformers, but the fraction of twist‐boat forms increases noticeably in benzene solutions as compared with CDCl₃ solutions. Rotameric states of the isopropyl fragment were also characterised for the compounds studied. Distinctions in conformational states for the 1R,4S‐2‐arylidene‐p‐menthan‐3‐ones and (?)‐menthone were revealed and are discussed. Copyright © 2002 John Wiley & Sons, Ltd.     

The reactions of hexachlorocyclotriphosphazatriene with pyridine derivatives

The reactions of hexachlorocyclotripho‐sphazatriene, N₃P₃Cl₆ ( 1 ), with 2‐hydroxypyridine ( 2 ), 2‐aminopyridine ( 3 ), 2‐amino‐6‐methyl‐pyridine ( 4 ), and 2‐hydroxy‐4‐methylquinoline ( 5 ) have been investigated. The products were identified by elemental analyses, IR, ¹H, ¹³C, and ³¹P NMR spectroscopy. © 2006 Wiley Periodicals, Inc. Heteroatom Chem 17:57–60, 2006; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20185     

Silicon‐Containing Formal 4π‐Electron Four‐Membered Ring Systems: Antiaromatic,Aromatic, or Nonaromatic?

Density functional theory calculations (B3LYP) have been carried out to investigate the 4π‐electron systems of 2,4‐disila‐1,3‐diphosphacyclobutadiene (compound 1 ) and the tetrasilacyclobutadiene dication (compound 2 ). The calculated nucleus‐independent chemical shift (NICS) values for these two compounds are negative, which indicates that the core rings of compounds 1 and 2 have a certain amount of aromaticity. However, deep electronic analysis reveals that neither of these two formal 4π‐electron four‐membered ring systems is aromatic. Compound 1 has very weak, almost negligible antiaromaticity, and the amidinate ligands attached to the Si atoms play an important role in stabilizing this conjugated 4π‐electron system. The monoanionic bidentate ligand interacts with the conjugated π system to cause π‐orbital splitting. This ligand‐induced π‐orbital splitting effect provides an opportunity to manipulate the gap between occupied and unoccupied π orbitals in conjugated systems. Conversely, compound 2 is nonaromatic because its core ring does not have a conjugated π ring system and does not fulfill the requirements of a Hückel system.     

Rational Synthesis of Antiaromatic 5,15‐Dioxaporphyrin and Oxidation into β,β‐Linked Dimers

5,15‐Dioxaporphyrin was synthesized for the first time by a nucleophilic aromatic substitution reaction of a nickel bis(α,α′‐dibromodipyrrin) complex with benzaldoxime, followed by an intramolecular annulation of the α‐hydroxy‐substituted intermediate. This unprecedented molecule is a 20π‐electron antiaromatic system, in terms of Hückel's rule of aromaticity, because lone pair electrons of oxygen atoms are incorporated into the 18π‐electron conjugated system of the porphyrin. A theoretical analysis based on the gauge‐including magnetically induced current method confirmed its antiaromaticity and a dominant inner ring pathway for the ring current. The unique reactivity of 5,15‐dioxaporphyrin forming a β,β‐linked dimer upon oxidation was also revealed.     

Computational study of 4‐fluoro‐4‐chloro‐ and 4‐fluoro‐4‐bromo‐4‐silathiacyclohexane S‐oxides: Effect of halogen on the SO→Si intramolecular coordination in the boat and twist conformers

Chair, twist, and boat conformations of axial and equatorial 4‐fluoro‐4‐chloro‐ and 4‐fluoro‐4‐bromo‐4‐silathiacyclohexane S‐oxides have been calculated at the second‐order Møller–Plesset (MP2) and density functional theory (DFT) levels of theory. The 2,5‐twist and 1,4‐boat conformers of the axial sulfoxides are stabilized by transannular interaction between the sulfinyl oxygen and silicon to give trigonal bipyramidal geometry at silicon. The stability of conformers containing pentacoordinate silicon is governed by the balance of the transannular sulfinyl oxygen–silicon coordination, nonbonded H…H and O…Hlg_ax interactions, electronegativity of Hlg_ax and nucleofugality of Hlg_eq, and may approach the stability of the lowest‐energy chair conformers. The effect of pentacoordination on the energy and geometry of Si‐halogenated 4‐silathiane S‐oxides is analyzed as a function of the halogen nature and position. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Conformational analysis of cycloheptane,oxacycloheptane, 1,2‐dioxacycloheptane, 1,3‐dioxacycloheptane,and 1,4‐dioxacycloheptane

The conformational analysis of cycloheptane (1), oxacycloheptane (2), 1,2‐dioxacycloheptane (3), 1,3‐dioxacycloheptane (4), and 1,4‐dioxacycloheptane (5) has been carried out using B3LYP, CCD, CCSD, and QCISD with the 6‐311+G(d,p) and cc‐pVDZ basis sets. The twist chair conformers are predicted to be lower in energy than their corresponding boat and chair conformations. All levels of theory predict (4) to be lower in energy than (3) and (5). CCSD predicts remarkably similar activation barriers for the conformational interconversion of the twist chair conformers to their corresponding boat conformers. Small barriers to pseudorotation are also predicted. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2008     

Thiazole constrained analogues of the thevinones: synthesis and structure

A simple synthesis of ring‐constrained endoethenomorphinans possessing 2′‐substituted thiazole ring 4–6 has been achieved by regio‐ and stereoselective Diels–Alder reaction of thiazolomorphinandienes 1–3 and methyl vinyl ketone in high yield (72, 64 and 87%, respectively). The structure of cycloaddition products was determined by high resolution mass spectrometry (HRMS), IR, 1D and 2D NMR techniques. Double‐pulsed field gradient spin‐echo–nOe and HMBC were found to be particularly powerful and indispensable tools in the exact structural elucidation of the presented new class of spatially constrained thevinones. Copyright © 2009 John Wiley & Sons, Ltd.     

Structure and Bonding in Stannadiphospholes and their Dianions SnC2P2R2m (R=H,tBu m=0, −2): A Comparative Study with C5H5+ and C5H5− Analogues

The potential energy surfaces of both neutral and dianionic SnC₂P₂R₂ (R=H, tBu) ring systems have been explored at the B3PW91/LANL2DZ (Sn) and 6‐311+G* (other atoms) level. In the neutral isomers the global minimum is a nido structure in which a 1,2‐diphosphocyclobutadiene ring (1,2‐DPCB) is capped by the Sn. Interestingly, the structure established by X‐ray diffraction analysis, for R=tBu, is a 1,3‐DPCB ring capped by Sn and it is 2.4 kcal mol^?1 higher in energy than the 1,2‐DPCB ring isomer. This is possibly related to the kinetic stability of the 1,3‐DPCB ring, which might originate from the synthetic precursor ZrCp₂tBu₂C₂P₂. In the case of the dianionic isomers we observe only a 6π‐electron aromatic structure as the global minimum, similarly to the cases of our previously reported results with other types of heterodiphospholes. 1 , 4 , 19 The existence of large numbers of cluster‐type isomers in neutral and 6π‐planar structures in the dianions SnC₂P₂R₂^2? (R=H, tBu) is due to 3D aromaticity in neutral clusters and to 2D π aromaticity of the dianionic rings. Relative energies of positional isomers mainly depend on: 1) the valency and coordination number of the Sn centre, 2) individual bond strengths, and 3) the steric effect of tBu groups. A comparison of neutral stannadiphospholes with other structurally related C₅H₅⁺ analogues indicates that Sn might be a better isolobal analogue to P⁺ than to BH or CH⁺. The variation in global minima in these C₅H₅⁺ analogues is due to characteristic features such as 1) the different valencies of C, B, P and Sn, 2) the electron deficiency of B, 3) weaker pπ–pπ bonding by P and Sn atoms, and 4) the tendency of electropositive elements to donate electrons to nido clusters. Unlike the C₅H₅⁺ systems, all C₅H₅^? analogues have 6π‐planar aromatic structures as global minima. The differences in the relative ordering of the positional isomers and ligating properties are significant and depend on 1) the nature of the π orbitals involved, and 2) effective overlap of orbitals.     

Synthesis of novel benzoxazines containing glycidyl groups: A study of the crosslinking behavior

Benzoxazines derived from aniline and 4‐hydroxybenzoic acid and from phenol and 4‐aminobenzoic acid were prepared with two different synthetic approaches. When the carboxylic group reacted with epichlorohydrin, glycidylic derivatives M‐1 and M‐2 , respectively, were obtained. The ring opening of benzoxazine and epoxy took place simultaneously with no catalyst for both monomers. Likewise, both ring‐opening polymerizations took place when boron trifluoride monoethylamine (BF₃·MEA) or 4‐(N,N‐dimethylamino)pyridine was used as a catalyst for M‐1 . However, for M‐2 , when BF₃·MEA was used as a catalyst, the epoxy and benzoxazine ring openings could be distinguished, and a polyether intermediate containing benzoxazine side chains could be obtained. © 2006 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 44: 1529–1540, 2006     

Ring signatures for benzenoids with up to seven rings,Part 1: Catacondensed systems

We revisited the π‐electron ring partitions in catacondensed benzenoids and re‐examined structural regularities reported for the ring partitions in these compounds, seeking the origin of the observed regularities. We examined the distribution of the π‐electron ring partitions by counting the contributions arising from benzene rings having different assigned numbers of π‐electrons. This has led to a better insight into the underlying structure of the π‐electron ring partitions and also to a novel and unique π‐electron “signature” of individual rings in benzenoid hydrocarbons. The physical interpretation of the local π‐electron ring partition represents the local π‐electron density of benzenoid molecules, and is not an alternative index of local aromaticity as one may erroneously assume. © 2008 Wiley Periodicals, Inc. Int J Quantum Chem, 2008     

A theoretical study on the conformation of 3‐phosphinoxido‐ and 3‐phosphono‐1,2,3,4,5,6‐hexahydrophosphinine 1‐oxides

The title compounds ( 2 and 4 ) obtained by the diastereoselective hydrogenation of the corresponding 1,2,3,6‐tetrahydrophosphinine oxides ( 1 and 3 ) were subjected to a detailed quantum chemical study. The possible chair conformers were calculated at the HF/6‐31G* level of theory, according to which, the 1‐phenyl‐3‐P(O)Y₂‐substituted products ( 2 ) exist in the trans₁ form, in which all substituents are equatorial. At the same time, the 1‐ethoxy‐3‐dialkylphosphono compounds ( 4 ) adopt the cis conformations, in which the 1‐ethoxy group is axial and the 3‐P(O)(OR)₂ moiety is equatorial. The major diastereomer ( 4–1 ) is cis₃, in which the 5‐methyl group is axial, while the minor one is cis₁ with an equatorial methyl substituent. It is noteworthy that the rotational position of the exocyclic P(O)Z₂ function affected the energy content of the chair conformer to a high extent. The possibility of the involvement of the twist conformers was also considered. © 2005 Wiley Periodicals, Inc. Heteroatom Chem 16:520–524, 2005; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20148     

Simultaneous Induction of Axial and Planar Chirality in Arene–Chromium Complexes by Molybdenum‐Catalyzed Enantioselective Ring‐Closing Metathesis

The molybdenum‐catalyzed asymmetric ring‐closing metathesis of the various C_s‐symmetric (π‐arene)chromium substrates provides the corresponding bridged planar‐chiral (π‐arene)chromium complexes in excellent yields with up to >99 % ee. With a bulky and unsymmetrical substituent, such as N‐indolyl or 1‐naphthyl, at the 2‐positions of the η⁶‐1,3‐diisopropenylbenzene ligands, both biaryl‐based axial chirality and π‐arene‐based planar chirality are simultaneously induced in the products. The axial chirality is retained even after the removal of the dicarbonylchromium fragment, and the chiral biaryl/heterobiaryl compounds are obtained with complete retention of the enantiopurity.     

Reactions of nitroxides with sulfur‐containing compounds,part IV: Synthesis of novel nitroxide (thio)ureas1

The reactions of 4‐isothiocyanato‐2,2,6,6‐tetramethylpiperidine‐1‐oxyl 2 and 4‐isocyanato‐2,2,6,6‐tetramethylpiperidine‐1‐oxyl 3 with selected amines and lower alcohols give the corresponding novel thioureas 4 , ureas 5 , thiocarbamates 6 , and carbamates 7 , all bearing the nitroxyl moiety. The characteristic features of EI mass spectra of (thio)ureas 4 and 5 are described. Some of the synthesized thioureas 4 , ureas 5 , thiocarbamates 6 , and carbamates 7 are moderately or weakly active against pathogenic fungi. © 2006 Wiley Periodicals, Inc. Heteroatom Chem 17:393–401, 2006; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20228